RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 HAMPP81172 84 aa6.05□□□□□ -1.44
TRIM28-208ENST00000597172 LINC01620Q4KN68 170 aa6.05□□□□□ -1.44
TRIM28-208ENST00000597172 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.04□□□□□ -1.44
TRIM28-208ENST00000597172 PLA2G1BP04054 148 aaKnown RBP6.04□□□□□ -1.44
TRIM28-208ENST00000597172 TLX1NBP0CAT3 122 aa6.04□□□□□ -1.44
TRIM28-208ENST00000597172 COX17Q14061 63 aa6.04□□□□□ -1.44
TRIM28-208ENST00000597172 SCGB1D4Q6XE38 83 aa6.04□□□□□ -1.44
TRIM28-208ENST00000597172 SDIM1Q6ZPB5 146 aa6.04□□□□□ -1.44
TRIM28-208ENST00000597172 C2orf91Q6ZV80 131 aa6.04□□□□□ -1.44
TRIM28-208ENST00000597172 IGLV5-52A0A0A0MRZ9 124 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 TIMM17BO60830 172 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 LINC00158P58513 81 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 MEIG1Q5JSS6 88 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 Q6ZRP5 223 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 DAND5Q8N907 189 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 MIEN1Q9BRT3 115 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 UQCR10Q9UDW1 63 aa6.03□□□□□ -1.44
TRIM28-208ENST00000597172 LINC00587B1AMM8 73 aa6.02□□□□□ -1.45
TRIM28-208ENST00000597172 NDUFC2-KCTD14E9PQ53 114 aa6.02□□□□□ -1.45
TRIM28-208ENST00000597172 EIF4EBP3O60516 100 aaPredicted RBP6.02□□□□□ -1.45
TRIM28-208ENST00000597172 CIRBPQ14011 172 aaKnown RBP6.02□□□□□ -1.45
TRIM28-208ENST00000597172 HIGD1BQ9P298 99 aa6.02□□□□□ -1.45
TRIM28-208ENST00000597172 LOC107984640A0A0U1RRK4 108 aa6.01□□□□□ -1.45
TRIM28-208ENST00000597172 MIR7-3HGQ8N6C7 128 aa6.01□□□□□ -1.45
TRIM28-208ENST00000597172 SND1-IT1Q9HBX3 110 aa6.01□□□□□ -1.45
TRIM28-208ENST00000597172 A0A096LNI7 61 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 LOC107984156A0A0G2JMH3 177 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 PANO1I0J062 215 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 RPL18AQ02543 176 aaKnown RBP6□□□□□ -1.45
TRIM28-208ENST00000597172 GAGE2BQ13066 116 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 GAGE2EQ4V326 116 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 C9orf129Q5T035 196 aaKnown RBP6□□□□□ -1.45
TRIM28-208ENST00000597172 SOSTDC1Q6X4U4 206 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 ARL17AQ8IVW1 177 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 SPANXDQ9BXN6 97 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 SPANXB1Q9NS25 103 aaPredicted RBP6□□□□□ -1.45
TRIM28-208ENST00000597172 SPANXCQ9NY87 97 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 GAGE2DQ9UEU5 116 aa6□□□□□ -1.45
TRIM28-208ENST00000597172 TMEM238C9JI98 176 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 TSTD3H0UI37 97 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 GCSHP23434 173 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 PTTG1IPP53801 180 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 NPC2P61916 151 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 MUSTN1Q8IVN3 82 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 XAGE1AQ9HD64 81 aa5.99□□□□□ -1.45
TRIM28-208ENST00000597172 CHTF8P0CG12 524 aa5.98□□□□□ -1.45
TRIM28-208ENST00000597172 SRSF9Q13242 221 aaKnown RBP eCLIP5.98□□□□□ -1.45
TRIM28-208ENST00000597172 Q8NDZ9 215 aa5.98□□□□□ -1.45
TRIM28-208ENST00000597172 LINC00308Q8TCZ7 52 aa5.98□□□□□ -1.45
TRIM28-208ENST00000597172 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.98□□□□□ -1.45
TRIM28-208ENST00000597172 IGKV2-24A0A0C4DH68 120 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 A0A1W2PNN7 141 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 IFITM1P13164 125 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 HNRNPA3P51991 378 aaKnown RBP5.97□□□□□ -1.45
TRIM28-208ENST00000597172 Q6ZVH6 145 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 KRTAP7-1Q8IUC3 87 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 HIST1H4GQ99525 98 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 FAM30AQ9NZY2 134 aa5.97□□□□□ -1.45
TRIM28-208ENST00000597172 FAM168BA1KXE4 195 aa5.96□□□□□ -1.46
TRIM28-208ENST00000597172 CTAG1AP78358 180 aa5.96□□□□□ -1.46
TRIM28-208ENST00000597172 TAL2Q16559 108 aa5.96□□□□□ -1.46
TRIM28-208ENST00000597172 DDTP30046 118 aa5.95□□□□□ -1.46
TRIM28-208ENST00000597172 PRR3P79522 188 aaKnown RBP5.95□□□□□ -1.46
TRIM28-208ENST00000597172 CEND1Q8N111 149 aa5.95□□□□□ -1.46
TRIM28-208ENST00000597172 SPACA4Q8TDM5 124 aa5.95□□□□□ -1.46
TRIM28-208ENST00000597172 PPDPFQ9H3Y8 114 aa5.95□□□□□ -1.46
TRIM28-208ENST00000597172 PKIGQ9Y2B9 76 aa5.95□□□□□ -1.46
TRIM28-208ENST00000597172 VPREB1P12018 145 aa5.94□□□□□ -1.46
TRIM28-208ENST00000597172 HSD52Q0P140 79 aa5.94□□□□□ -1.46
TRIM28-208ENST00000597172 Q6ZSA8 131 aa5.94□□□□□ -1.46
TRIM28-208ENST00000597172 LINC00528Q8N1L1 170 aa5.94□□□□□ -1.46
TRIM28-208ENST00000597172 LINC00474Q9P2X8 69 aa5.94□□□□□ -1.46
TRIM28-208ENST00000597172 FSIP2Q5CZC0 6907 aa5.94□□□□□ -1.46
TRIM28-208ENST00000597172 IGKV2-28A0A075B6P5 120 aa5.93□□□□□ -1.46
TRIM28-208ENST00000597172 A4D1N5 150 aa5.93□□□□□ -1.46
TRIM28-208ENST00000597172 IGKV2D-28P01615 120 aa5.93□□□□□ -1.46
TRIM28-208ENST00000597172 FXYD2P54710 66 aa5.93□□□□□ -1.46
TRIM28-208ENST00000597172 IGLV5-37A0A075B6J1 123 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 A0A087WYN8 130 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 PCP4L1A6NKN8 68 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 NDUFC2O95298 119 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 RPL24P83731 157 aaKnown RBP5.92□□□□□ -1.46
TRIM28-208ENST00000597172 BVES-AS1Q5T3Y7 98 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 COPS9Q8WXC6 57 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 DPH3Q96FX2 82 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 C22orf24Q9Y442 160 aa5.92□□□□□ -1.46
TRIM28-208ENST00000597172 HINT1P49773 126 aaPredicted RBP5.91□□□□□ -1.46
TRIM28-208ENST00000597172 FAM19A5Q7Z5A7 132 aaPredicted RBP5.91□□□□□ -1.46
TRIM28-208ENST00000597172 PLAC8Q9NZF1 115 aa5.91□□□□□ -1.46
TRIM28-208ENST00000597172 NCR3O14931 201 aa5.9□□□□□ -1.46
TRIM28-208ENST00000597172 CFC1BP0CG36 223 aa5.9□□□□□ -1.46
TRIM28-208ENST00000597172 CFC1P0CG37 223 aa5.9□□□□□ -1.46
TRIM28-208ENST00000597172 CIRBP-AS1Q8TBR5 109 aa5.9□□□□□ -1.46
TRIM28-208ENST00000597172 TRBV10-2A0A0K0K1G8 114 aa5.89□□□□□ -1.47
TRIM28-208ENST00000597172 M0R378 163 aa5.89□□□□□ -1.47
TRIM28-208ENST00000597172 SCXQ7RTU7 201 aa5.89□□□□□ -1.47
TRIM28-208ENST00000597172 PHF5AQ7RTV0 110 aaKnown RBP5.89□□□□□ -1.47
TRIM28-208ENST00000597172 LINC00337Q8N6G1 96 aa5.89□□□□□ -1.47
TRIM28-208ENST00000597172 C7orf33Q8WU49 177 aa5.89□□□□□ -1.47
TRIM28-208ENST00000597172 LINC00167Q96N53 147 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms