RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 UBE2V1Q13404 147 aa6.92□□□□□ -1.3
CLN3-248ENST00000636355 LINC00476Q8WZB0 136 aa6.92□□□□□ -1.3
CLN3-248ENST00000636355 CBY1Q9Y3M2 126 aa6.92□□□□□ -1.3
CLN3-248ENST00000636355 SPCS1Q9Y6A9 102 aa6.92□□□□□ -1.3
CLN3-248ENST00000636355 GAGE10A6NGK3 116 aa6.91□□□□□ -1.3
CLN3-248ENST00000636355 LINC00337Q8N6G1 96 aa6.91□□□□□ -1.3
CLN3-248ENST00000636355 RPL28P46779 137 aaKnown RBP6.9□□□□□ -1.3
CLN3-248ENST00000636355 PSMB2P49721 201 aa6.9□□□□□ -1.3
CLN3-248ENST00000636355 TMEM126AQ9H061 195 aa6.9□□□□□ -1.3
CLN3-248ENST00000636355 PLA2G2DQ9UNK4 145 aa6.9□□□□□ -1.3
CLN3-248ENST00000636355 STARD9Q9P2P6 4700 aa6.89□□□□□ -1.31
CLN3-248ENST00000636355 LOC107984640A0A0U1RRK4 108 aa6.89□□□□□ -1.31
CLN3-248ENST00000636355 LRCOL1A6NCL2 159 aa6.89□□□□□ -1.31
CLN3-248ENST00000636355 TRIAP1O43715 76 aa6.89□□□□□ -1.31
CLN3-248ENST00000636355 NAA38Q9BRA0 125 aaKnown RBP6.89□□□□□ -1.31
CLN3-248ENST00000636355 VPS13DQ5THJ4 4388 aa6.89□□□□□ -1.31
CLN3-248ENST00000636355 Q6ZRP5 223 aa6.88□□□□□ -1.31
CLN3-248ENST00000636355 LYSTQ99698 3801 aa6.87□□□□□ -1.31
CLN3-248ENST00000636355 IGLV5-37A0A075B6J1 123 aa6.87□□□□□ -1.31
CLN3-248ENST00000636355 H7C2G1 150 aa6.87□□□□□ -1.31
CLN3-248ENST00000636355 SLPIP03973 132 aa6.87□□□□□ -1.31
CLN3-248ENST00000636355 VPREB1P12018 145 aa6.87□□□□□ -1.31
CLN3-248ENST00000636355 LECT2O14960 151 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 IGLV6-57P01721 117 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 SCGB1C2P0DMR2 95 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 RPL18AQ02543 176 aaKnown RBP6.86□□□□□ -1.31
CLN3-248ENST00000636355 WFDC2Q14508 124 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 ATXN8Q156A1 80 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 C1orf134Q5TEV5 83 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 ALMS1Q8TCU4 4167 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 DNAH6Q9C0G6 4158 aa6.86□□□□□ -1.31
CLN3-248ENST00000636355 C16orf90A8MZG2 172 aa6.85□□□□□ -1.31
CLN3-248ENST00000636355 H0YGX0 51 aa6.85□□□□□ -1.31
CLN3-248ENST00000636355 M0R378 163 aa6.85□□□□□ -1.31
CLN3-248ENST00000636355 LY6G6CO95867 125 aa6.85□□□□□ -1.31
CLN3-248ENST00000636355 S100A7L2Q5SY68 101 aa6.85□□□□□ -1.31
CLN3-248ENST00000636355 XAGE1AQ9HD64 81 aa6.85□□□□□ -1.31
CLN3-248ENST00000636355 PLECQ15149 4684 aaKnown RBP6.85□□□□□ -1.31
CLN3-248ENST00000636355 F8W1H4 67 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 M0QXV9 152 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 LST1O00453 97 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 TCL1BO95988 128 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 C9orf129Q5T035 196 aaKnown RBP6.84□□□□□ -1.31
CLN3-248ENST00000636355 Q8N814 137 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 OR13C6PQ8NH95 151 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 SMIM11BQ8TCY0 68 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 LINC00474Q9P2X8 69 aa6.84□□□□□ -1.31
CLN3-248ENST00000636355 A0A087WTM6 91 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 A0A1B0GX51 115 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 NCR3O14931 201 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 GAGE2EQ4V326 116 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 C9orf163Q8N9P6 203 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 NKAPP1Q8N9T2 125 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 Q8NDZ9 215 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 GAGE2DQ9UEU5 116 aa6.83□□□□□ -1.32
CLN3-248ENST00000636355 TRBV7-6A0A0J9YX20 115 aa6.82□□□□□ -1.32
CLN3-248ENST00000636355 H3BMG7 143 aa6.82□□□□□ -1.32
CLN3-248ENST00000636355 TRACP01848 142 aa6.82□□□□□ -1.32
CLN3-248ENST00000636355 LINC01600Q96MT4 127 aa6.82□□□□□ -1.32
CLN3-248ENST00000636355 M0R2N4 97 aa6.81□□□□□ -1.32
CLN3-248ENST00000636355 TRAV23DV6A0A075B6W5 121 aa6.8□□□□□ -1.32
CLN3-248ENST00000636355 H3BT86 120 aa6.8□□□□□ -1.32
CLN3-248ENST00000636355 LINC01620Q4KN68 170 aa6.8□□□□□ -1.32
CLN3-248ENST00000636355 PRO0461Q9UI25 63 aa6.8□□□□□ -1.32
CLN3-248ENST00000636355 TRBV10-3A0A0K0K1G6 114 aa6.79□□□□□ -1.32
CLN3-248ENST00000636355 SNCGO76070 127 aa6.79□□□□□ -1.32
CLN3-248ENST00000636355 DIRC1Q969H9 104 aa6.79□□□□□ -1.32
CLN3-248ENST00000636355 BIRC6Q9NR09 4857 aa6.79□□□□□ -1.32
CLN3-248ENST00000636355 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.78□□□□□ -1.32
CLN3-248ENST00000636355 A0A096LNI7 61 aa6.78□□□□□ -1.32
CLN3-248ENST00000636355 PRYO14603 147 aa6.78□□□□□ -1.32
CLN3-248ENST00000636355 PRR3P79522 188 aaKnown RBP6.78□□□□□ -1.32
CLN3-248ENST00000636355 GAGE2BQ13066 116 aa6.78□□□□□ -1.32
CLN3-248ENST00000636355 CLEC2BQ92478 149 aa6.78□□□□□ -1.32
CLN3-248ENST00000636355 KCNQ1DNQ9H478 68 aa6.78□□□□□ -1.32
CLN3-248ENST00000636355 ZNF73O43830 326 aaPredicted RBP6.77□□□□□ -1.33
CLN3-248ENST00000636355 C6orf99Q4VX62 202 aa6.77□□□□□ -1.33
CLN3-248ENST00000636355 SERTAD4-AS1Q5TG53 156 aa6.77□□□□□ -1.33
CLN3-248ENST00000636355 C9JAW5 83 aa6.76□□□□□ -1.33
CLN3-248ENST00000636355 SLC25A20O43772 301 aa6.76□□□□□ -1.33
CLN3-248ENST00000636355 DNAL4O96015 105 aa6.76□□□□□ -1.33
CLN3-248ENST00000636355 SDIM1Q6ZPB5 146 aa6.76□□□□□ -1.33
CLN3-248ENST00000636355 MRPL55Q7Z7F7 128 aaKnown RBP6.76□□□□□ -1.33
CLN3-248ENST00000636355 C7orf33Q8WU49 177 aa6.76□□□□□ -1.33
CLN3-248ENST00000636355 LCE6AA0A183 80 aa6.75□□□□□ -1.33
CLN3-248ENST00000636355 H3BQ85 93 aa6.75□□□□□ -1.33
CLN3-248ENST00000636355 RTL8CO15255 209 aa6.75□□□□□ -1.33
CLN3-248ENST00000636355 ELOF1P60002 83 aaKnown RBP6.75□□□□□ -1.33
CLN3-248ENST00000636355 LINC00167Q96N53 147 aa6.75□□□□□ -1.33
CLN3-248ENST00000636355 EPPK1P58107 5090 aaKnown RBP6.75□□□□□ -1.33
CLN3-248ENST00000636355 IGLV1-50A0A075B6I6 118 aa6.74□□□□□ -1.33
CLN3-248ENST00000636355 EPM2AB3EWF7 344 aa6.74□□□□□ -1.33
CLN3-248ENST00000636355 GHRHP01286 108 aa6.74□□□□□ -1.33
CLN3-248ENST00000636355 ANKRD29Q8N6D5 301 aa6.74□□□□□ -1.33
CLN3-248ENST00000636355 FAM218AQ96MZ4 157 aa6.74□□□□□ -1.33
CLN3-248ENST00000636355 SPRR1AP35321 89 aa6.73□□□□□ -1.33
CLN3-248ENST00000636355 LINC00575Q6W349 94 aa6.73□□□□□ -1.33
CLN3-248ENST00000636355 FAM19A5Q7Z5A7 132 aaPredicted RBP6.73□□□□□ -1.33
CLN3-248ENST00000636355 TEN1Q86WV5 123 aa6.73□□□□□ -1.33
CLN3-248ENST00000636355 KRTAP7-1Q8IUC3 87 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms