RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SDIM1Q6ZPB5 146 aa9.82□□□□□ -0.84
TRIM28-209ENST00000597423 SNHG12Q9BXW3 62 aa9.82□□□□□ -0.84
TRIM28-209ENST00000597423 NHP2Q9NX24 153 aaKnown RBP9.82□□□□□ -0.84
TRIM28-209ENST00000597423 TRAV13-2A0A0B4J235 113 aa9.81□□□□□ -0.84
TRIM28-209ENST00000597423 COL5A1-AS1Q5SY13 56 aa9.81□□□□□ -0.84
TRIM28-209ENST00000597423 DPH3Q96FX2 82 aa9.81□□□□□ -0.84
TRIM28-209ENST00000597423 A0A0B4J2C4 111 aa9.8□□□□□ -0.84
TRIM28-209ENST00000597423 EIF4EBP3O60516 100 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-209ENST00000597423 CFC1BP0CG36 223 aa9.8□□□□□ -0.84
TRIM28-209ENST00000597423 CFC1P0CG37 223 aa9.8□□□□□ -0.84
TRIM28-209ENST00000597423 PLA2G2DQ9UNK4 145 aa9.8□□□□□ -0.84
TRIM28-209ENST00000597423 A0A1B0GWB2 263 aa9.79□□□□□ -0.84
TRIM28-209ENST00000597423 LBHQ53QV2 105 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-209ENST00000597423 PRO1854Q9UHT4 67 aa9.79□□□□□ -0.84
TRIM28-209ENST00000597423 IGKV2-24A0A0C4DH68 120 aa9.78□□□□□ -0.84
TRIM28-209ENST00000597423 TRBV10-2A0A0K0K1G8 114 aa9.78□□□□□ -0.84
TRIM28-209ENST00000597423 C9orf129Q5T035 196 aaKnown RBP9.78□□□□□ -0.84
TRIM28-209ENST00000597423 DNAH10Q8IVF4 4471 aa9.78□□□□□ -0.84
TRIM28-209ENST00000597423 A0A096LNI7 61 aa9.77□□□□□ -0.85
TRIM28-209ENST00000597423 NKAPP1Q8N9T2 125 aa9.77□□□□□ -0.85
TRIM28-209ENST00000597423 CBY1Q9Y3M2 126 aa9.77□□□□□ -0.85
TRIM28-209ENST00000597423 M0R378 163 aa9.76□□□□□ -0.85
TRIM28-209ENST00000597423 S100A7L2Q5SY68 101 aa9.76□□□□□ -0.85
TRIM28-209ENST00000597423 OR13C6PQ8NH95 151 aa9.76□□□□□ -0.85
TRIM28-209ENST00000597423 DNAH2Q9P225 4427 aa9.75□□□□□ -0.85
TRIM28-209ENST00000597423 VPREB1P12018 145 aa9.75□□□□□ -0.85
TRIM28-209ENST00000597423 LINC01620Q4KN68 170 aa9.75□□□□□ -0.85
TRIM28-209ENST00000597423 TMEM126AQ9H061 195 aa9.75□□□□□ -0.85
TRIM28-209ENST00000597423 IGLV5-37A0A075B6J1 123 aa9.74□□□□□ -0.85
TRIM28-209ENST00000597423 IGKV2-28A0A075B6P5 120 aa9.74□□□□□ -0.85
TRIM28-209ENST00000597423 IGKV2D-28P01615 120 aa9.74□□□□□ -0.85
TRIM28-209ENST00000597423 KRTAP10-2P60368 255 aa9.74□□□□□ -0.85
TRIM28-209ENST00000597423 PRR3P79522 188 aaKnown RBP9.74□□□□□ -0.85
TRIM28-209ENST00000597423 SACSQ9NZJ4 4579 aa9.74□□□□□ -0.85
TRIM28-209ENST00000597423 HYDINQ4G0P3 5121 aa9.73□□□□□ -0.85
TRIM28-209ENST00000597423 K7ERJ3 54 aa9.73□□□□□ -0.85
TRIM28-209ENST00000597423 NCR3O14931 201 aa9.73□□□□□ -0.85
TRIM28-209ENST00000597423 FUSP35637 526 aaKnown RBP eCLIP9.72□□□□□ -0.852e-6■■■■□ 19.4
TRIM28-209ENST00000597423 RPL13AP40429 203 aaKnown RBP9.72□□□□□ -0.85
TRIM28-209ENST00000597423 Q1RN00 199 aa9.72□□□□□ -0.85
TRIM28-209ENST00000597423 DNAH17Q9UFH2 4485 aa9.72□□□□□ -0.85
TRIM28-209ENST00000597423 CHTF8P0CG12 524 aa9.71□□□□□ -0.86
TRIM28-209ENST00000597423 SERTAD4-AS1Q5TG53 156 aa9.71□□□□□ -0.86
TRIM28-209ENST00000597423 FAM19A5Q7Z5A7 132 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-209ENST00000597423 LINC00337Q8N6G1 96 aa9.71□□□□□ -0.86
TRIM28-209ENST00000597423 C22orf24Q9Y442 160 aa9.71□□□□□ -0.86
TRIM28-209ENST00000597423 H7C2G1 150 aa9.7□□□□□ -0.86
TRIM28-209ENST00000597423 SPACA4Q8TDM5 124 aa9.7□□□□□ -0.86
TRIM28-209ENST00000597423 FAM168BA1KXE4 195 aa9.69□□□□□ -0.86
TRIM28-209ENST00000597423 PSMB2P49721 201 aa9.69□□□□□ -0.86
TRIM28-209ENST00000597423 MRPL55Q7Z7F7 128 aaKnown RBP9.69□□□□□ -0.86
TRIM28-209ENST00000597423 Q8NDZ9 215 aa9.69□□□□□ -0.86
TRIM28-209ENST00000597423 A0A1W2PNN7 141 aa9.68□□□□□ -0.86
TRIM28-209ENST00000597423 C9orf118A6NHY6 69 aa9.68□□□□□ -0.86
TRIM28-209ENST00000597423 TAX1BP3O14907 124 aa9.68□□□□□ -0.86
TRIM28-209ENST00000597423 IGLV6-57P01721 117 aa9.68□□□□□ -0.86
TRIM28-209ENST00000597423 COX6CP09669 75 aa9.68□□□□□ -0.86
TRIM28-209ENST00000597423 M0QXV9 152 aa9.67□□□□□ -0.86
TRIM28-209ENST00000597423 C7orf33Q8WU49 177 aa9.67□□□□□ -0.86
TRIM28-209ENST00000597423 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-209ENST00000597423 FRAS1Q86XX4 4008 aa9.67□□□□□ -0.86
TRIM28-209ENST00000597423 VAMP3Q15836 100 aa9.66□□□□□ -0.86
TRIM28-209ENST00000597423 LYRM7Q5U5X0 104 aa9.66□□□□□ -0.86
TRIM28-209ENST00000597423 LINC00167Q96N53 147 aa9.66□□□□□ -0.86
TRIM28-209ENST00000597423 RYR2Q92736 4967 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 A0A087WYN8 130 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 TRBV10-3A0A0K0K1G6 114 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 A0A1B0GVY2 172 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 GAGE10A6NGK3 116 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 TSPAN13O95857 204 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 SCGB1C2P0DMR2 95 aa9.65□□□□□ -0.86
TRIM28-209ENST00000597423 RPL28P46779 137 aaKnown RBP9.65□□□□□ -0.86
TRIM28-209ENST00000597423 EPM2AB3EWF7 344 aa9.64□□□□□ -0.87
TRIM28-209ENST00000597423 SMIM11BQ8TCY0 68 aa9.64□□□□□ -0.87
TRIM28-209ENST00000597423 PLAC8Q9NZF1 115 aa9.64□□□□□ -0.87
TRIM28-209ENST00000597423 IGLV1-50A0A075B6I6 118 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 TRAV23DV6A0A075B6W5 121 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 H3BUT2 72 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 PANO1I0J062 215 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 KRTAP10-1P60331 282 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 KRTAP7-1Q8IUC3 87 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 KCNQ1DNQ9H478 68 aa9.63□□□□□ -0.87
TRIM28-209ENST00000597423 KMT2CQ8NEZ4 4911 aaKnown RBP9.62□□□□□ -0.87
TRIM28-209ENST00000597423 FABP2P12104 132 aa9.62□□□□□ -0.87
TRIM28-209ENST00000597423 UBE2BP63146 152 aa9.62□□□□□ -0.87
TRIM28-209ENST00000597423 RPL37AP8A6NKH3 93 aa9.61□□□□□ -0.87
TRIM28-209ENST00000597423 H0YGX0 51 aa9.61□□□□□ -0.87
TRIM28-209ENST00000597423 PRYO14603 147 aa9.61□□□□□ -0.87
TRIM28-209ENST00000597423 HECTD4Q9Y4D8 3996 aa9.61□□□□□ -0.87
TRIM28-209ENST00000597423 A0A1W2PPM0 123 aa9.6□□□□□ -0.87
TRIM28-209ENST00000597423 ZNF73O43830 326 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-209ENST00000597423 SNCGO76070 127 aa9.6□□□□□ -0.87
TRIM28-209ENST00000597423 Q6ZSA8 131 aa9.6□□□□□ -0.87
TRIM28-209ENST00000597423 PHF5AQ7RTV0 110 aaKnown RBP9.6□□□□□ -0.87
TRIM28-209ENST00000597423 DIRC1Q969H9 104 aa9.6□□□□□ -0.87
TRIM28-209ENST00000597423 TRBV7-6A0A0J9YX20 115 aa9.59□□□□□ -0.87
TRIM28-209ENST00000597423 FAT2Q9NYQ8 4349 aa9.58□□□□□ -0.88
TRIM28-209ENST00000597423 TRIAP1O43715 76 aa9.58□□□□□ -0.88
TRIM28-209ENST00000597423 C6orf99Q4VX62 202 aa9.58□□□□□ -0.88
TRIM28-209ENST00000597423 NAA38Q9BRA0 125 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms