RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 GAGE10A6NGK3 116 aa6.41□□□□□ -1.38
VPS4B-202ENST00000588059 KRTAP13-2Q52LG2 175 aa6.41□□□□□ -1.38
VPS4B-202ENST00000588059 ERG28Q9UKR5 140 aa6.41□□□□□ -1.38
VPS4B-202ENST00000588059 IGLV7-46A0A075B6I9 117 aa6.4□□□□□ -1.38
VPS4B-202ENST00000588059 TMEM223A0PJW6 202 aa6.4□□□□□ -1.38
VPS4B-202ENST00000588059 LEPROTL1O95214 131 aa6.4□□□□□ -1.38
VPS4B-202ENST00000588059 RPL28P46779 137 aaKnown RBP6.4□□□□□ -1.38
VPS4B-202ENST00000588059 NKAPP1Q8N9T2 125 aa6.4□□□□□ -1.38
VPS4B-202ENST00000588059 TP73-AS1Q9UF72 201 aa6.4□□□□□ -1.38
VPS4B-202ENST00000588059 RPL37AP8A6NKH3 93 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 SCO1O75880 301 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 FABP4P15090 132 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 LINC00310P59036 64 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 SFTA2Q6UW10 78 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 LINC00167Q96N53 147 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 ANAPC11Q9NYG5 84 aa6.39□□□□□ -1.39
VPS4B-202ENST00000588059 A0A0U1RRA0 63 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 BCE1O60756 84 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 LINC00158P58513 81 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 COX17Q14061 63 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 LINC00304Q8N9R0 145 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 SND1-IT1Q9HBX3 110 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 HSPB8Q9UJY1 196 aa6.38□□□□□ -1.39
VPS4B-202ENST00000588059 IGLV5-37A0A075B6J1 123 aa6.36□□□□□ -1.39
VPS4B-202ENST00000588059 ATP6V1G1O75348 118 aa6.36□□□□□ -1.39
VPS4B-202ENST00000588059 LINC01547P58512 204 aaPredicted RBP6.36□□□□□ -1.39
VPS4B-202ENST00000588059 RPL24P83731 157 aaKnown RBP6.36□□□□□ -1.39
VPS4B-202ENST00000588059 MEIG1Q5JSS6 88 aa6.36□□□□□ -1.39
VPS4B-202ENST00000588059 IGKV2-28A0A075B6P5 120 aa6.35□□□□□ -1.39
VPS4B-202ENST00000588059 IGKV2D-28P01615 120 aa6.35□□□□□ -1.39
VPS4B-202ENST00000588059 PMCHL2Q9BQD1 86 aa6.35□□□□□ -1.39
VPS4B-202ENST00000588059 DPM2O94777 84 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 SMIM13P0DJ93 91 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 VPREB1P12018 145 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 PLNP26678 52 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 FAM229BQ4G0N7 80 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 KRTAP13-1Q8IUC0 172 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 MAP1LC3CQ9BXW4 147 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 PPDPFQ9H3Y8 114 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 NDUFA12Q9UI09 145 aa6.34□□□□□ -1.39
VPS4B-202ENST00000588059 UBE2AP49459 152 aa6.33□□□□□ -1.4
VPS4B-202ENST00000588059 HERVK_113P61574 105 aa6.33□□□□□ -1.4
VPS4B-202ENST00000588059 HERV-K104P63124 156 aa6.33□□□□□ -1.4
VPS4B-202ENST00000588059 MYMXA0A1B0GTQ4 84 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 LEPROTO15243 131 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BKO60814 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 IGKCP01834 107 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BJP06899 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BOP23527 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BBP33778 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BDP58876 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BCP62807 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 CTAG1AP78358 180 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST2H2BEQ16778 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.32□□□□□ -1.4
VPS4B-202ENST00000588059 Q8NDZ9 215 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BHQ93079 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 PLEKHB2Q96CS7 222 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BNQ99877 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 HIST1H2BMQ99879 126 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 KRTAP4-1Q9BYQ7 146 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 KRTAP3-3Q9BYR6 98 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 KRTAP3-2Q9BYR7 98 aa6.32□□□□□ -1.4
VPS4B-202ENST00000588059 LINC00587B1AMM8 73 aa6.31□□□□□ -1.4
VPS4B-202ENST00000588059 TSPEAR-AS2P59090 65 aa6.31□□□□□ -1.4
VPS4B-202ENST00000588059 ASB16-AS1Q495Z4 193 aa6.31□□□□□ -1.4
VPS4B-202ENST00000588059 MIR7-3HGQ8N6C7 128 aa6.31□□□□□ -1.4
VPS4B-202ENST00000588059 IGKV2D-26A0A0A0MRZ7 120 aa6.3□□□□□ -1.4
VPS4B-202ENST00000588059 TMEM238C9JI98 176 aa6.3□□□□□ -1.4
VPS4B-202ENST00000588059 LGALS3P17931 250 aaKnown RBP6.3□□□□□ -1.4
VPS4B-202ENST00000588059 FAM19A1Q7Z5A9 133 aa6.3□□□□□ -1.4
VPS4B-202ENST00000588059 BOD1L2Q8IYS8 172 aa6.3□□□□□ -1.4
VPS4B-202ENST00000588059 J3QQQ9 107 aa6.29□□□□□ -1.4
VPS4B-202ENST00000588059 PRLHP81277 87 aa6.29□□□□□ -1.4
VPS4B-202ENST00000588059 TMEM126AQ9H061 195 aa6.29□□□□□ -1.4
VPS4B-202ENST00000588059 SYS1-DBNDD2H3BUS1 97 aa6.28□□□□□ -1.4
VPS4B-202ENST00000588059 M0R378 163 aa6.28□□□□□ -1.4
VPS4B-202ENST00000588059 NCR3O14931 201 aa6.28□□□□□ -1.4
VPS4B-202ENST00000588059 KRTAP13-3Q3SY46 172 aa6.28□□□□□ -1.4
VPS4B-202ENST00000588059 DAND5Q8N907 189 aa6.28□□□□□ -1.4
VPS4B-202ENST00000588059 NMUP48645 174 aa6.27□□□□□ -1.41
VPS4B-202ENST00000588059 FP248Q71RG6 208 aaPredicted RBP6.27□□□□□ -1.41
VPS4B-202ENST00000588059 C3orf22Q8N5N4 141 aa6.26□□□□□ -1.41
VPS4B-202ENST00000588059 E9PLD3 99 aa6.25□□□□□ -1.41
VPS4B-202ENST00000588059 PET117Q6UWS5 81 aa6.25□□□□□ -1.41
VPS4B-202ENST00000588059 LINC00337Q8N6G1 96 aa6.25□□□□□ -1.41
VPS4B-202ENST00000588059 MIEN1Q9BRT3 115 aa6.25□□□□□ -1.41
VPS4B-202ENST00000588059 KRTDAPP60985 99 aa6.24□□□□□ -1.41
VPS4B-202ENST00000588059 LINC01545Q5VT33 79 aa6.24□□□□□ -1.41
VPS4B-202ENST00000588059 HIGD2AQ9BW72 106 aa6.24□□□□□ -1.41
VPS4B-202ENST00000588059 PRYO14603 147 aa6.23□□□□□ -1.41
VPS4B-202ENST00000588059 C3orf79P0CE67 100 aa6.23□□□□□ -1.41
VPS4B-202ENST00000588059 SEC61BP60468 96 aaKnown RBP6.23□□□□□ -1.41
VPS4B-202ENST00000588059 NPC2P61916 151 aa6.23□□□□□ -1.41
VPS4B-202ENST00000588059 S100A12P80511 92 aa6.23□□□□□ -1.41
VPS4B-202ENST00000588059 LCE2CQ5TA81 110 aa6.23□□□□□ -1.41
VPS4B-202ENST00000588059 A0A0J9YXY3 114 aa6.22□□□□□ -1.41
VPS4B-202ENST00000588059 TRBV10-3A0A0K0K1G6 114 aa6.22□□□□□ -1.41
VPS4B-202ENST00000588059 COA6Q5JTJ3 125 aaKnown RBP6.22□□□□□ -1.41
VPS4B-202ENST00000588059 SPAG11AQ6PDA7 123 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms