RNA–Protein interactions for RNA: ENST00000637223.1

CLN6-218, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-218ENST00000637223 LINC00528Q8N1L1 170 aa10.86□□□□□ -0.67
CLN6-218ENST00000637223 A0A1W2PNN7 141 aa10.85□□□□□ -0.67
CLN6-218ENST00000637223 TSPEAR-AS2P59090 65 aa10.85□□□□□ -0.67
CLN6-218ENST00000637223 SFTA2Q6UW10 78 aa10.85□□□□□ -0.67
CLN6-218ENST00000637223 PCP2Q8IVA1 136 aa10.85□□□□□ -0.67
CLN6-218ENST00000637223 PFN2P35080 140 aa10.84□□□□□ -0.67
CLN6-218ENST00000637223 FAM168BA1KXE4 195 aa10.83□□□□□ -0.68
CLN6-218ENST00000637223 C9orf129Q5T035 196 aaKnown RBP10.83□□□□□ -0.68
CLN6-218ENST00000637223 Q5VSD8 79 aa10.83□□□□□ -0.68
CLN6-218ENST00000637223 XAGE1AQ9HD64 81 aa10.83□□□□□ -0.68
CLN6-218ENST00000637223 ERG28Q9UKR5 140 aa10.83□□□□□ -0.68
CLN6-218ENST00000637223 ZNF815PA8K554 130 aa10.82□□□□□ -0.68
CLN6-218ENST00000637223 FAM229AH3BQW9 127 aa10.82□□□□□ -0.68
CLN6-218ENST00000637223 NDUFA12Q9UI09 145 aa10.82□□□□□ -0.68
CLN6-218ENST00000637223 UBR4Q5T4S7 5183 aa10.82□□□□□ -0.68
CLN6-218ENST00000637223 FAM19A5Q7Z5A7 132 aaPredicted RBP10.81□□□□□ -0.68
CLN6-218ENST00000637223 TAL2Q16559 108 aa10.8□□□□□ -0.68
CLN6-218ENST00000637223 C2orf91Q6ZV80 131 aa10.8□□□□□ -0.68
CLN6-218ENST00000637223 FLG2Q5D862 2391 aaPredicted RBP10.8□□□□□ -0.68
CLN6-218ENST00000637223 A0A0U1RRA0 63 aa10.79□□□□□ -0.68
CLN6-218ENST00000637223 HERV-K104P63124 156 aa10.79□□□□□ -0.68
CLN6-218ENST00000637223 LINC00587B1AMM8 73 aa10.78□□□□□ -0.68
CLN6-218ENST00000637223 MEIG1Q5JSS6 88 aa10.78□□□□□ -0.68
CLN6-218ENST00000637223 SCGB1D4Q6XE38 83 aa10.78□□□□□ -0.68
CLN6-218ENST00000637223 TTTY13Q9BZ97 58 aa10.78□□□□□ -0.68
CLN6-218ENST00000637223 M0R143 59 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 TIMM17BO60830 172 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 SMIM13P0DJ93 91 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 LINC00158P58513 81 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 CTAG1AP78358 180 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 HSD52Q0P140 79 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 COX17Q14061 63 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 PHF5AQ7RTV0 110 aaKnown RBP10.77□□□□□ -0.69
CLN6-218ENST00000637223 KRTAP7-1Q8IUC3 87 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 C7orf33Q8WU49 177 aa10.77□□□□□ -0.69
CLN6-218ENST00000637223 RPL37AP61513 92 aaKnown RBP10.76□□□□□ -0.69
CLN6-218ENST00000637223 SERTAD4-AS1Q5TG53 156 aa10.76□□□□□ -0.69
CLN6-218ENST00000637223 Q6ZVH6 145 aa10.76□□□□□ -0.69
CLN6-218ENST00000637223 SPANXB1Q9NS25 103 aaPredicted RBP10.76□□□□□ -0.69
CLN6-218ENST00000637223 PLA2G1BP04054 148 aaKnown RBP10.75□□□□□ -0.69
CLN6-218ENST00000637223 LBHQ53QV2 105 aaPredicted RBP10.75□□□□□ -0.69
CLN6-218ENST00000637223 SND1-IT1Q9HBX3 110 aa10.75□□□□□ -0.69
CLN6-218ENST00000637223 VPS13BQ7Z7G8 4022 aa10.75□□□□□ -0.69
CLN6-218ENST00000637223 SRRM2Q9UQ35 2752 aaKnown RBP10.75□□□□□ -0.69
CLN6-218ENST00000637223 MYCBP2O75592 4640 aa10.75□□□□□ -0.69
CLN6-218ENST00000637223 TMEM238C9JI98 176 aa10.74□□□□□ -0.69
CLN6-218ENST00000637223 J3QL48 77 aa10.74□□□□□ -0.69
CLN6-218ENST00000637223 M0QXV9 152 aa10.74□□□□□ -0.69
CLN6-218ENST00000637223 A0A0J9YXY3 114 aa10.73□□□□□ -0.69
CLN6-218ENST00000637223 PPDPFQ9H3Y8 114 aa10.72□□□□□ -0.69
CLN6-218ENST00000637223 TP73-AS1Q9UF72 201 aa10.72□□□□□ -0.69
CLN6-218ENST00000637223 KRTAP10-4P60372 401 aaPredicted RBP10.71□□□□□ -0.69
CLN6-218ENST00000637223 MIR7-3HGQ8N6C7 128 aa10.71□□□□□ -0.69
CLN6-218ENST00000637223 C22orf24Q9Y442 160 aa10.71□□□□□ -0.69
CLN6-218ENST00000637223 COPS9Q8WXC6 57 aa10.7□□□□□ -0.7
CLN6-218ENST00000637223 SRSF9Q13242 221 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLN6-218ENST00000637223 DAND5Q8N907 189 aa10.69□□□□□ -0.7
CLN6-218ENST00000637223 HIST1H4GQ99525 98 aa10.69□□□□□ -0.7
CLN6-218ENST00000637223 SPANXDQ9BXN6 97 aa10.69□□□□□ -0.7
CLN6-218ENST00000637223 SPANXCQ9NY87 97 aa10.69□□□□□ -0.7
CLN6-218ENST00000637223 PLA2G2DQ9UNK4 145 aa10.69□□□□□ -0.7
CLN6-218ENST00000637223 IFITM1P13164 125 aa10.68□□□□□ -0.7
CLN6-218ENST00000637223 UBE2BP63146 152 aa10.68□□□□□ -0.7
CLN6-218ENST00000637223 BVES-AS1Q5T3Y7 98 aa10.68□□□□□ -0.7
CLN6-218ENST00000637223 KRTAP11-1Q8IUC1 163 aa10.68□□□□□ -0.7
CLN6-218ENST00000637223 CEND1Q8N111 149 aa10.68□□□□□ -0.7
CLN6-218ENST00000637223 SNHG12Q9BXW3 62 aa10.68□□□□□ -0.7
CLN6-218ENST00000637223 PRR3P79522 188 aaKnown RBP10.67□□□□□ -0.7
CLN6-218ENST00000637223 Q8NDZ9 215 aa10.67□□□□□ -0.7
CLN6-218ENST00000637223 LITAFQ99732 161 aa10.67□□□□□ -0.7
CLN6-218ENST00000637223 TMEM238LA0A1B0GVL6 79 aa10.66□□□□□ -0.7
CLN6-218ENST00000637223 A6NJY4 79 aa10.66□□□□□ -0.7
CLN6-218ENST00000637223 MRPL55Q7Z7F7 128 aaKnown RBP10.66□□□□□ -0.7
CLN6-218ENST00000637223 NKAPP1Q8N9T2 125 aa10.66□□□□□ -0.7
CLN6-218ENST00000637223 IGLV5-37A0A075B6J1 123 aa10.65□□□□□ -0.7
CLN6-218ENST00000637223 GAGE10A6NGK3 116 aa10.65□□□□□ -0.7
CLN6-218ENST00000637223 VPREB1P12018 145 aa10.65□□□□□ -0.7
CLN6-218ENST00000637223 HINT1P49773 126 aaPredicted RBP10.65□□□□□ -0.7
CLN6-218ENST00000637223 PSORS1C2Q9UIG4 136 aa10.65□□□□□ -0.7
CLN6-218ENST00000637223 A6NDN8 102 aa10.64□□□□□ -0.71
CLN6-218ENST00000637223 RPL24P83731 157 aaKnown RBP10.64□□□□□ -0.71
CLN6-218ENST00000637223 COL5A1-AS1Q5SY13 56 aa10.64□□□□□ -0.71
CLN6-218ENST00000637223 ADAMTSL4-AS1Q5T5F5 129 aa10.64□□□□□ -0.71
CLN6-218ENST00000637223 NPC2P61916 151 aa10.63□□□□□ -0.71
CLN6-218ENST00000637223 LINC00167Q96N53 147 aa10.63□□□□□ -0.71
CLN6-218ENST00000637223 RPL37AP8A6NKH3 93 aa10.62□□□□□ -0.71
CLN6-218ENST00000637223 C1orf137Q5JT78 98 aa10.62□□□□□ -0.71
CLN6-218ENST00000637223 LOC107984156A0A0G2JMH3 177 aa10.6□□□□□ -0.71
CLN6-218ENST00000637223 ARL17AQ8IVW1 177 aa10.6□□□□□ -0.71
CLN6-218ENST00000637223 A0A1B0GWB2 263 aa10.59□□□□□ -0.71
CLN6-218ENST00000637223 NCR3O14931 201 aa10.59□□□□□ -0.71
CLN6-218ENST00000637223 BATFQ16520 125 aa10.59□□□□□ -0.71
CLN6-218ENST00000637223 SOSTDC1Q6X4U4 206 aa10.59□□□□□ -0.71
CLN6-218ENST00000637223 IGKV2-28A0A075B6P5 120 aa10.58□□□□□ -0.72
CLN6-218ENST00000637223 EIF4EBP3O60516 100 aaPredicted RBP10.58□□□□□ -0.72
CLN6-218ENST00000637223 IGKV2D-28P01615 120 aa10.58□□□□□ -0.72
CLN6-218ENST00000637223 FXYD2P54710 66 aa10.58□□□□□ -0.72
CLN6-218ENST00000637223 PKHD1L1Q86WI1 4243 aa10.58□□□□□ -0.72
CLN6-218ENST00000637223 MUSTN1Q8IVN3 82 aa10.57□□□□□ -0.72
CLN6-218ENST00000637223 LINC00308Q8TCZ7 52 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms