RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 HIST1H2BKO60814 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BJP06899 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BOP23527 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 DDTP30046 118 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BBP33778 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BDP58876 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BCP62807 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HERVK_113P63121 156 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST2H2BEQ16778 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 KRTAP13-3Q3SY46 172 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.46□□□□□ -1.86
VRK3-220ENST00000600259 ATP5L2Q7Z4Y8 100 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BHQ93079 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BNQ99877 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BMQ99879 126 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 LAMTOR2Q9Y2Q5 125 aa3.46□□□□□ -1.86
VRK3-220ENST00000600259 IGLV5-45A0A087WSX0 123 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 IGKV2D-26A0A0A0MRZ7 120 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 CXCL5P42830 114 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 UBE2AP49459 152 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 NDUFA6P56556 154 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 JOSD1Q15040 202 aaPredicted RBP3.45□□□□□ -1.86
VRK3-220ENST00000600259 PDZD11Q5EBL8 140 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 Q8NDZ9 215 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 MAP1LC3AQ9H492 121 aa3.45□□□□□ -1.86
VRK3-220ENST00000600259 K7EMI3 77 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 M0R378 163 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 VPREB1P12018 145 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 LINC01547P58512 204 aaPredicted RBP3.44□□□□□ -1.86
VRK3-220ENST00000600259 SEC11AP67812 179 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 PRLHP81277 87 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 KRTAP19-2Q3LHN2 52 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 ORMDL2Q53FV1 153 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 SPAG11AQ6PDA7 123 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 FP248Q71RG6 208 aaPredicted RBP3.44□□□□□ -1.86
VRK3-220ENST00000600259 COX7B2Q8TF08 81 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 TIMM17AQ99595 171 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 TMEM126AQ9H061 195 aa3.44□□□□□ -1.86
VRK3-220ENST00000600259 IGKV2-28A0A075B6P5 120 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 A0A1B0GV90 55 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 TINCRA0A1B0GVN0 87 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 TMEM238C9JI98 176 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 IGKV2D-28P01615 120 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 TRGC2P03986 189 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 TOMM6Q96B49 74 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 HIST1H2BLQ99880 126 aa3.43□□□□□ -1.86
VRK3-220ENST00000600259 GEMIN7Q9H840 131 aaKnown RBP3.43□□□□□ -1.86
VRK3-220ENST00000600259 FABP4P15090 132 aa3.42□□□□□ -1.86
VRK3-220ENST00000600259 PAPPA-AS1Q5QFB9 102 aa3.42□□□□□ -1.86
VRK3-220ENST00000600259 ERASQ7Z444 233 aa3.42□□□□□ -1.86
VRK3-220ENST00000600259 FAM19A1Q7Z5A9 133 aa3.42□□□□□ -1.86
VRK3-220ENST00000600259 NKAPP1Q8N9T2 125 aa3.42□□□□□ -1.86
VRK3-220ENST00000600259 SPRR4Q96PI1 79 aa3.42□□□□□ -1.86
VRK3-220ENST00000600259 NXT2Q9NPJ8 142 aaKnown RBP3.42□□□□□ -1.86
VRK3-220ENST00000600259 IGLV5-39A0A0G2JS06 123 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 LINC01546A6NGU7 62 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 SPINK8P0C7L1 97 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 LINC00337Q8N6G1 96 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 GNB1LQ9BYB4 327 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 CST9LQ9H4G1 147 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 SND1-IT1Q9HBX3 110 aa3.41□□□□□ -1.86
VRK3-220ENST00000600259 TRAV9-1A0A075B6T8 112 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.4□□□□□ -1.87
VRK3-220ENST00000600259 M0R143 59 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 LINC00614P0C842 121 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 G0S2P27469 103 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 SEC61BP60468 96 aaKnown RBP3.4□□□□□ -1.87
VRK3-220ENST00000600259 KRTAP19-1Q8IUB9 90 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 DAND5Q8N907 189 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 SCGB3A1Q96QR1 104 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 KRTAP4-12Q9BQ66 201 aa3.4□□□□□ -1.87
VRK3-220ENST00000600259 KRTAP4-16G5E9R7 235 aaPredicted RBP3.39□□□□□ -1.87
VRK3-220ENST00000600259 PFN2P35080 140 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 MT1HP80294 61 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 KIAA1644Q3SXP7 199 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 Q8NBF4 154 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 HIGD2AQ9BW72 106 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 PRO1933Q9H354 126 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 CBY1Q9Y3M2 126 aa3.39□□□□□ -1.87
VRK3-220ENST00000600259 ATP5LO75964 103 aa3.38□□□□□ -1.87
VRK3-220ENST00000600259 SPINK1P00995 79 aa3.38□□□□□ -1.87
VRK3-220ENST00000600259 SPRR1AP35321 89 aa3.38□□□□□ -1.87
VRK3-220ENST00000600259 RPL24P83731 157 aaKnown RBP3.38□□□□□ -1.87
VRK3-220ENST00000600259 PMVKQ15126 192 aa3.38□□□□□ -1.87
VRK3-220ENST00000600259 SNHG12Q9BXW3 62 aa3.38□□□□□ -1.87
VRK3-220ENST00000600259 ERG28Q9UKR5 140 aa3.38□□□□□ -1.87
VRK3-220ENST00000600259 DLEU1O43261 78 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 IGLC3P0DOY3 106 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 ZNF22P17026 224 aaPredicted RBP3.37□□□□□ -1.87
VRK3-220ENST00000600259 COX17Q14061 63 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 LINC00483Q53H64 154 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 Q8N377 158 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 SMCR5Q8TEV8 140 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 ZNF625Q96I27 306 aaPredicted RBP3.37□□□□□ -1.87
VRK3-220ENST00000600259 MIEN1Q9BRT3 115 aa3.37□□□□□ -1.87
VRK3-220ENST00000600259 A0A096LNJ9 63 aa3.36□□□□□ -1.87
VRK3-220ENST00000600259 LINC01549A6NIU2 74 aa3.36□□□□□ -1.87
VRK3-220ENST00000600259 RPS29P62273 56 aaKnown RBP3.36□□□□□ -1.87
VRK3-220ENST00000600259 COX19Q49B96 90 aa3.36□□□□□ -1.87
VRK3-220ENST00000600259 KCNQ1DNQ9H478 68 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms