RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TRACP01848 142 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 CARD19Q96LW7 228 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 TMEM126AQ9H061 195 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 APLNQ9ULZ1 77 aa9.41□□□□□ -0.9
LIG3-205ENST00000585941 NUPR2A6NF83 97 aa9.4□□□□□ -0.9
LIG3-205ENST00000585941 Q6ZRU5 148 aa9.39□□□□□ -0.91
LIG3-205ENST00000585941 SYCNQ0VAF6 134 aa9.39□□□□□ -0.91
LIG3-205ENST00000585941 UBE2DNLQ8IWF7 75 aa9.39□□□□□ -0.91
LIG3-205ENST00000585941 PPDPFLQ8WWR9 84 aa9.39□□□□□ -0.91
LIG3-205ENST00000585941 NDUFC2-KCTD14E9PQ53 114 aa9.38□□□□□ -0.91
LIG3-205ENST00000585941 RNF151Q2KHN1 245 aa9.38□□□□□ -0.91
LIG3-205ENST00000585941 S100A7L2Q5SY68 101 aa9.36□□□□□ -0.91
LIG3-205ENST00000585941 USP17L23D6RBM5 183 aa9.35□□□□□ -0.91
LIG3-205ENST00000585941 NCR3O14931 201 aa9.35□□□□□ -0.91
LIG3-205ENST00000585941 PRR3P79522 188 aaKnown RBP9.35□□□□□ -0.91
LIG3-205ENST00000585941 VPS25Q9BRG1 176 aa9.35□□□□□ -0.91
LIG3-205ENST00000585941 A0A1B0GX51 115 aa9.33□□□□□ -0.92
LIG3-205ENST00000585941 DNAL4O96015 105 aa9.33□□□□□ -0.92
LIG3-205ENST00000585941 TLX1NBP0CAT3 122 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 Q8NDZ9 215 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 FAM218AQ96MZ4 157 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 XAGE1AQ9HD64 81 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 CBY1Q9Y3M2 126 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 SNCGO76070 127 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 IGLV6-57P01721 117 aa9.32□□□□□ -0.92
LIG3-205ENST00000585941 RPL18AQ02543 176 aaKnown RBP9.31□□□□□ -0.92
LIG3-205ENST00000585941 TTC32Q5I0X7 151 aa9.31□□□□□ -0.92
LIG3-205ENST00000585941 DYNC2H1Q8NCM8 4307 aaKnown RBP9.3□□□□□ -0.92
LIG3-205ENST00000585941 BAALC-AS2P0C853 105 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 VPREB1P12018 145 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 DNHD1Q96M86 4753 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 A0A087WYN8 130 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 M0R378 163 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 CASC10Q5T4H9 136 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 Q6ZRP5 223 aa9.29□□□□□ -0.92
LIG3-205ENST00000585941 GAGE2EQ4V326 116 aa9.28□□□□□ -0.92
LIG3-205ENST00000585941 C6orf99Q4VX62 202 aa9.28□□□□□ -0.92
LIG3-205ENST00000585941 GAGE2DQ9UEU5 116 aa9.28□□□□□ -0.92
LIG3-205ENST00000585941 LECT2O14960 151 aa9.27□□□□□ -0.93
LIG3-205ENST00000585941 PSCAO43653 123 aa9.27□□□□□ -0.93
LIG3-205ENST00000585941 KRTAP1-5Q9BYS1 174 aa9.27□□□□□ -0.93
LIG3-205ENST00000585941 C14orf177Q52M58 125 aa9.26□□□□□ -0.93
LIG3-205ENST00000585941 PLA2G2DQ9UNK4 145 aa9.26□□□□□ -0.93
LIG3-205ENST00000585941 TRAV23DV6A0A075B6W5 121 aa9.26□□□□□ -0.93
LIG3-205ENST00000585941 TRBV10-3A0A0K0K1G6 114 aa9.26□□□□□ -0.93
LIG3-205ENST00000585941 TEX49A0A1B0GTD5 131 aa9.26□□□□□ -0.93
LIG3-205ENST00000585941 SLPIP03973 132 aa9.26□□□□□ -0.93
LIG3-205ENST00000585941 DNAH1Q9P2D7 4330 aa9.25□□□□□ -0.93
LIG3-205ENST00000585941 LINC00167Q96N53 147 aa9.25□□□□□ -0.93
LIG3-205ENST00000585941 TRBV7-6A0A0J9YX20 115 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 NBDYA0A0U1RRE5 68 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 LOC107984640A0A0U1RRK4 108 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 C9orf129Q5T035 196 aaKnown RBP9.24□□□□□ -0.93
LIG3-205ENST00000585941 Q8N814 137 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 DIRC1Q969H9 104 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 ORMDL1Q9P0S3 153 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 MEGF8Q7Z7M0 2845 aa9.24□□□□□ -0.93
LIG3-205ENST00000585941 NKAPP1Q8N9T2 125 aa9.23□□□□□ -0.93
LIG3-205ENST00000585941 CNBPP62633 177 aaKnown RBP9.23□□□□□ -0.93
LIG3-205ENST00000585941 LINC00575Q6W349 94 aa9.23□□□□□ -0.93
LIG3-205ENST00000585941 IGLV5-37A0A075B6J1 123 aa9.21□□□□□ -0.93
LIG3-205ENST00000585941 H3BQ85 93 aa9.21□□□□□ -0.93
LIG3-205ENST00000585941 ZNF73O43830 326 aaPredicted RBP9.21□□□□□ -0.93
LIG3-205ENST00000585941 INAFM2P0DMQ5 153 aa9.21□□□□□ -0.93
LIG3-205ENST00000585941 PRKDCP78527 4128 aaKnown RBP9.21□□□□□ -0.94
LIG3-205ENST00000585941 hADV29S1A0JD25 119 aa9.2□□□□□ -0.94
LIG3-205ENST00000585941 FBN3Q75N90 2809 aa9.19□□□□□ -0.94
LIG3-205ENST00000585941 FAM240AA0A1B0GVK7 77 aa9.19□□□□□ -0.94
LIG3-205ENST00000585941 TMEM256-PLSCR3K7ERE1 68 aa9.19□□□□□ -0.94
LIG3-205ENST00000585941 PKIGQ9Y2B9 76 aa9.19□□□□□ -0.94
LIG3-205ENST00000585941 C22orf24Q9Y442 160 aa9.19□□□□□ -0.94
LIG3-205ENST00000585941 GHRHP01286 108 aa9.18□□□□□ -0.94
LIG3-205ENST00000585941 COX7BP24311 80 aa9.18□□□□□ -0.94
LIG3-205ENST00000585941 TENM2Q9NT68 2774 aa9.17□□□□□ -0.94
LIG3-205ENST00000585941 ELOF1P60002 83 aaKnown RBP9.17□□□□□ -0.94
LIG3-205ENST00000585941 GAGE2BQ13066 116 aa9.17□□□□□ -0.94
LIG3-205ENST00000585941 SIGMAR1Q99720 223 aa9.17□□□□□ -0.94
LIG3-205ENST00000585941 KCNQ1DNQ9H478 68 aa9.17□□□□□ -0.94
LIG3-205ENST00000585941 ACYP1P07311 99 aa9.16□□□□□ -0.94
LIG3-205ENST00000585941 SERTAD4-AS1Q5TG53 156 aa9.16□□□□□ -0.94
LIG3-205ENST00000585941 C7orf33Q8WU49 177 aa9.16□□□□□ -0.94
LIG3-205ENST00000585941 OBSCN-AS1Q96MR7 158 aa9.16□□□□□ -0.94
LIG3-205ENST00000585941 CDIP1Q9H305 208 aa9.16□□□□□ -0.94
LIG3-205ENST00000585941 CSMD3Q7Z407 3707 aa9.15□□□□□ -0.94
LIG3-205ENST00000585941 DNAH7Q8WXX0 4024 aa9.15□□□□□ -0.94
LIG3-205ENST00000585941 C16orf90A8MZG2 172 aa9.14□□□□□ -0.95
LIG3-205ENST00000585941 JMJD7-PLA2G4BH0Y9G9 81 aa9.14□□□□□ -0.95
LIG3-205ENST00000585941 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.13□□□□□ -0.95
LIG3-205ENST00000585941 Q6ZRN7 208 aaPredicted RBP9.13□□□□□ -0.95
LIG3-205ENST00000585941 LRCOL1A6NCL2 159 aa9.13□□□□□ -0.95
LIG3-205ENST00000585941 PRYO14603 147 aa9.13□□□□□ -0.95
LIG3-205ENST00000585941 LINC00528Q8N1L1 170 aa9.12□□□□□ -0.95
LIG3-205ENST00000585941 IGLV1-50A0A075B6I6 118 aa9.11□□□□□ -0.95
LIG3-205ENST00000585941 PLECQ15149 4684 aaKnown RBP9.11□□□□□ -0.95
LIG3-205ENST00000585941 MRPL55Q7Z7F7 128 aaKnown RBP9.11□□□□□ -0.95
LIG3-205ENST00000585941 FAM168BA1KXE4 195 aa9.1□□□□□ -0.95
LIG3-205ENST00000585941 Q6ZQY7 126 aa9.1□□□□□ -0.95
LIG3-205ENST00000585941 VPS13DQ5THJ4 4388 aa9.1□□□□□ -0.95
LIG3-205ENST00000585941 C9orf163Q8N9P6 203 aa9.1□□□□□ -0.95
LIG3-205ENST00000585941 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms