RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 CCL18P55774 89 aa1.67□□□□□ -2.14
SMCHD1-202ENST00000577300 KLK9Q9UKQ9 250 aa1.67□□□□□ -2.14
SMCHD1-202ENST00000577300 MALRD1Q5VYJ5 2156 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 IGHV3-64A0A075B6Q5 118 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 IGKV2-29A2NJV5 120 aaPredicted RBP1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 H0Y9P7 68 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 H3BQ85 93 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 NDUFA4O00483 81 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 COA5Q86WW8 74 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 DMAC1Q96GE9 116 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 GAFA1Q96PS6 74 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 CNFNQ9BYD5 112 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 DNAJC13O75165 2243 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 FREM3P0C091 2139 aa1.66□□□□□ -2.14
SMCHD1-202ENST00000577300 TRGV4A0A0C4DH28 118 aa1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 CCL3L1P16619 93 aa1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 RPS27P42677 84 aaKnown RBP1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 ERHP84090 104 aaKnown RBP1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 LINC00308Q8TCZ7 52 aa1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 LINC00472Q9H8W2 130 aa1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 FREM1Q5H8C1 2179 aa1.65□□□□□ -2.15
SMCHD1-202ENST00000577300 A0A087WTM6 91 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 A0A1B0GU33 70 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 ETDCA0A1B0GVM5 59 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 M0R2N4 97 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 PRB1P04280 392 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 ST20-AS1Q8NBB2 130 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 SMIM2Q9BVW6 85 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 ARFGEF3Q5TH69 2177 aa1.64□□□□□ -2.15
SMCHD1-202ENST00000577300 GOLGA4Q13439 2230 aaKnown RBP1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 CR1P17927 2039 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 TRBV6-4A0A1B0GX49 114 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 UQCR11O14957 56 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 IGLV3-1P01715 115 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 DEFB114Q30KQ6 69 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 DEFB112Q30KQ8 113 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 KCNQ1DNQ9H478 68 aa1.63□□□□□ -2.15
SMCHD1-202ENST00000577300 MED12Q93074 2177 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 DOCK10Q96BY6 2186 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 TRGV2A0A075B6R0 118 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 MGPP08493 103 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 PDE6HQ13956 83 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 SPINK9Q5DT21 86 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 DEFB106AQ8N104 65 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 SMIM11BQ8TCY0 68 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 SSC5DA1L4H1 1573 aa1.62□□□□□ -2.15
SMCHD1-202ENST00000577300 NDUFA1O15239 70 aa1.61□□□□□ -2.15
SMCHD1-202ENST00000577300 SPINT4Q6UDR6 99 aa1.61□□□□□ -2.15
SMCHD1-202ENST00000577300 CEP192Q8TEP8 1941 aa1.61□□□□□ -2.15
SMCHD1-202ENST00000577300 KIAA0100Q14667 2235 aaKnown RBP1.6□□□□□ -2.15
SMCHD1-202ENST00000577300 NBDYA0A0U1RRE5 68 aa1.6□□□□□ -2.15
SMCHD1-202ENST00000577300 PIGYQ3MUY2 71 aa1.6□□□□□ -2.15
SMCHD1-202ENST00000577300 Q96NJ1 140 aa1.6□□□□□ -2.15
SMCHD1-202ENST00000577300 SDK1Q7Z5N4 2213 aa1.6□□□□□ -2.15
SMCHD1-202ENST00000577300 IGLV7-43P04211 117 aa1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 COX7BP24311 80 aa1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 POLR2KP53803 58 aaKnown RBP1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 LINC00158P58513 81 aa1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 PRB3Q04118 309 aaPredicted RBP1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 DEFB132Q7Z7B7 95 aa1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 PATE1Q8WXA2 126 aa1.59□□□□□ -2.15
SMCHD1-202ENST00000577300 PRRC2BQ5JSZ5 2229 aaKnown RBP1.59□□□□□ -2.16
SMCHD1-202ENST00000577300 SORL1Q92673 2214 aa1.58□□□□□ -2.16
SMCHD1-202ENST00000577300 TENM1Q9UKZ4 2725 aa1.58□□□□□ -2.16
SMCHD1-202ENST00000577300 TRGV1A0A0A0MS02 117 aa1.58□□□□□ -2.16
SMCHD1-202ENST00000577300 RPL39LQ96EH5 51 aaKnown RBP1.58□□□□□ -2.16
SMCHD1-202ENST00000577300 PRO2289Q9P1D8 64 aa1.58□□□□□ -2.16
SMCHD1-202ENST00000577300 PRR14LQ5THK1 2151 aa1.58□□□□□ -2.16
SMCHD1-202ENST00000577300 A0A096LNT2 108 aa1.57□□□□□ -2.16
SMCHD1-202ENST00000577300 A0A1B0GU69 56 aa1.57□□□□□ -2.16
SMCHD1-202ENST00000577300 HRES1P13985 223 aa1.57□□□□□ -2.16
SMCHD1-202ENST00000577300 RPL39P62891 51 aaKnown RBP1.57□□□□□ -2.16
SMCHD1-202ENST00000577300 PRO3102Q9H379 93 aa1.57□□□□□ -2.16
SMCHD1-202ENST00000577300 ABCA4P78363 2273 aa1.57□□□□□ -2.16
SMCHD1-202ENST00000577300 IGKV2-40A0A087WW87 121 aaPredicted RBP1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 J3QKU1 62 aa1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 IGKV2D-40P01614 121 aaPredicted RBP1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 C5orf56Q8N8D9 126 aa1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 LEAP2Q969E1 77 aa1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 CDKN2A-AS1Q9UH64 79 aa1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 TNCP24821 2201 aa1.56□□□□□ -2.16
SMCHD1-202ENST00000577300 CACNA1DQ01668 2161 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 COL4A5P29400 1685 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 A0A1W2PNN7 141 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 TPRXLQ17RH7 258 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 LINC00575Q6W349 94 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 R4GN34 69 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 ALPK2Q86TB3 2170 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 TNRC6CQ9HCJ0 1690 aaKnown RBP1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 CUL9Q8IWT3 2517 aa1.55□□□□□ -2.16
SMCHD1-202ENST00000577300 DEFB131BA0A096LNP1 70 aa1.54□□□□□ -2.16
SMCHD1-202ENST00000577300 I3L2K1 104 aa1.54□□□□□ -2.16
SMCHD1-202ENST00000577300 PRCDQ00LT1 54 aa1.54□□□□□ -2.16
SMCHD1-202ENST00000577300 Q6ZQY7 126 aa1.54□□□□□ -2.16
SMCHD1-202ENST00000577300 Q8IZM0 81 aa1.54□□□□□ -2.16
SMCHD1-202ENST00000577300 RPL37AP61513 92 aaKnown RBP1.53□□□□□ -2.16
SMCHD1-202ENST00000577300 SPACA4Q8TDM5 124 aa1.53□□□□□ -2.16
SMCHD1-202ENST00000577300 CCL19Q99731 98 aa1.53□□□□□ -2.16
SMCHD1-202ENST00000577300 ALMS1Q8TCU4 4167 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms