RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	CHTF8	P0CG12	524 aa		14	□□□□□ -0.17
LTBP4-227	ENST00000600026	LITAF	Q99732	161 aa		14	□□□□□ -0.17
LTBP4-227	ENST00000600026	PRO1933	Q9H354	126 aa		14	□□□□□ -0.17
LTBP4-227	ENST00000600026	ADAMTSL4-AS1	Q5T5F5	129 aa		13.99	□□□□□ -0.17
LTBP4-227	ENST00000600026	SND1-IT1	Q9HBX3	110 aa		13.99	□□□□□ -0.17
LTBP4-227	ENST00000600026	DAND5	Q8N907	189 aa		13.98	□□□□□ -0.17
LTBP4-227	ENST00000600026	SPANXD	Q9BXN6	97 aa		13.98	□□□□□ -0.17
LTBP4-227	ENST00000600026	SPANXC	Q9NY87	97 aa		13.98	□□□□□ -0.17
LTBP4-227	ENST00000600026		Q6ZVH6	145 aa		13.97	□□□□□ -0.17
LTBP4-227	ENST00000600026	SCX	Q7RTU7	201 aa		13.97	□□□□□ -0.17
LTBP4-227	ENST00000600026	XAGE1A	Q9HD64	81 aa		13.97	□□□□□ -0.17
LTBP4-227	ENST00000600026	HIGD1B	Q9P298	99 aa		13.97	□□□□□ -0.17
LTBP4-227	ENST00000600026	TSTD3	H0UI37	97 aa		13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	SRSF9	Q13242	221 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	SPACA4	Q8TDM5	124 aa		13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	COPS9	Q8WXC6	57 aa		13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	DPH3	Q96FX2	82 aa		13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	MIEN1	Q9BRT3	115 aa		13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	SPANXB1	Q9NS25	103 aa	Predicted RBP	13.96	□□□□□ -0.17
LTBP4-227	ENST00000600026	C9orf129	Q5T035	196 aa	Known RBP	13.94	□□□□□ -0.18
LTBP4-227	ENST00000600026	IFITM1	P13164	125 aa		13.93	□□□□□ -0.18
LTBP4-227	ENST00000600026	NPC2	P61916	151 aa		13.93	□□□□□ -0.18
LTBP4-227	ENST00000600026	C2orf91	Q6ZV80	131 aa		13.93	□□□□□ -0.18
LTBP4-227	ENST00000600026	CIRBP-AS1	Q8TBR5	109 aa		13.93	□□□□□ -0.18
LTBP4-227	ENST00000600026	LINC00308	Q8TCZ7	52 aa		13.92	□□□□□ -0.18
LTBP4-227	ENST00000600026	HIST1H4G	Q99525	98 aa		13.92	□□□□□ -0.18
LTBP4-227	ENST00000600026	HNRNPA3	P51991	378 aa	Known RBP	13.91	□□□□□ -0.18
LTBP4-227	ENST00000600026	LOC107984156	A0A0G2JMH3	177 aa		13.9	□□□□□ -0.18
LTBP4-227	ENST00000600026	ARL17A	Q8IVW1	177 aa		13.9	□□□□□ -0.18
LTBP4-227	ENST00000600026		A0A087WYN8	130 aa		13.89	□□□□□ -0.19
LTBP4-227	ENST00000600026	RPL24	P83731	157 aa	Known RBP	13.89	□□□□□ -0.19
LTBP4-227	ENST00000600026	PLA2G2D	Q9UNK4	145 aa		13.89	□□□□□ -0.19
LTBP4-227	ENST00000600026	TAL2	Q16559	108 aa		13.88	□□□□□ -0.19
LTBP4-227	ENST00000600026	MUSTN1	Q8IVN3	82 aa		13.88	□□□□□ -0.19
LTBP4-227	ENST00000600026	SOSTDC1	Q6X4U4	206 aa		13.87	□□□□□ -0.19
LTBP4-227	ENST00000600026	PPDPF	Q9H3Y8	114 aa		13.87	□□□□□ -0.19
LTBP4-227	ENST00000600026	FAT1	Q14517	4588 aa		13.86	□□□□□ -0.19
LTBP4-227	ENST00000600026	SMR3B	P02814	79 aa	Predicted RBP	13.86	□□□□□ -0.19
LTBP4-227	ENST00000600026	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	13.86	□□□□□ -0.19
LTBP4-227	ENST00000600026	PLAC8	Q9NZF1	115 aa		13.86	□□□□□ -0.19
LTBP4-227	ENST00000600026		A0A1W2PNN7	141 aa		13.85	□□□□□ -0.19
LTBP4-227	ENST00000600026	FAM168B	A1KXE4	195 aa		13.85	□□□□□ -0.19
LTBP4-227	ENST00000600026	HERC1	Q15751	4861 aa		13.84	□□□□□ -0.19
LTBP4-227	ENST00000600026	HSD52	Q0P140	79 aa		13.84	□□□□□ -0.19
LTBP4-227	ENST00000600026	SERTAD4-AS1	Q5TG53	156 aa		13.84	□□□□□ -0.19
LTBP4-227	ENST00000600026	NKAPP1	Q8N9T2	125 aa		13.84	□□□□□ -0.19
LTBP4-227	ENST00000600026	EIF4EBP3	O60516	100 aa	Predicted RBP	13.83	□□□□□ -0.2
LTBP4-227	ENST00000600026	NDUFC2	O95298	119 aa		13.83	□□□□□ -0.2
LTBP4-227	ENST00000600026	VPREB1	P12018	145 aa		13.83	□□□□□ -0.2
LTBP4-227	ENST00000600026		Q8N1X5	172 aa		13.82	□□□□□ -0.2
LTBP4-227	ENST00000600026	IGLV5-37	A0A075B6J1	123 aa		13.81	□□□□□ -0.2
LTBP4-227	ENST00000600026	CEND1	Q8N111	149 aa		13.8	□□□□□ -0.2
LTBP4-227	ENST00000600026	LINC00528	Q8N1L1	170 aa		13.8	□□□□□ -0.2
LTBP4-227	ENST00000600026		M0QXV9	152 aa		13.79	□□□□□ -0.2
LTBP4-227	ENST00000600026		Q8NDZ9	215 aa		13.79	□□□□□ -0.2
LTBP4-227	ENST00000600026	C22orf24	Q9Y442	160 aa		13.79	□□□□□ -0.2
LTBP4-227	ENST00000600026	EPM2A	B3EWF7	344 aa		13.78	□□□□□ -0.2
LTBP4-227	ENST00000600026	KRTAP7-1	Q8IUC3	87 aa		13.78	□□□□□ -0.2
LTBP4-227	ENST00000600026		M0R378	163 aa		13.77	□□□□□ -0.21
LTBP4-227	ENST00000600026	NCR3	O14931	201 aa		13.77	□□□□□ -0.21
LTBP4-227	ENST00000600026	LBH	Q53QV2	105 aa	Predicted RBP	13.77	□□□□□ -0.21
LTBP4-227	ENST00000600026	VPS13B	Q7Z7G8	4022 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	TRBV10-2	A0A0K0K1G8	114 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	TMEM238L	A0A1B0GVL6	79 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026		A4D1N5	150 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026		A6NJY4	79 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	DDT	P30046	118 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	CTAG1A	P78358	180 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	PRR3	P79522	188 aa	Known RBP	13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026		Q5VSD8	79 aa		13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	MRPL55	Q7Z7F7	128 aa	Known RBP	13.76	□□□□□ -0.21
LTBP4-227	ENST00000600026	PHF5A	Q7RTV0	110 aa	Known RBP	13.74	□□□□□ -0.21
LTBP4-227	ENST00000600026	FAM229A	H3BQW9	127 aa		13.73	□□□□□ -0.21
LTBP4-227	ENST00000600026	C7orf33	Q8WU49	177 aa		13.73	□□□□□ -0.21
LTBP4-227	ENST00000600026	GAGE10	A6NGK3	116 aa		13.72	□□□□□ -0.21
LTBP4-227	ENST00000600026	LINC00167	Q96N53	147 aa		13.72	□□□□□ -0.21
LTBP4-227	ENST00000600026	IGKV2-28	A0A075B6P5	120 aa		13.71	□□□□□ -0.21
LTBP4-227	ENST00000600026		M0R143	59 aa		13.71	□□□□□ -0.21
LTBP4-227	ENST00000600026	IGKV2D-28	P01615	120 aa		13.71	□□□□□ -0.21
LTBP4-227	ENST00000600026	FXYD2	P54710	66 aa		13.71	□□□□□ -0.21
LTBP4-227	ENST00000600026	UBE2B	P63146	152 aa		13.71	□□□□□ -0.21
LTBP4-227	ENST00000600026	S100A7L2	Q5SY68	101 aa		13.71	□□□□□ -0.21
LTBP4-227	ENST00000600026	OR13C6P	Q8NH95	151 aa		13.7	□□□□□ -0.22
LTBP4-227	ENST00000600026	TRAV13-2	A0A0B4J235	113 aa		13.69	□□□□□ -0.22
LTBP4-227	ENST00000600026	HINT1	P49773	126 aa	Predicted RBP	13.68	□□□□□ -0.22
LTBP4-227	ENST00000600026		A6NDN8	102 aa		13.67	□□□□□ -0.22
LTBP4-227	ENST00000600026	RPL37A	P61513	92 aa	Known RBP	13.67	□□□□□ -0.22
LTBP4-227	ENST00000600026	BVES-AS1	Q5T3Y7	98 aa		13.67	□□□□□ -0.22
LTBP4-227	ENST00000600026	LINC00337	Q8N6G1	96 aa		13.67	□□□□□ -0.22
LTBP4-227	ENST00000600026	RAB37	Q96AX2	223 aa		13.67	□□□□□ -0.22
LTBP4-227	ENST00000600026	TMEM126A	Q9H061	195 aa		13.67	□□□□□ -0.22
LTBP4-227	ENST00000600026	TRBV10-3	A0A0K0K1G6	114 aa		13.66	□□□□□ -0.22
LTBP4-227	ENST00000600026	RPL37AP8	A6NKH3	93 aa		13.66	□□□□□ -0.22
LTBP4-227	ENST00000600026	PLA2G1B	P04054	148 aa	Known RBP	13.66	□□□□□ -0.22
LTBP4-227	ENST00000600026	CBY1	Q9Y3M2	126 aa		13.66	□□□□□ -0.22
LTBP4-227	ENST00000600026	IGLV1-50	A0A075B6I6	118 aa		13.65	□□□□□ -0.22
LTBP4-227	ENST00000600026		A0A0B4J2C4	111 aa		13.65	□□□□□ -0.22
LTBP4-227	ENST00000600026	PCP4L1	A6NKN8	68 aa		13.65	□□□□□ -0.22
LTBP4-227	ENST00000600026	CFC1B	P0CG36	223 aa		13.65	□□□□□ -0.22
LTBP4-227	ENST00000600026	CFC1	P0CG37	223 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms