RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 HIST3H2BBQ8N257 126 aa11.92□□□□□ -0.5
SHKBP1-221ENST00000599833 PLEKHB2Q96CS7 222 aa11.92□□□□□ -0.5
SHKBP1-221ENST00000599833 E9PLD3 99 aa11.91□□□□□ -0.5
SHKBP1-221ENST00000599833 OXTP01178 125 aa11.91□□□□□ -0.5
SHKBP1-221ENST00000599833 HERV-K104P63124 156 aa11.91□□□□□ -0.5
SHKBP1-221ENST00000599833 C1orf137Q5JT78 98 aa11.91□□□□□ -0.5
SHKBP1-221ENST00000599833 MRPL55Q7Z7F7 128 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-221ENST00000599833 MT1HL1P0DM35 61 aa11.9□□□□□ -0.5
SHKBP1-221ENST00000599833 SPINK6Q6UWN8 80 aa11.9□□□□□ -0.5
SHKBP1-221ENST00000599833 LINC00167Q96N53 147 aa11.9□□□□□ -0.5
SHKBP1-221ENST00000599833 HMCN2Q8NDA2 5059 aa11.9□□□□□ -0.5
SHKBP1-221ENST00000599833 A0A0U1RRA0 63 aa11.89□□□□□ -0.51
SHKBP1-221ENST00000599833 MYMXA0A1B0GTQ4 84 aa11.89□□□□□ -0.51
SHKBP1-221ENST00000599833 IGLV7-43P04211 117 aa11.89□□□□□ -0.51
SHKBP1-221ENST00000599833 LINC00158P58513 81 aa11.88□□□□□ -0.51
SHKBP1-221ENST00000599833 KRTDAPP60985 99 aa11.88□□□□□ -0.51
SHKBP1-221ENST00000599833 HERVK_113P61574 105 aa11.88□□□□□ -0.51
SHKBP1-221ENST00000599833 UBE2BP63146 152 aa11.88□□□□□ -0.51
SHKBP1-221ENST00000599833 LBHQ53QV2 105 aaPredicted RBP11.87□□□□□ -0.51
SHKBP1-221ENST00000599833 HIST1H2BLQ99880 126 aa11.87□□□□□ -0.51
SHKBP1-221ENST00000599833 IGKV2D-26A0A0A0MRZ7 120 aa11.86□□□□□ -0.51
SHKBP1-221ENST00000599833 NMUP48645 174 aa11.86□□□□□ -0.51
SHKBP1-221ENST00000599833 MIR7-3HGQ8N6C7 128 aa11.86□□□□□ -0.51
SHKBP1-221ENST00000599833 GAGE10A6NGK3 116 aa11.84□□□□□ -0.51
SHKBP1-221ENST00000599833 MEIG1Q5JSS6 88 aa11.84□□□□□ -0.51
SHKBP1-221ENST00000599833 LOC107984156A0A0G2JMH3 177 aa11.83□□□□□ -0.52
SHKBP1-221ENST00000599833 RPL37AP8A6NKH3 93 aa11.83□□□□□ -0.52
SHKBP1-221ENST00000599833 ARL17AQ8IVW1 177 aa11.83□□□□□ -0.52
SHKBP1-221ENST00000599833 A0A0J9YXY3 114 aa11.82□□□□□ -0.52
SHKBP1-221ENST00000599833 LGALS3P17931 250 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-221ENST00000599833 DAND5Q8N907 189 aa11.82□□□□□ -0.52
SHKBP1-221ENST00000599833 IGLV1-50A0A075B6I6 118 aa11.81□□□□□ -0.52
SHKBP1-221ENST00000599833 NKAPP1Q8N9T2 125 aa11.81□□□□□ -0.52
SHKBP1-221ENST00000599833 LINC01600Q96MT4 127 aa11.81□□□□□ -0.52
SHKBP1-221ENST00000599833 TTTY13Q9BZ97 58 aa11.81□□□□□ -0.52
SHKBP1-221ENST00000599833 C5orf52A6NGY3 159 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 LINC00587B1AMM8 73 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 J3QL48 77 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 EIF4EBP3O60516 100 aaPredicted RBP11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 RPL24P83731 157 aaKnown RBP11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 ANKRD39Q53RE8 183 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 ADAMTSL4-AS1Q5T5F5 129 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 KRTAP13-1Q8IUC0 172 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 LITAFQ99732 161 aa11.8□□□□□ -0.52
SHKBP1-221ENST00000599833 SNRPEP62304 92 aaKnown RBP11.79□□□□□ -0.52
SHKBP1-221ENST00000599833 IGKV2-28A0A075B6P5 120 aa11.78□□□□□ -0.52
SHKBP1-221ENST00000599833 H0Y9J4 135 aa11.78□□□□□ -0.52
SHKBP1-221ENST00000599833 BCE1O60756 84 aa11.78□□□□□ -0.52
SHKBP1-221ENST00000599833 IGKV2D-28P01615 120 aa11.78□□□□□ -0.52
SHKBP1-221ENST00000599833 SOSTDC1Q6X4U4 206 aa11.78□□□□□ -0.52
SHKBP1-221ENST00000599833 ATOH7Q8N100 152 aa11.78□□□□□ -0.52
SHKBP1-221ENST00000599833 C20orf202A1L168 122 aa11.76□□□□□ -0.53
SHKBP1-221ENST00000599833 ZNF861PO60384 105 aa11.76□□□□□ -0.53
SHKBP1-221ENST00000599833 S100A6P06703 90 aa11.76□□□□□ -0.53
SHKBP1-221ENST00000599833 KRTAP1-4P0C5Y4 121 aa11.76□□□□□ -0.53
SHKBP1-221ENST00000599833 KRTAP10-8P60410 259 aa11.76□□□□□ -0.53
SHKBP1-221ENST00000599833 BOD1L2Q8IYS8 172 aa11.76□□□□□ -0.53
SHKBP1-221ENST00000599833 M0R378 163 aa11.75□□□□□ -0.53
SHKBP1-221ENST00000599833 DIRC1Q969H9 104 aa11.75□□□□□ -0.53
SHKBP1-221ENST00000599833 TMEM238C9JI98 176 aa11.74□□□□□ -0.53
SHKBP1-221ENST00000599833 S100A2P29034 98 aa11.74□□□□□ -0.53
SHKBP1-221ENST00000599833 REG3GQ6UW15 175 aa11.74□□□□□ -0.53
SHKBP1-221ENST00000599833 TMEM126AQ9H061 195 aa11.73□□□□□ -0.53
SHKBP1-221ENST00000599833 ZNF815PA8K554 130 aa11.72□□□□□ -0.53
SHKBP1-221ENST00000599833 NCR3O14931 201 aa11.72□□□□□ -0.53
SHKBP1-221ENST00000599833 TIMM17BO60830 172 aa11.72□□□□□ -0.53
SHKBP1-221ENST00000599833 NDUFC2O95298 119 aa11.69□□□□□ -0.54
SHKBP1-221ENST00000599833 AKR1D1P51857 326 aa11.69□□□□□ -0.54
SHKBP1-221ENST00000599833 PCP2Q8IVA1 136 aa11.69□□□□□ -0.54
SHKBP1-221ENST00000599833 SPRR1AP35321 89 aa11.68□□□□□ -0.54
SHKBP1-221ENST00000599833 TRBV10-2A0A0K0K1G8 114 aa11.67□□□□□ -0.54
SHKBP1-221ENST00000599833 KRTAP4-16G5E9R7 235 aaPredicted RBP11.67□□□□□ -0.54
SHKBP1-221ENST00000599833 NPC2P61916 151 aa11.67□□□□□ -0.54
SHKBP1-221ENST00000599833 LINC00308Q8TCZ7 52 aa11.67□□□□□ -0.54
SHKBP1-221ENST00000599833 KCNQ1DNQ9H478 68 aa11.67□□□□□ -0.54
SHKBP1-221ENST00000599833 TRBV10-3A0A0K0K1G6 114 aa11.66□□□□□ -0.54
SHKBP1-221ENST00000599833 RPL28P46779 137 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-221ENST00000599833 PRLHP81277 87 aa11.65□□□□□ -0.54
SHKBP1-221ENST00000599833 SPANXB1Q9NS25 103 aaPredicted RBP11.65□□□□□ -0.54
SHKBP1-221ENST00000599833 PRYO14603 147 aa11.64□□□□□ -0.55
SHKBP1-221ENST00000599833 IGLV6-57P01721 117 aa11.63□□□□□ -0.55
SHKBP1-221ENST00000599833 PRR26Q8N8Z3 221 aa11.63□□□□□ -0.55
SHKBP1-221ENST00000599833 SPANXDQ9BXN6 97 aa11.63□□□□□ -0.55
SHKBP1-221ENST00000599833 SPANXCQ9NY87 97 aa11.63□□□□□ -0.55
SHKBP1-221ENST00000599833 UBE2AP49459 152 aa11.62□□□□□ -0.55
SHKBP1-221ENST00000599833 FAM19A1Q7Z5A9 133 aa11.62□□□□□ -0.55
SHKBP1-221ENST00000599833 LINC00337Q8N6G1 96 aa11.61□□□□□ -0.55
SHKBP1-221ENST00000599833 MIEN1Q9BRT3 115 aa11.61□□□□□ -0.55
SHKBP1-221ENST00000599833 DDTP30046 118 aa11.59□□□□□ -0.55
SHKBP1-221ENST00000599833 PPDPFQ9H3Y8 114 aa11.58□□□□□ -0.56
SHKBP1-221ENST00000599833 A0A087X002 238 aa11.57□□□□□ -0.56
SHKBP1-221ENST00000599833 SCGB1D1O95968 90 aa11.57□□□□□ -0.56
SHKBP1-221ENST00000599833 SCGB1D4Q6XE38 83 aa11.57□□□□□ -0.56
SHKBP1-221ENST00000599833 ANAPC11Q9NYG5 84 aa11.55□□□□□ -0.56
SHKBP1-221ENST00000599833 B5MCH6 92 aa11.54□□□□□ -0.56
SHKBP1-221ENST00000599833 SMCR5Q8TEV8 140 aa11.54□□□□□ -0.56
SHKBP1-221ENST00000599833 Q6ZVH6 145 aa11.53□□□□□ -0.56
SHKBP1-221ENST00000599833 LRP2P98164 4655 aa11.53□□□□□ -0.56
SHKBP1-221ENST00000599833 HSBP1L1C9JCN9 74 aa11.52□□□□□ -0.57
SHKBP1-221ENST00000599833 IFITM1P13164 125 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms