RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 UBE2BP63146 152 aa15.94■□□□□ 0.14
TRIM28-204ENST00000594806 MEIG1Q5JSS6 88 aa15.94■□□□□ 0.14
TRIM28-204ENST00000594806 HNRNPA3P51991 378 aaKnown RBP15.93■□□□□ 0.14
TRIM28-204ENST00000594806 TSPEAR-AS2P59090 65 aa15.93■□□□□ 0.14
TRIM28-204ENST00000594806 HIST3H2BBQ8N257 126 aa15.93■□□□□ 0.14
TRIM28-204ENST00000594806 MRPL55Q7Z7F7 128 aaKnown RBP15.92■□□□□ 0.14
TRIM28-204ENST00000594806 RPL24P83731 157 aaKnown RBP15.91■□□□□ 0.14
TRIM28-204ENST00000594806 SMIM13P0DJ93 91 aa15.89■□□□□ 0.13
TRIM28-204ENST00000594806 C1orf137Q5JT78 98 aa15.89■□□□□ 0.13
TRIM28-204ENST00000594806 NKAPP1Q8N9T2 125 aa15.89■□□□□ 0.13
TRIM28-204ENST00000594806 SPINK6Q6UWN8 80 aa15.88■□□□□ 0.13
TRIM28-204ENST00000594806 HIST1H2BLQ99880 126 aa15.88■□□□□ 0.13
TRIM28-204ENST00000594806 KRTAP29-1A8MX34 341 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-204ENST00000594806 OXTP01178 125 aa15.87■□□□□ 0.13
TRIM28-204ENST00000594806 A0A0U1RRA0 63 aa15.86■□□□□ 0.13
TRIM28-204ENST00000594806 SRSF9Q13242 221 aaKnown RBP eCLIP15.86■□□□□ 0.13
TRIM28-204ENST00000594806 KRTAP11-1Q8IUC1 163 aa15.86■□□□□ 0.13
TRIM28-204ENST00000594806 PKHD1L1Q86WI1 4243 aa15.85■□□□□ 0.13
TRIM28-204ENST00000594806 VPREB1P12018 145 aa15.84■□□□□ 0.13
TRIM28-204ENST00000594806 MIR7-3HGQ8N6C7 128 aa15.84■□□□□ 0.13
TRIM28-204ENST00000594806 LINC00167Q96N53 147 aa15.84■□□□□ 0.13
TRIM28-204ENST00000594806 IGLV7-43P04211 117 aa15.82■□□□□ 0.12
TRIM28-204ENST00000594806 SNRPEP62304 92 aaKnown RBP15.82■□□□□ 0.12
TRIM28-204ENST00000594806 LOC107984156A0A0G2JMH3 177 aa15.79■□□□□ 0.12
TRIM28-204ENST00000594806 C5orf52A6NGY3 159 aa15.79■□□□□ 0.12
TRIM28-204ENST00000594806 ARL17AQ8IVW1 177 aa15.79■□□□□ 0.12
TRIM28-204ENST00000594806 A0A0J9YXY3 114 aa15.78■□□□□ 0.12
TRIM28-204ENST00000594806 MYCBP2O75592 4640 aa15.78■□□□□ 0.12
TRIM28-204ENST00000594806 GAGE10A6NGK3 116 aa15.76■□□□□ 0.11
TRIM28-204ENST00000594806 RPL37AP8A6NKH3 93 aa15.76■□□□□ 0.11
TRIM28-204ENST00000594806 J3QL48 77 aa15.76■□□□□ 0.11
TRIM28-204ENST00000594806 REG3GQ6UW15 175 aa15.76■□□□□ 0.11
TRIM28-204ENST00000594806 BOD1L2Q8IYS8 172 aa15.76■□□□□ 0.11
TRIM28-204ENST00000594806 IGKV2D-26A0A0A0MRZ7 120 aa15.75■□□□□ 0.11
TRIM28-204ENST00000594806 DIRC1Q969H9 104 aa15.74■□□□□ 0.11
TRIM28-204ENST00000594806 DMBT1Q9UGM3 2413 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-204ENST00000594806 IGLV1-50A0A075B6I6 118 aa15.73■□□□□ 0.11
TRIM28-204ENST00000594806 ZNF815PA8K554 130 aa15.73■□□□□ 0.11
TRIM28-204ENST00000594806 M0R378 163 aa15.73■□□□□ 0.11
TRIM28-204ENST00000594806 TIMM17BO60830 172 aa15.73■□□□□ 0.11
TRIM28-204ENST00000594806 Q8NDZ9 215 aa15.73■□□□□ 0.11
TRIM28-204ENST00000594806 MIEN1Q9BRT3 115 aa15.73■□□□□ 0.11
TRIM28-204ENST00000594806 BCE1O60756 84 aa15.72■□□□□ 0.11
TRIM28-204ENST00000594806 ATOH7Q8N100 152 aa15.72■□□□□ 0.11
TRIM28-204ENST00000594806 DAND5Q8N907 189 aa15.71■□□□□ 0.11
TRIM28-204ENST00000594806 ZNF861PO60384 105 aa15.7■□□□□ 0.1
TRIM28-204ENST00000594806 ANKRD39Q53RE8 183 aa15.7■□□□□ 0.1
TRIM28-204ENST00000594806 IGKV2-28A0A075B6P5 120 aa15.69■□□□□ 0.1
TRIM28-204ENST00000594806 IGKV2D-28P01615 120 aa15.69■□□□□ 0.1
TRIM28-204ENST00000594806 HSBP1L1C9JCN9 74 aa15.67■□□□□ 0.1
TRIM28-204ENST00000594806 H0Y9J4 135 aa15.67■□□□□ 0.1
TRIM28-204ENST00000594806 RPL28P46779 137 aaKnown RBP15.67■□□□□ 0.1
TRIM28-204ENST00000594806 ADAMTSL4-AS1Q5T5F5 129 aa15.67■□□□□ 0.1
TRIM28-204ENST00000594806 NDUFC2O95298 119 aa15.66■□□□□ 0.1
TRIM28-204ENST00000594806 LINC01600Q96MT4 127 aa15.66■□□□□ 0.1
TRIM28-204ENST00000594806 TRBV10-2A0A0K0K1G8 114 aa15.65■□□□□ 0.1
TRIM28-204ENST00000594806 LITAFQ99732 161 aa15.65■□□□□ 0.1
TRIM28-204ENST00000594806 TTTY13Q9BZ97 58 aa15.65■□□□□ 0.1
TRIM28-204ENST00000594806 LRP1Q07954 4544 aaKnown RBP15.64■□□□□ 0.09
TRIM28-204ENST00000594806 FAT3Q8TDW7 4589 aa15.64■□□□□ 0.09
TRIM28-204ENST00000594806 SCGB1D4Q6XE38 83 aa15.63■□□□□ 0.09
TRIM28-204ENST00000594806 TMEM126AQ9H061 195 aa15.63■□□□□ 0.09
TRIM28-204ENST00000594806 NCR3O14931 201 aa15.62■□□□□ 0.09
TRIM28-204ENST00000594806 SCGB1D1O95968 90 aa15.62■□□□□ 0.09
TRIM28-204ENST00000594806 SPANXB1Q9NS25 103 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-204ENST00000594806 TMEM238C9JI98 176 aa15.6■□□□□ 0.09
TRIM28-204ENST00000594806 UBE2AP49459 152 aa15.6■□□□□ 0.09
TRIM28-204ENST00000594806 S100A12P80511 92 aa15.6■□□□□ 0.09
TRIM28-204ENST00000594806 SOSTDC1Q6X4U4 206 aa15.6■□□□□ 0.09
TRIM28-204ENST00000594806 PRYO14603 147 aa15.59■□□□□ 0.09
TRIM28-204ENST00000594806 LINC00308Q8TCZ7 52 aa15.59■□□□□ 0.09
TRIM28-204ENST00000594806 PCP2Q8IVA1 136 aa15.58■□□□□ 0.08
TRIM28-204ENST00000594806 KCNQ1DNQ9H478 68 aa15.58■□□□□ 0.08
TRIM28-204ENST00000594806 MT1HL1P0DM35 61 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 NPC2P61916 151 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 Q6ZVH6 145 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 KRTAP13-1Q8IUC0 172 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 COPS9Q8WXC6 57 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 SPANXDQ9BXN6 97 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 SPANXCQ9NY87 97 aa15.57■□□□□ 0.08
TRIM28-204ENST00000594806 FAM19A1Q7Z5A9 133 aa15.56■□□□□ 0.08
TRIM28-204ENST00000594806 TRBV10-3A0A0K0K1G6 114 aa15.55■□□□□ 0.08
TRIM28-204ENST00000594806 PPDPFQ9H3Y8 114 aa15.55■□□□□ 0.08
TRIM28-204ENST00000594806 EIF4EBP3O60516 100 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-204ENST00000594806 DDTP30046 118 aa15.54■□□□□ 0.08
TRIM28-204ENST00000594806 IFITM1P13164 125 aa15.53■□□□□ 0.08
TRIM28-204ENST00000594806 SPRR1AP35321 89 aa15.52■□□□□ 0.08
TRIM28-204ENST00000594806 S100A7L2Q5SY68 101 aa15.52■□□□□ 0.08
TRIM28-204ENST00000594806 LINC00337Q8N6G1 96 aa15.51■□□□□ 0.07
TRIM28-204ENST00000594806 CBY1Q9Y3M2 126 aa15.51■□□□□ 0.07
TRIM28-204ENST00000594806 IGLV6-57P01721 117 aa15.5■□□□□ 0.07
TRIM28-204ENST00000594806 KRTAP10-8P60410 259 aa15.5■□□□□ 0.07
TRIM28-204ENST00000594806 KRTAP1-4P0C5Y4 121 aa15.49■□□□□ 0.07
TRIM28-204ENST00000594806 PRLHP81277 87 aa15.49■□□□□ 0.07
TRIM28-204ENST00000594806 LINC00518Q8N0U6 118 aa15.49■□□□□ 0.07
TRIM28-204ENST00000594806 JOSD1Q15040 202 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-204ENST00000594806 ETDCA0A1B0GVM5 59 aa15.45■□□□□ 0.06
TRIM28-204ENST00000594806 KRTAP4-16G5E9R7 235 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-204ENST00000594806 RPL13AP40429 203 aaKnown RBP15.42■□□□□ 0.06
TRIM28-204ENST00000594806 TMA7Q9Y2S6 64 aaKnown RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms