RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 J3QQQ9 107 aa8.28□□□□□ -1.08
LINC00540-202ENST00000616974 LEPROTO15243 131 aa8.28□□□□□ -1.08
LINC00540-202ENST00000616974 EIF4EBP3O60516 100 aaPredicted RBP8.28□□□□□ -1.08
LINC00540-202ENST00000616974 PET117Q6UWS5 81 aa8.27□□□□□ -1.08
LINC00540-202ENST00000616974 LINC00158P58513 81 aa8.27□□□□□ -1.09
LINC00540-202ENST00000616974 C1orf137Q5JT78 98 aa8.27□□□□□ -1.09
LINC00540-202ENST00000616974 MIR7-3HGQ8N6C7 128 aa8.26□□□□□ -1.09
LINC00540-202ENST00000616974 LINC00167Q96N53 147 aa8.26□□□□□ -1.09
LINC00540-202ENST00000616974 VPREB1P12018 145 aa8.25□□□□□ -1.09
LINC00540-202ENST00000616974 UBE2BP63146 152 aa8.25□□□□□ -1.09
LINC00540-202ENST00000616974 ANKRD39Q53RE8 183 aa8.25□□□□□ -1.09
LINC00540-202ENST00000616974 MEIG1Q5JSS6 88 aa8.25□□□□□ -1.09
LINC00540-202ENST00000616974 E9PLD3 99 aa8.24□□□□□ -1.09
LINC00540-202ENST00000616974 MRPL55Q7Z7F7 128 aaKnown RBP8.24□□□□□ -1.09
LINC00540-202ENST00000616974 IGKV2-28A0A075B6P5 120 aa8.24□□□□□ -1.09
LINC00540-202ENST00000616974 IGKV2D-28P01615 120 aa8.24□□□□□ -1.09
LINC00540-202ENST00000616974 SRSF9Q13242 221 aaKnown RBP eCLIP8.24□□□□□ -1.09
LINC00540-202ENST00000616974 ADAMTSL4-AS1Q5T5F5 129 aa8.24□□□□□ -1.09
LINC00540-202ENST00000616974 TP73-AS1Q9UF72 201 aa8.24□□□□□ -1.09
LINC00540-202ENST00000616974 NPC2P61916 151 aa8.23□□□□□ -1.09
LINC00540-202ENST00000616974 C5orf52A6NGY3 159 aa8.23□□□□□ -1.09
LINC00540-202ENST00000616974 S100A6P06703 90 aa8.23□□□□□ -1.09
LINC00540-202ENST00000616974 COX17Q14061 63 aa8.23□□□□□ -1.09
LINC00540-202ENST00000616974 PLEKHB2Q96CS7 222 aa8.23□□□□□ -1.09
LINC00540-202ENST00000616974 MYMXA0A1B0GTQ4 84 aa8.22□□□□□ -1.09
LINC00540-202ENST00000616974 LGALS3P17931 250 aaKnown RBP8.22□□□□□ -1.09
LINC00540-202ENST00000616974 HERVK_113P61574 105 aa8.22□□□□□ -1.09
LINC00540-202ENST00000616974 A0A0J9YXY3 114 aa8.21□□□□□ -1.09
LINC00540-202ENST00000616974 SOSTDC1Q6X4U4 206 aa8.21□□□□□ -1.09
LINC00540-202ENST00000616974 S100A2P29034 98 aa8.21□□□□□ -1.1
LINC00540-202ENST00000616974 PLA2G2DQ9UNK4 145 aa8.21□□□□□ -1.1
LINC00540-202ENST00000616974 IGLV5-37A0A075B6J1 123 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 TMEM238C9JI98 176 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 IGLV7-43P04211 117 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 MT1HL1P0DM35 61 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 PCP2Q8IVA1 136 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 BOD1L2Q8IYS8 172 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 LITAFQ99732 161 aa8.2□□□□□ -1.1
LINC00540-202ENST00000616974 NCR3O14931 201 aa8.19□□□□□ -1.1
LINC00540-202ENST00000616974 HERV-K104P63124 156 aa8.19□□□□□ -1.1
LINC00540-202ENST00000616974 NKAPP1Q8N9T2 125 aa8.19□□□□□ -1.1
LINC00540-202ENST00000616974 HMCN2Q8NDA2 5059 aa8.19□□□□□ -1.1
LINC00540-202ENST00000616974 SFTA2Q6UW10 78 aa8.18□□□□□ -1.1
LINC00540-202ENST00000616974 KRTAP29-1A8MX34 341 aaPredicted RBP8.18□□□□□ -1.1
LINC00540-202ENST00000616974 NMUP48645 174 aa8.18□□□□□ -1.1
LINC00540-202ENST00000616974 TMA7Q9Y2S6 64 aaKnown RBP8.18□□□□□ -1.1
LINC00540-202ENST00000616974 ZNF815PA8K554 130 aa8.17□□□□□ -1.1
LINC00540-202ENST00000616974 IGLV1-50A0A075B6I6 118 aa8.16□□□□□ -1.1
LINC00540-202ENST00000616974 J3QL48 77 aa8.15□□□□□ -1.11
LINC00540-202ENST00000616974 LBHQ53QV2 105 aaPredicted RBP8.15□□□□□ -1.11
LINC00540-202ENST00000616974 SPINK6Q6UWN8 80 aa8.15□□□□□ -1.11
LINC00540-202ENST00000616974 C20orf202A1L168 122 aa8.14□□□□□ -1.11
LINC00540-202ENST00000616974 PRLHP81277 87 aa8.14□□□□□ -1.11
LINC00540-202ENST00000616974 M0R378 163 aa8.13□□□□□ -1.11
LINC00540-202ENST00000616974 KRTAP1-4P0C5Y4 121 aa8.12□□□□□ -1.11
LINC00540-202ENST00000616974 TMEM126AQ9H061 195 aa8.12□□□□□ -1.11
LINC00540-202ENST00000616974 TRBV10-3A0A0K0K1G6 114 aa8.12□□□□□ -1.11
LINC00540-202ENST00000616974 SCGB1D1O95968 90 aa8.12□□□□□ -1.11
LINC00540-202ENST00000616974 RPL24P83731 157 aaKnown RBP8.12□□□□□ -1.11
LINC00540-202ENST00000616974 KRTAP13-1Q8IUC0 172 aa8.12□□□□□ -1.11
LINC00540-202ENST00000616974 BCE1O60756 84 aa8.11□□□□□ -1.11
LINC00540-202ENST00000616974 ANAPC11Q9NYG5 84 aa8.11□□□□□ -1.11
LINC00540-202ENST00000616974 LOC107984156A0A0G2JMH3 177 aa8.11□□□□□ -1.11
LINC00540-202ENST00000616974 H0Y9J4 135 aa8.11□□□□□ -1.11
LINC00540-202ENST00000616974 ARL17AQ8IVW1 177 aa8.11□□□□□ -1.11
LINC00540-202ENST00000616974 ZNF861PO60384 105 aa8.1□□□□□ -1.11
LINC00540-202ENST00000616974 OXTP01178 125 aa8.1□□□□□ -1.11
LINC00540-202ENST00000616974 LINC00308Q8TCZ7 52 aa8.1□□□□□ -1.11
LINC00540-202ENST00000616974 LINC01600Q96MT4 127 aa8.1□□□□□ -1.11
LINC00540-202ENST00000616974 LRP2P98164 4655 aa8.09□□□□□ -1.11
LINC00540-202ENST00000616974 REG3GQ6UW15 175 aa8.09□□□□□ -1.11
LINC00540-202ENST00000616974 LINC00587B1AMM8 73 aa8.08□□□□□ -1.12
LINC00540-202ENST00000616974 PRR26Q8N8Z3 221 aa8.08□□□□□ -1.12
LINC00540-202ENST00000616974 SCGB1D4Q6XE38 83 aa8.08□□□□□ -1.12
LINC00540-202ENST00000616974 FAM19A1Q7Z5A9 133 aa8.08□□□□□ -1.12
LINC00540-202ENST00000616974 MIEN1Q9BRT3 115 aa8.07□□□□□ -1.12
LINC00540-202ENST00000616974 UBR4Q5T4S7 5183 aa8.07□□□□□ -1.12
LINC00540-202ENST00000616974 DIRC1Q969H9 104 aa8.06□□□□□ -1.12
LINC00540-202ENST00000616974 KRTAP4-16G5E9R7 235 aaPredicted RBP8.06□□□□□ -1.12
LINC00540-202ENST00000616974 KRTAP10-8P60410 259 aa8.06□□□□□ -1.12
LINC00540-202ENST00000616974 TIMM17BO60830 172 aa8.05□□□□□ -1.12
LINC00540-202ENST00000616974 UBE2AP49459 152 aa8.05□□□□□ -1.12
LINC00540-202ENST00000616974 A0A087X002 238 aa8.05□□□□□ -1.12
LINC00540-202ENST00000616974 DDTP30046 118 aa8.05□□□□□ -1.12
LINC00540-202ENST00000616974 LPAP08519 4548 aa8.05□□□□□ -1.12
LINC00540-202ENST00000616974 LINC00337Q8N6G1 96 aa8.04□□□□□ -1.12
LINC00540-202ENST00000616974 KCNQ1DNQ9H478 68 aa8.04□□□□□ -1.12
LINC00540-202ENST00000616974 PAM16Q9Y3D7 125 aa8.04□□□□□ -1.12
LINC00540-202ENST00000616974 IGLV6-57P01721 117 aa8.03□□□□□ -1.12
LINC00540-202ENST00000616974 PYY3Q5JQD4 70 aa8.03□□□□□ -1.12
LINC00540-202ENST00000616974 SPANXB1Q9NS25 103 aaPredicted RBP8.03□□□□□ -1.12
LINC00540-202ENST00000616974 SPRR1AP35321 89 aa8.03□□□□□ -1.12
LINC00540-202ENST00000616974 RPL28P46779 137 aaKnown RBP8.03□□□□□ -1.12
LINC00540-202ENST00000616974 MUSTN1Q8IVN3 82 aa8.03□□□□□ -1.12
LINC00540-202ENST00000616974 C14orf144Q96I85 54 aa8.03□□□□□ -1.12
LINC00540-202ENST00000616974 HIGD2AQ9BW72 106 aa8.03□□□□□ -1.12
LINC00540-202ENST00000616974 NDUFC2O95298 119 aa8.02□□□□□ -1.13
LINC00540-202ENST00000616974 SPANXDQ9BXN6 97 aa8.02□□□□□ -1.13
LINC00540-202ENST00000616974 SPANXCQ9NY87 97 aa8.02□□□□□ -1.13
LINC00540-202ENST00000616974 JOSD1Q15040 202 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms