RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 TMEM126AQ9H061 195 aa15.41■□□□□ 0.06
PNKP-216ENST00000601816 A0A0U1RRA0 63 aa15.4■□□□□ 0.06
PNKP-216ENST00000601816 TMEM238C9JI98 176 aa15.4■□□□□ 0.06
PNKP-216ENST00000601816 H0Y8G0 127 aa15.39■□□□□ 0.05
PNKP-216ENST00000601816 PRLHP81277 87 aa15.39■□□□□ 0.05
PNKP-216ENST00000601816 FAM19A1Q7Z5A9 133 aa15.39■□□□□ 0.05
PNKP-216ENST00000601816 TYMSOSQ8TAI1 123 aa15.39■□□□□ 0.05
PNKP-216ENST00000601816 M0R378 163 aa15.37■□□□□ 0.05
PNKP-216ENST00000601816 ATP6V1G1O75348 118 aa15.37■□□□□ 0.05
PNKP-216ENST00000601816 SERF1AO75920 110 aa15.37■□□□□ 0.05
PNKP-216ENST00000601816 ANAPC11Q9NYG5 84 aa15.37■□□□□ 0.05
PNKP-216ENST00000601816 LEPROTL1O95214 131 aa15.36■□□□□ 0.05
PNKP-216ENST00000601816 SMIM13P0DJ93 91 aa15.36■□□□□ 0.05
PNKP-216ENST00000601816 HERV-K104P63124 156 aa15.36■□□□□ 0.05
PNKP-216ENST00000601816 MEIG1Q5JSS6 88 aa15.36■□□□□ 0.05
PNKP-216ENST00000601816 LPAP08519 4548 aa15.35■□□□□ 0.05
PNKP-216ENST00000601816 PRR4Q16378 134 aa15.35■□□□□ 0.05
PNKP-216ENST00000601816 SLC7A5P1Q8MH63 180 aa15.35■□□□□ 0.05
PNKP-216ENST00000601816 LINC00310P59036 64 aa15.34■□□□□ 0.05
PNKP-216ENST00000601816 TSPAN13O95857 204 aa15.33■□□□□ 0.04
PNKP-216ENST00000601816 FAM229BQ4G0N7 80 aa15.33■□□□□ 0.04
PNKP-216ENST00000601816 NDUFA12Q9UI09 145 aa15.33■□□□□ 0.04
PNKP-216ENST00000601816 RNF213Q63HN8 5207 aa15.32■□□□□ 0.04
PNKP-216ENST00000601816 LINC00587B1AMM8 73 aa15.31■□□□□ 0.04
PNKP-216ENST00000601816 MIR7-3HGQ8N6C7 128 aa15.31■□□□□ 0.04
PNKP-216ENST00000601816 HSPB8Q9UJY1 196 aa15.31■□□□□ 0.04
PNKP-216ENST00000601816 MYMXA0A1B0GTQ4 84 aa15.3■□□□□ 0.04
PNKP-216ENST00000601816 BOD1L2Q8IYS8 172 aa15.3■□□□□ 0.04
PNKP-216ENST00000601816 PLNP26678 52 aa15.29■□□□□ 0.04
PNKP-216ENST00000601816 KRTAP13-2Q52LG2 175 aa15.29■□□□□ 0.04
PNKP-216ENST00000601816 COLCA2A8K830 154 aa15.27■□□□□ 0.04
PNKP-216ENST00000601816 FABP4P15090 132 aa15.27■□□□□ 0.04
PNKP-216ENST00000601816 MAP1LC3CQ9BXW4 147 aa15.27■□□□□ 0.04
PNKP-216ENST00000601816 LEPROTO15243 131 aa15.26■□□□□ 0.03
PNKP-216ENST00000601816 PLEKHB2Q96CS7 222 aa15.26■□□□□ 0.03
PNKP-216ENST00000601816 IGKV2D-26A0A0A0MRZ7 120 aa15.25■□□□□ 0.03
PNKP-216ENST00000601816 NCR3O14931 201 aa15.25■□□□□ 0.03
PNKP-216ENST00000601816 TSPEAR-AS2P59090 65 aa15.25■□□□□ 0.03
PNKP-216ENST00000601816 HIGD2AQ9BW72 106 aa15.25■□□□□ 0.03
PNKP-216ENST00000601816 DPM2O94777 84 aa15.24■□□□□ 0.03
PNKP-216ENST00000601816 PRYO14603 147 aa15.23■□□□□ 0.03
PNKP-216ENST00000601816 HERVK_113P61574 105 aa15.23■□□□□ 0.03
PNKP-216ENST00000601816 PMCHL2Q9BQD1 86 aa15.22■□□□□ 0.03
PNKP-216ENST00000601816 LINC00304Q8N9R0 145 aa15.21■□□□□ 0.03
PNKP-216ENST00000601816 J3QQQ9 107 aa15.2■□□□□ 0.02
PNKP-216ENST00000601816 IGKCP01834 107 aa15.19■□□□□ 0.02
PNKP-216ENST00000601816 KCNQ1DNQ9H478 68 aa15.18■□□□□ 0.02
PNKP-216ENST00000601816 LINC00337Q8N6G1 96 aa15.17■□□□□ 0.02
PNKP-216ENST00000601816 DAND5Q8N907 189 aa15.17■□□□□ 0.02
PNKP-216ENST00000601816 LGALS3P17931 250 aaKnown RBP15.16■□□□□ 0.02
PNKP-216ENST00000601816 NMUP48645 174 aa15.16■□□□□ 0.02
PNKP-216ENST00000601816 TRBV10-3A0A0K0K1G6 114 aa15.15■□□□□ 0.02
PNKP-216ENST00000601816 SPRR1AP35321 89 aa15.15■□□□□ 0.02
PNKP-216ENST00000601816 SPRR4Q96PI1 79 aa15.15■□□□□ 0.02
PNKP-216ENST00000601816 ZNF706Q9Y5V0 76 aaPredicted RBP15.15■□□□□ 0.02
PNKP-216ENST00000601816 ETDCA0A1B0GVM5 59 aa15.14■□□□□ 0.01
PNKP-216ENST00000601816 LOC107984156A0A0G2JMH3 177 aa15.13■□□□□ 0.01
PNKP-216ENST00000601816 S100A12P80511 92 aa15.13■□□□□ 0.01
PNKP-216ENST00000601816 ARL17AQ8IVW1 177 aa15.13■□□□□ 0.01
PNKP-216ENST00000601816 C3orf22Q8N5N4 141 aa15.13■□□□□ 0.01
PNKP-216ENST00000601816 MIEN1Q9BRT3 115 aa15.12■□□□□ 0.01
PNKP-216ENST00000601816 KRTAP4-16G5E9R7 235 aaPredicted RBP15.1■□□□□ 0.01
PNKP-216ENST00000601816 TRBV10-2A0A0K0K1G8 114 aa15.09■□□□□ 0.01
PNKP-216ENST00000601816 DDTP30046 118 aa15.08■□□□□ 0
PNKP-216ENST00000601816 CTAG1AP78358 180 aa15.08■□□□□ 0
PNKP-216ENST00000601816 SMCR5Q8TEV8 140 aa15.08■□□□□ 0
PNKP-216ENST00000601816 RETNLBQ9BQ08 111 aa15.08■□□□□ 0
PNKP-216ENST00000601816 SPANXB1Q9NS25 103 aaPredicted RBP15.08■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BKO60814 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BJP06899 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BOP23527 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BBP33778 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BDP58876 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BCP62807 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST2H2BEQ16778 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BHQ93079 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BNQ99877 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 HIST1H2BMQ99879 126 aa15.07■□□□□ 0
PNKP-216ENST00000601816 E9PLD3 99 aa15.06■□□□□ 0
PNKP-216ENST00000601816 SYS1-DBNDD2H3BUS1 97 aa15.05■□□□□ -0
PNKP-216ENST00000601816 A0A0J9YXY3 114 aa15.03■□□□□ -0
PNKP-216ENST00000601816 NDUFC2O95298 119 aa15.03■□□□□ -0
PNKP-216ENST00000601816 B5MCH6 92 aa15.02■□□□□ -0
PNKP-216ENST00000601816 SPAG11AQ6PDA7 123 aa15.02■□□□□ -0
PNKP-216ENST00000601816 PPDPFQ9H3Y8 114 aa15.02■□□□□ -0
PNKP-216ENST00000601816 S100A7L2Q5SY68 101 aa15.01□□□□□ -0.01
PNKP-216ENST00000601816 NPC2P61916 151 aa15□□□□□ -0.01
PNKP-216ENST00000601816 ADAMTSL4-AS1Q5T5F5 129 aa14.99□□□□□ -0.01
PNKP-216ENST00000601816 SOSTDC1Q6X4U4 206 aa14.99□□□□□ -0.01
PNKP-216ENST00000601816 IGLV6-57P01721 117 aa14.98□□□□□ -0.01
PNKP-216ENST00000601816 LINC00483Q53H64 154 aa14.97□□□□□ -0.01
PNKP-216ENST00000601816 C4orf48Q5BLP8 95 aa14.97□□□□□ -0.01
PNKP-216ENST00000601816 LINC01545Q5VT33 79 aa14.97□□□□□ -0.01
PNKP-216ENST00000601816 EIF4EBP3O60516 100 aaPredicted RBP14.96□□□□□ -0.01
PNKP-216ENST00000601816 PET117Q6UWS5 81 aa14.96□□□□□ -0.01
PNKP-216ENST00000601816 Q6ZRX8 168 aa14.96□□□□□ -0.01
PNKP-216ENST00000601816 IGLV7-46A0A075B6I9 117 aa14.95□□□□□ -0.02
PNKP-216ENST00000601816 ERC2-IT1O76042 136 aa14.95□□□□□ -0.02
PNKP-216ENST00000601816 GAGE2AQ6NT46 116 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms