RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SFTA2Q6UW10 78 aa8.72□□□□□ -1.01
SHKBP1-217ENST00000598558 IGLV5-37A0A075B6J1 123 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 IGKV2D-26A0A0A0MRZ7 120 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 MYMXA0A1B0GTQ4 84 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 VPREB1P12018 145 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 HERVK_113P61574 105 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 HERV-K104P63124 156 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 C1orf137Q5JT78 98 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 LINC00167Q96N53 147 aa8.71□□□□□ -1.02
SHKBP1-217ENST00000598558 GAGE10A6NGK3 116 aa8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 UBE2BP63146 152 aa8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 MRPL55Q7Z7F7 128 aaKnown RBP8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 ATOH7Q8N100 152 aa8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 MIR7-3HGQ8N6C7 128 aa8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 TTTY13Q9BZ97 58 aa8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 TP73-AS1Q9UF72 201 aa8.7□□□□□ -1.02
SHKBP1-217ENST00000598558 C5orf52A6NGY3 159 aa8.69□□□□□ -1.02
SHKBP1-217ENST00000598558 LGALS3P17931 250 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-217ENST00000598558 MEIG1Q5JSS6 88 aa8.69□□□□□ -1.02
SHKBP1-217ENST00000598558 RPL37AP8A6NKH3 93 aa8.68□□□□□ -1.02
SHKBP1-217ENST00000598558 KRTAP29-1A8MX34 341 aaPredicted RBP8.68□□□□□ -1.02
SHKBP1-217ENST00000598558 S100A6P06703 90 aa8.68□□□□□ -1.02
SHKBP1-217ENST00000598558 ANKRD39Q53RE8 183 aa8.68□□□□□ -1.02
SHKBP1-217ENST00000598558 DAND5Q8N907 189 aa8.68□□□□□ -1.02
SHKBP1-217ENST00000598558 A0A0J9YXY3 114 aa8.67□□□□□ -1.02
SHKBP1-217ENST00000598558 IGLV7-43P04211 117 aa8.67□□□□□ -1.02
SHKBP1-217ENST00000598558 S100A2P29034 98 aa8.67□□□□□ -1.02
SHKBP1-217ENST00000598558 NMUP48645 174 aa8.67□□□□□ -1.02
SHKBP1-217ENST00000598558 LBHQ53QV2 105 aaPredicted RBP8.67□□□□□ -1.02
SHKBP1-217ENST00000598558 ADAMTSL4-AS1Q5T5F5 129 aa8.67□□□□□ -1.02
SHKBP1-217ENST00000598558 EIF4EBP3O60516 100 aaPredicted RBP8.66□□□□□ -1.02
SHKBP1-217ENST00000598558 SPINK6Q6UWN8 80 aa8.65□□□□□ -1.02
SHKBP1-217ENST00000598558 NKAPP1Q8N9T2 125 aa8.65□□□□□ -1.02
SHKBP1-217ENST00000598558 C20orf202A1L168 122 aa8.64□□□□□ -1.03
SHKBP1-217ENST00000598558 LITAFQ99732 161 aa8.64□□□□□ -1.03
SHKBP1-217ENST00000598558 IGLV1-50A0A075B6I6 118 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 IGKV2-28A0A075B6P5 120 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 LINC00587B1AMM8 73 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 OXTP01178 125 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 IGKV2D-28P01615 120 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 MT1HL1P0DM35 61 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 RPL24P83731 157 aaKnown RBP8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 SOSTDC1Q6X4U4 206 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 BOD1L2Q8IYS8 172 aa8.63□□□□□ -1.03
SHKBP1-217ENST00000598558 LOC107984156A0A0G2JMH3 177 aa8.62□□□□□ -1.03
SHKBP1-217ENST00000598558 ARL17AQ8IVW1 177 aa8.62□□□□□ -1.03
SHKBP1-217ENST00000598558 HERC1Q15751 4861 aa8.62□□□□□ -1.03
SHKBP1-217ENST00000598558 ZNF815PA8K554 130 aa8.61□□□□□ -1.03
SHKBP1-217ENST00000598558 TMEM238C9JI98 176 aa8.6□□□□□ -1.03
SHKBP1-217ENST00000598558 J3QL48 77 aa8.6□□□□□ -1.03
SHKBP1-217ENST00000598558 NPC2P61916 151 aa8.6□□□□□ -1.03
SHKBP1-217ENST00000598558 PCP2Q8IVA1 136 aa8.6□□□□□ -1.03
SHKBP1-217ENST00000598558 M0R378 163 aa8.59□□□□□ -1.03
SHKBP1-217ENST00000598558 NCR3O14931 201 aa8.59□□□□□ -1.03
SHKBP1-217ENST00000598558 BCE1O60756 84 aa8.59□□□□□ -1.03
SHKBP1-217ENST00000598558 ZNF861PO60384 105 aa8.58□□□□□ -1.04
SHKBP1-217ENST00000598558 KRTAP13-1Q8IUC0 172 aa8.58□□□□□ -1.04
SHKBP1-217ENST00000598558 LINC01600Q96MT4 127 aa8.58□□□□□ -1.04
SHKBP1-217ENST00000598558 H0Y9J4 135 aa8.57□□□□□ -1.04
SHKBP1-217ENST00000598558 TIMM17BO60830 172 aa8.57□□□□□ -1.04
SHKBP1-217ENST00000598558 KRTAP10-8P60410 259 aa8.56□□□□□ -1.04
SHKBP1-217ENST00000598558 DIRC1Q969H9 104 aa8.56□□□□□ -1.04
SHKBP1-217ENST00000598558 TMEM126AQ9H061 195 aa8.56□□□□□ -1.04
SHKBP1-217ENST00000598558 DMBT1Q9UGM3 2413 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-217ENST00000598558 SCGB1D1O95968 90 aa8.55□□□□□ -1.04
SHKBP1-217ENST00000598558 KRTAP1-4P0C5Y4 121 aa8.55□□□□□ -1.04
SHKBP1-217ENST00000598558 REG3GQ6UW15 175 aa8.55□□□□□ -1.04
SHKBP1-217ENST00000598558 LINC00308Q8TCZ7 52 aa8.55□□□□□ -1.04
SHKBP1-217ENST00000598558 TNXBP22105 4242 aa8.55□□□□□ -1.04
SHKBP1-217ENST00000598558 TRBV10-3A0A0K0K1G6 114 aa8.54□□□□□ -1.04
SHKBP1-217ENST00000598558 AKR1D1P51857 326 aa8.54□□□□□ -1.04
SHKBP1-217ENST00000598558 NDUFC2O95298 119 aa8.52□□□□□ -1.05
SHKBP1-217ENST00000598558 PRLHP81277 87 aa8.52□□□□□ -1.05
SHKBP1-217ENST00000598558 KCNQ1DNQ9H478 68 aa8.52□□□□□ -1.05
SHKBP1-217ENST00000598558 TMA7Q9Y2S6 64 aaKnown RBP8.52□□□□□ -1.05
SHKBP1-217ENST00000598558 TRBV10-2A0A0K0K1G8 114 aa8.51□□□□□ -1.05
SHKBP1-217ENST00000598558 KRTAP4-16G5E9R7 235 aaPredicted RBP8.51□□□□□ -1.05
SHKBP1-217ENST00000598558 RPL28P46779 137 aaKnown RBP8.51□□□□□ -1.05
SHKBP1-217ENST00000598558 SCGB1D4Q6XE38 83 aa8.51□□□□□ -1.05
SHKBP1-217ENST00000598558 FAM19A1Q7Z5A9 133 aa8.51□□□□□ -1.05
SHKBP1-217ENST00000598558 MIEN1Q9BRT3 115 aa8.51□□□□□ -1.05
SHKBP1-217ENST00000598558 SPRR1AP35321 89 aa8.5□□□□□ -1.05
SHKBP1-217ENST00000598558 UBE2AP49459 152 aa8.5□□□□□ -1.05
SHKBP1-217ENST00000598558 PRR26Q8N8Z3 221 aa8.5□□□□□ -1.05
SHKBP1-217ENST00000598558 SPANXDQ9BXN6 97 aa8.5□□□□□ -1.05
SHKBP1-217ENST00000598558 SPANXB1Q9NS25 103 aaPredicted RBP8.5□□□□□ -1.05
SHKBP1-217ENST00000598558 SPANXCQ9NY87 97 aa8.5□□□□□ -1.05
SHKBP1-217ENST00000598558 PRYO14603 147 aa8.49□□□□□ -1.05
SHKBP1-217ENST00000598558 IGLV6-57P01721 117 aa8.49□□□□□ -1.05
SHKBP1-217ENST00000598558 DDTP30046 118 aa8.49□□□□□ -1.05
SHKBP1-217ENST00000598558 JOSD1Q15040 202 aaPredicted RBP8.48□□□□□ -1.05
SHKBP1-217ENST00000598558 MUSTN1Q8IVN3 82 aa8.48□□□□□ -1.05
SHKBP1-217ENST00000598558 ANAPC11Q9NYG5 84 aa8.48□□□□□ -1.05
SHKBP1-217ENST00000598558 HSBP1L1C9JCN9 74 aa8.47□□□□□ -1.05
SHKBP1-217ENST00000598558 LINC00337Q8N6G1 96 aa8.46□□□□□ -1.06
SHKBP1-217ENST00000598558 B5MCH6 92 aa8.44□□□□□ -1.06
SHKBP1-217ENST00000598558 COX8AP10176 69 aa8.44□□□□□ -1.06
SHKBP1-217ENST00000598558 IFITM1P13164 125 aa8.44□□□□□ -1.06
SHKBP1-217ENST00000598558 PYY3Q5JQD4 70 aa8.44□□□□□ -1.06
SHKBP1-217ENST00000598558 S100A7L2Q5SY68 101 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms