RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 LEPROTO15243 131 aa8.45□□□□□ -1.06
UPF1-205ENST00000598209 ATP6V1G1O75348 118 aa8.45□□□□□ -1.06
UPF1-205ENST00000598209 HERVK_113P61574 105 aa8.45□□□□□ -1.06
UPF1-205ENST00000598209 HERV-K104P63124 156 aa8.45□□□□□ -1.06
UPF1-205ENST00000598209 COA6Q5JTJ3 125 aaKnown RBP8.45□□□□□ -1.06
UPF1-205ENST00000598209 LINC01600Q96MT4 127 aa8.45□□□□□ -1.06
UPF1-205ENST00000598209 LINC00167Q96N53 147 aa8.45□□□□□ -1.06
UPF1-205ENST00000598209 GAGE10A6NGK3 116 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 RPL37AP8A6NKH3 93 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 SYS1-DBNDD2H3BUS1 97 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 TSPEAR-AS2P59090 65 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 MEIG1Q5JSS6 88 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 DIRC1Q969H9 104 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 PLEKHB2Q96CS7 222 aa8.44□□□□□ -1.06
UPF1-205ENST00000598209 MYMXA0A1B0GTQ4 84 aa8.43□□□□□ -1.06
UPF1-205ENST00000598209 SMIM13P0DJ93 91 aa8.43□□□□□ -1.06
UPF1-205ENST00000598209 VPREB1P12018 145 aa8.43□□□□□ -1.06
UPF1-205ENST00000598209 J3QQQ9 107 aa8.42□□□□□ -1.06
UPF1-205ENST00000598209 RPL24P83731 157 aaKnown RBP8.42□□□□□ -1.06
UPF1-205ENST00000598209 H0Y9J4 135 aa8.41□□□□□ -1.06
UPF1-205ENST00000598209 PET117Q6UWS5 81 aa8.41□□□□□ -1.06
UPF1-205ENST00000598209 Q8NDZ9 215 aa8.41□□□□□ -1.06
UPF1-205ENST00000598209 LINC00587B1AMM8 73 aa8.4□□□□□ -1.06
UPF1-205ENST00000598209 LGALS3P17931 250 aaKnown RBP8.4□□□□□ -1.06
UPF1-205ENST00000598209 LINC01545Q5VT33 79 aa8.4□□□□□ -1.06
UPF1-205ENST00000598209 MIR7-3HGQ8N6C7 128 aa8.4□□□□□ -1.06
UPF1-205ENST00000598209 TNXBP22105 4242 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 IGKV2-28A0A075B6P5 120 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 ZNF861PO60384 105 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 BCE1O60756 84 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 IGKV2D-28P01615 120 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 C3orf79P0CE67 100 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 NMUP48645 174 aa8.39□□□□□ -1.07
UPF1-205ENST00000598209 E9PLD3 99 aa8.38□□□□□ -1.07
UPF1-205ENST00000598209 KRTDAPP60985 99 aa8.38□□□□□ -1.07
UPF1-205ENST00000598209 IGLV1-50A0A075B6I6 118 aa8.37□□□□□ -1.07
UPF1-205ENST00000598209 KRTAP10-8P60410 259 aa8.37□□□□□ -1.07
UPF1-205ENST00000598209 RPL28P46779 137 aaKnown RBP8.36□□□□□ -1.07
UPF1-205ENST00000598209 BOD1L2Q8IYS8 172 aa8.36□□□□□ -1.07
UPF1-205ENST00000598209 DAND5Q8N907 189 aa8.35□□□□□ -1.07
UPF1-205ENST00000598209 M0R378 163 aa8.34□□□□□ -1.07
UPF1-205ENST00000598209 KRTAP1-4P0C5Y4 121 aa8.34□□□□□ -1.07
UPF1-205ENST00000598209 UBE2AP49459 152 aa8.34□□□□□ -1.07
UPF1-205ENST00000598209 C20orf202A1L168 122 aa8.33□□□□□ -1.08
UPF1-205ENST00000598209 TMEM238C9JI98 176 aa8.33□□□□□ -1.08
UPF1-205ENST00000598209 NCR3O14931 201 aa8.33□□□□□ -1.08
UPF1-205ENST00000598209 TMEM126AQ9H061 195 aa8.33□□□□□ -1.08
UPF1-205ENST00000598209 LOC107984156A0A0G2JMH3 177 aa8.32□□□□□ -1.08
UPF1-205ENST00000598209 A0A0J9YXY3 114 aa8.32□□□□□ -1.08
UPF1-205ENST00000598209 KRTAP13-1Q8IUC0 172 aa8.32□□□□□ -1.08
UPF1-205ENST00000598209 ARL17AQ8IVW1 177 aa8.32□□□□□ -1.08
UPF1-205ENST00000598209 PRR26Q8N8Z3 221 aa8.32□□□□□ -1.08
UPF1-205ENST00000598209 IGKV2D-26A0A0A0MRZ7 120 aa8.31□□□□□ -1.08
UPF1-205ENST00000598209 FAM19A1Q7Z5A9 133 aa8.31□□□□□ -1.08
UPF1-205ENST00000598209 PRLHP81277 87 aa8.3□□□□□ -1.08
UPF1-205ENST00000598209 HIST3H2BBQ8N257 126 aa8.3□□□□□ -1.08
UPF1-205ENST00000598209 MIEN1Q9BRT3 115 aa8.3□□□□□ -1.08
UPF1-205ENST00000598209 ZNF815PA8K554 130 aa8.29□□□□□ -1.08
UPF1-205ENST00000598209 S100A2P29034 98 aa8.29□□□□□ -1.08
UPF1-205ENST00000598209 ADAMTSL4-AS1Q5T5F5 129 aa8.29□□□□□ -1.08
UPF1-205ENST00000598209 PRYO14603 147 aa8.28□□□□□ -1.08
UPF1-205ENST00000598209 S100A6P06703 90 aa8.28□□□□□ -1.08
UPF1-205ENST00000598209 NPC2P61916 151 aa8.28□□□□□ -1.08
UPF1-205ENST00000598209 ATOH7Q8N100 152 aa8.28□□□□□ -1.08
UPF1-205ENST00000598209 HIST1H2BLQ99880 126 aa8.28□□□□□ -1.08
UPF1-205ENST00000598209 TTTY13Q9BZ97 58 aa8.28□□□□□ -1.08
UPF1-205ENST00000598209 TRBV10-3A0A0K0K1G6 114 aa8.27□□□□□ -1.09
UPF1-205ENST00000598209 AKR1D1P51857 326 aa8.27□□□□□ -1.09
UPF1-205ENST00000598209 SOSTDC1Q6X4U4 206 aa8.27□□□□□ -1.09
UPF1-205ENST00000598209 TRBV10-2A0A0K0K1G8 114 aa8.26□□□□□ -1.09
UPF1-205ENST00000598209 EIF4EBP3O60516 100 aaPredicted RBP8.26□□□□□ -1.09
UPF1-205ENST00000598209 TIMM17BO60830 172 aa8.26□□□□□ -1.09
UPF1-205ENST00000598209 ANKRD39Q53RE8 183 aa8.26□□□□□ -1.09
UPF1-205ENST00000598209 LITAFQ99732 161 aa8.26□□□□□ -1.09
UPF1-205ENST00000598209 KCNQ1DNQ9H478 68 aa8.26□□□□□ -1.09
UPF1-205ENST00000598209 SPANXB1Q9NS25 103 aaPredicted RBP8.26□□□□□ -1.09
UPF1-205ENST00000598209 NDUFC2O95298 119 aa8.25□□□□□ -1.09
UPF1-205ENST00000598209 RPL13AP40429 203 aaKnown RBP8.25□□□□□ -1.09
UPF1-205ENST00000598209 DDTP30046 118 aa8.24□□□□□ -1.09
UPF1-205ENST00000598209 SPRR1AP35321 89 aa8.24□□□□□ -1.09
UPF1-205ENST00000598209 SNRPEP62304 92 aaKnown RBP8.23□□□□□ -1.09
UPF1-205ENST00000598209 S100A12P80511 92 aa8.23□□□□□ -1.09
UPF1-205ENST00000598209 LINC00337Q8N6G1 96 aa8.23□□□□□ -1.09
UPF1-205ENST00000598209 LINC00308Q8TCZ7 52 aa8.23□□□□□ -1.09
UPF1-205ENST00000598209 HIGD2AQ9BW72 106 aa8.23□□□□□ -1.09
UPF1-205ENST00000598209 HMCN2Q8NDA2 5059 aa8.23□□□□□ -1.09
UPF1-205ENST00000598209 A0A087X002 238 aa8.22□□□□□ -1.09
UPF1-205ENST00000598209 ETDCA0A1B0GVM5 59 aa8.22□□□□□ -1.09
UPF1-205ENST00000598209 S100A7L2Q5SY68 101 aa8.22□□□□□ -1.09
UPF1-205ENST00000598209 ANAPC11Q9NYG5 84 aa8.22□□□□□ -1.09
UPF1-205ENST00000598209 KRTAP4-16G5E9R7 235 aaPredicted RBP8.21□□□□□ -1.1
UPF1-205ENST00000598209 CRYGAP11844 174 aa8.21□□□□□ -1.1
UPF1-205ENST00000598209 SCGB1D4Q6XE38 83 aa8.21□□□□□ -1.1
UPF1-205ENST00000598209 IGLV6-57P01721 117 aa8.2□□□□□ -1.1
UPF1-205ENST00000598209 PCP2Q8IVA1 136 aa8.2□□□□□ -1.1
UPF1-205ENST00000598209 C5orf52A6NGY3 159 aa8.19□□□□□ -1.1
UPF1-205ENST00000598209 FAM229BQ4G0N7 80 aa8.19□□□□□ -1.1
UPF1-205ENST00000598209 SPANXCQ9NY87 97 aa8.19□□□□□ -1.1
UPF1-205ENST00000598209 TYMSOSQ8TAI1 123 aa8.18□□□□□ -1.1
UPF1-205ENST00000598209 SPANXDQ9BXN6 97 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms