RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 KRTAP9-6A0A140TA67 174 aa7.78□□□□□ -1.16
SHKBP1-213ENST00000597325 TIMM17BO60830 172 aa7.78□□□□□ -1.16
SHKBP1-213ENST00000597325 SMIM13P0DJ93 91 aa7.78□□□□□ -1.16
SHKBP1-213ENST00000597325 RPL18AQ02543 176 aaKnown RBP7.78□□□□□ -1.16
SHKBP1-213ENST00000597325 TP73-AS1Q9UF72 201 aa7.78□□□□□ -1.16
SHKBP1-213ENST00000597325 A0A0U1RRA0 63 aa7.77□□□□□ -1.17
SHKBP1-213ENST00000597325 NDUFC2-KCTD14E9PQ53 114 aa7.76□□□□□ -1.17
SHKBP1-213ENST00000597325 GCSHP23434 173 aa7.76□□□□□ -1.17
SHKBP1-213ENST00000597325 FUSP35637 526 aaKnown RBP eCLIP7.76□□□□□ -1.17
SHKBP1-213ENST00000597325 C9orf163Q8N9P6 203 aa7.76□□□□□ -1.17
SHKBP1-213ENST00000597325 PGPEP1Q9NXJ5 209 aa7.76□□□□□ -1.17
SHKBP1-213ENST00000597325 TLX1NBP0CAT3 122 aa7.75□□□□□ -1.17
SHKBP1-213ENST00000597325 HNRNPA3P51991 378 aaKnown RBP7.75□□□□□ -1.17
SHKBP1-213ENST00000597325 KRTAP10-1P60331 282 aa7.75□□□□□ -1.17
SHKBP1-213ENST00000597325 MIEN1Q9BRT3 115 aa7.75□□□□□ -1.17
SHKBP1-213ENST00000597325 GAGE2BQ13066 116 aa7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 SRSF9Q13242 221 aaKnown RBP eCLIP7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 GAGE2EQ4V326 116 aa7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 MIR7-3HGQ8N6C7 128 aa7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 COPS9Q8WXC6 57 aa7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 HIGD1BQ9P298 99 aa7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 GAGE2DQ9UEU5 116 aa7.74□□□□□ -1.17
SHKBP1-213ENST00000597325 LINC01620Q4KN68 170 aa7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 DAND5Q8N907 189 aa7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 HIST1H4GQ99525 98 aa7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 LITAFQ99732 161 aa7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 SPANXDQ9BXN6 97 aa7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 SPANXB1Q9NS25 103 aaPredicted RBP7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 SPANXCQ9NY87 97 aa7.73□□□□□ -1.17
SHKBP1-213ENST00000597325 ADAMTSL4-AS1Q5T5F5 129 aa7.72□□□□□ -1.17
SHKBP1-213ENST00000597325 Q6ZRP5 223 aa7.72□□□□□ -1.17
SHKBP1-213ENST00000597325 C2orf91Q6ZV80 131 aa7.72□□□□□ -1.17
SHKBP1-213ENST00000597325 Q6ZVH6 145 aa7.72□□□□□ -1.17
SHKBP1-213ENST00000597325 SND1-IT1Q9HBX3 110 aa7.72□□□□□ -1.17
SHKBP1-213ENST00000597325 LINC00474Q9P2X8 69 aa7.72□□□□□ -1.17
SHKBP1-213ENST00000597325 A0A096LNI7 61 aa7.71□□□□□ -1.18
SHKBP1-213ENST00000597325 IGKV2-24A0A0C4DH68 120 aa7.71□□□□□ -1.18
SHKBP1-213ENST00000597325 PTTG1IPP53801 180 aa7.71□□□□□ -1.18
SHKBP1-213ENST00000597325 NPC2P61916 151 aa7.71□□□□□ -1.18
SHKBP1-213ENST00000597325 XAGE1AQ9HD64 81 aa7.71□□□□□ -1.18
SHKBP1-213ENST00000597325 IFITM1P13164 125 aa7.7□□□□□ -1.18
SHKBP1-213ENST00000597325 HAMPP81172 84 aa7.7□□□□□ -1.18
SHKBP1-213ENST00000597325 SDIM1Q6ZPB5 146 aa7.7□□□□□ -1.18
SHKBP1-213ENST00000597325 HSD52Q0P140 79 aa7.69□□□□□ -1.18
SHKBP1-213ENST00000597325 TAL2Q16559 108 aa7.69□□□□□ -1.18
SHKBP1-213ENST00000597325 LINC00308Q8TCZ7 52 aa7.69□□□□□ -1.18
SHKBP1-213ENST00000597325 DPH3Q96FX2 82 aa7.68□□□□□ -1.18
SHKBP1-213ENST00000597325 FAT4Q6V0I7 4981 aa7.67□□□□□ -1.18
SHKBP1-213ENST00000597325 OXTP01178 125 aa7.67□□□□□ -1.18
SHKBP1-213ENST00000597325 CHTF8P0CG12 524 aa7.67□□□□□ -1.18
SHKBP1-213ENST00000597325 DDTP30046 118 aa7.67□□□□□ -1.18
SHKBP1-213ENST00000597325 RPL24P83731 157 aaKnown RBP7.67□□□□□ -1.18
SHKBP1-213ENST00000597325 C9orf129Q5T035 196 aaKnown RBP7.67□□□□□ -1.18
SHKBP1-213ENST00000597325 SOSTDC1Q6X4U4 206 aa7.66□□□□□ -1.18
SHKBP1-213ENST00000597325 MUSTN1Q8IVN3 82 aa7.66□□□□□ -1.18
SHKBP1-213ENST00000597325 SPACA4Q8TDM5 124 aa7.66□□□□□ -1.18
SHKBP1-213ENST00000597325 PPDPFQ9H3Y8 114 aa7.66□□□□□ -1.18
SHKBP1-213ENST00000597325 LOC107984156A0A0G2JMH3 177 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 TMEM238LA0A1B0GVL6 79 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 A6NJY4 79 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 CTAG1AP78358 180 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 FAM19A5Q7Z5A7 132 aaPredicted RBP7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 ARL17AQ8IVW1 177 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 CEND1Q8N111 149 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 NKAPP1Q8N9T2 125 aa7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.65□□□□□ -1.18
SHKBP1-213ENST00000597325 M0R143 59 aa7.64□□□□□ -1.19
SHKBP1-213ENST00000597325 PCP4L1A6NKN8 68 aa7.63□□□□□ -1.19
SHKBP1-213ENST00000597325 EIF4EBP3O60516 100 aaPredicted RBP7.63□□□□□ -1.19
SHKBP1-213ENST00000597325 NDUFC2O95298 119 aa7.63□□□□□ -1.19
SHKBP1-213ENST00000597325 PLA2G1BP04054 148 aaKnown RBP7.63□□□□□ -1.19
SHKBP1-213ENST00000597325 FAM168BA1KXE4 195 aa7.62□□□□□ -1.19
SHKBP1-213ENST00000597325 A4D1N5 150 aa7.62□□□□□ -1.19
SHKBP1-213ENST00000597325 PANO1I0J062 215 aa7.62□□□□□ -1.19
SHKBP1-213ENST00000597325 NCR3O14931 201 aa7.62□□□□□ -1.19
SHKBP1-213ENST00000597325 VPREB1P12018 145 aa7.62□□□□□ -1.19
SHKBP1-213ENST00000597325 M0QXV9 152 aa7.61□□□□□ -1.19
SHKBP1-213ENST00000597325 IGLV5-37A0A075B6J1 123 aa7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 A0A087WYN8 130 aa7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 TRBV10-2A0A0K0K1G8 114 aa7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 A0A1W2PNN7 141 aa7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 HINT1P49773 126 aaPredicted RBP7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 FXYD2P54710 66 aa7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 Q6ZSA8 131 aa7.6□□□□□ -1.19
SHKBP1-213ENST00000597325 M0R378 163 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 BATFQ16520 125 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 LBHQ53QV2 105 aaPredicted RBP7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 S100A7L2Q5SY68 101 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 BVES-AS1Q5T3Y7 98 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 MRPL55Q7Z7F7 128 aaKnown RBP7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 Q8NDZ9 215 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 RAB37Q96AX2 223 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 FAM30AQ9NZY2 134 aa7.59□□□□□ -1.19
SHKBP1-213ENST00000597325 A6NDN8 102 aa7.58□□□□□ -1.2
SHKBP1-213ENST00000597325 KRTAP10-4P60372 401 aaPredicted RBP7.58□□□□□ -1.2
SHKBP1-213ENST00000597325 PRR3P79522 188 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-213ENST00000597325 SCXQ7RTU7 201 aa7.58□□□□□ -1.2
SHKBP1-213ENST00000597325 OR13C6PQ8NH95 151 aa7.58□□□□□ -1.2
SHKBP1-213ENST00000597325 NHP2Q9NX24 153 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-213ENST00000597325 PLAC8Q9NZF1 115 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms