RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 C11orf86A6NJI1 115 aa7.89□□□□□ -1.15
CIITA-211ENST00000576601 C3orf22Q8N5N4 141 aa7.89□□□□□ -1.15
CIITA-211ENST00000576601 C18orf32Q8TCD1 76 aa7.89□□□□□ -1.15
CIITA-211ENST00000576601 KRTAP9-7A8MTY7 169 aa7.88□□□□□ -1.15
CIITA-211ENST00000576601 LCE2CQ5TA81 110 aa7.88□□□□□ -1.15
CIITA-211ENST00000576601 COMMD7Q86VX2 200 aa7.87□□□□□ -1.15
CIITA-211ENST00000576601 IGKV2D-26A0A0A0MRZ7 120 aa7.86□□□□□ -1.15
CIITA-211ENST00000576601 HBDP02042 147 aa7.86□□□□□ -1.15
CIITA-211ENST00000576601 RPS10P5Q9NQ39 176 aa7.86□□□□□ -1.15
CIITA-211ENST00000576601 ASB16-AS1Q495Z4 193 aa7.85□□□□□ -1.15
CIITA-211ENST00000576601 COX19Q49B96 90 aa7.85□□□□□ -1.15
CIITA-211ENST00000576601 PLEKHB2Q96CS7 222 aa7.85□□□□□ -1.15
CIITA-211ENST00000576601 FLGP20930 4061 aaPredicted RBP7.84□□□□□ -1.15
CIITA-211ENST00000576601 LINC00614P0C842 121 aa7.84□□□□□ -1.15
CIITA-211ENST00000576601 C10orf91Q5T1B1 145 aa7.84□□□□□ -1.15
CIITA-211ENST00000576601 TMEM170BQ5T4T1 132 aa7.84□□□□□ -1.15
CIITA-211ENST00000576601 HIGD2AQ9BW72 106 aa7.84□□□□□ -1.15
CIITA-211ENST00000576601 SSPOA2VEC9 5147 aa7.84□□□□□ -1.15
CIITA-211ENST00000576601 A0A0U1RRA0 63 aa7.83□□□□□ -1.16
CIITA-211ENST00000576601 COX17Q14061 63 aa7.83□□□□□ -1.16
CIITA-211ENST00000576601 RHEBQ15382 184 aa7.83□□□□□ -1.16
CIITA-211ENST00000576601 BAGE3Q86Y29 109 aa7.83□□□□□ -1.16
CIITA-211ENST00000576601 CBLN2Q8IUK8 224 aa7.83□□□□□ -1.16
CIITA-211ENST00000576601 USH2AO75445 5202 aa7.82□□□□□ -1.16
CIITA-211ENST00000576601 RPL24P83731 157 aaKnown RBP7.82□□□□□ -1.16
CIITA-211ENST00000576601 PPDPFQ9H3Y8 114 aa7.82□□□□□ -1.16
CIITA-211ENST00000576601 TRAPPC1Q9Y5R8 145 aa7.82□□□□□ -1.16
CIITA-211ENST00000576601 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.81□□□□□ -1.16
CIITA-211ENST00000576601 KRTAP19-2Q3LHN2 52 aa7.81□□□□□ -1.16
CIITA-211ENST00000576601 LINC00158P58513 81 aa7.8□□□□□ -1.16
CIITA-211ENST00000576601 SPRR4Q96PI1 79 aa7.8□□□□□ -1.16
CIITA-211ENST00000576601 TMEM223A0PJW6 202 aa7.79□□□□□ -1.16
CIITA-211ENST00000576601 NCR3O14931 201 aa7.79□□□□□ -1.16
CIITA-211ENST00000576601 CHTOPQ9Y3Y2 248 aaKnown RBP7.79□□□□□ -1.16
CIITA-211ENST00000576601 SMIM13P0DJ93 91 aa7.78□□□□□ -1.16
CIITA-211ENST00000576601 MT1HP80294 61 aa7.78□□□□□ -1.16
CIITA-211ENST00000576601 KRTAP13-3Q3SY46 172 aa7.78□□□□□ -1.16
CIITA-211ENST00000576601 LORP23490 312 aaPredicted RBP7.77□□□□□ -1.17
CIITA-211ENST00000576601 DAND5Q8N907 189 aa7.77□□□□□ -1.17
CIITA-211ENST00000576601 SFTA2Q6UW10 78 aa7.76□□□□□ -1.17
CIITA-211ENST00000576601 PRYO14603 147 aa7.75□□□□□ -1.17
CIITA-211ENST00000576601 BOD1L2Q8IYS8 172 aa7.75□□□□□ -1.17
CIITA-211ENST00000576601 MIR7-3HGQ8N6C7 128 aa7.75□□□□□ -1.17
CIITA-211ENST00000576601 Q8NBF4 154 aa7.75□□□□□ -1.17
CIITA-211ENST00000576601 KRTAP4-16G5E9R7 235 aaPredicted RBP7.74□□□□□ -1.17
CIITA-211ENST00000576601 IFI27L1Q96BM0 104 aa7.74□□□□□ -1.17
CIITA-211ENST00000576601 TRAV12-1A0A0B4J245 112 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 APOC3P02656 99 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 SPRR1AP35321 89 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 TSPEAR-AS2P59090 65 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 CTAG1AP78358 180 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 MEIG1Q5JSS6 88 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 SMCR5Q8TEV8 140 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 YPEL4Q96NS1 127 aa7.73□□□□□ -1.17
CIITA-211ENST00000576601 TRBV10-3A0A0K0K1G6 114 aa7.72□□□□□ -1.17
CIITA-211ENST00000576601 FCGBPQ9Y6R7 5405 aaPredicted RBP7.71□□□□□ -1.18
CIITA-211ENST00000576601 KRTAP10-6P60371 365 aaPredicted RBP7.71□□□□□ -1.18
CIITA-211ENST00000576601 FAM19A2Q8N3H0 131 aa7.71□□□□□ -1.18
CIITA-211ENST00000576601 LINC00337Q8N6G1 96 aa7.71□□□□□ -1.18
CIITA-211ENST00000576601 KCNQ1DNQ9H478 68 aa7.71□□□□□ -1.18
CIITA-211ENST00000576601 ZNF706Q9Y5V0 76 aaPredicted RBP7.71□□□□□ -1.18
CIITA-211ENST00000576601 ERC2-IT1O76042 136 aa7.7□□□□□ -1.18
CIITA-211ENST00000576601 CFC1BP0CG36 223 aa7.7□□□□□ -1.18
CIITA-211ENST00000576601 SPAG11AQ6PDA7 123 aa7.7□□□□□ -1.18
CIITA-211ENST00000576601 FP248Q71RG6 208 aaPredicted RBP7.7□□□□□ -1.18
CIITA-211ENST00000576601 CHCHD1Q96BP2 118 aaKnown RBP7.7□□□□□ -1.18
CIITA-211ENST00000576601 NDUFA12Q9UI09 145 aa7.7□□□□□ -1.18
CIITA-211ENST00000576601 ETDCA0A1B0GVM5 59 aa7.69□□□□□ -1.18
CIITA-211ENST00000576601 H0Y8G0 127 aa7.69□□□□□ -1.18
CIITA-211ENST00000576601 SEC61BP60468 96 aaKnown RBP7.69□□□□□ -1.18
CIITA-211ENST00000576601 LINC00483Q53H64 154 aa7.69□□□□□ -1.18
CIITA-211ENST00000576601 ATP6V1G1O75348 118 aa7.68□□□□□ -1.18
CIITA-211ENST00000576601 SNAPINO95295 136 aa7.68□□□□□ -1.18
CIITA-211ENST00000576601 B5MCH6 92 aa7.67□□□□□ -1.18
CIITA-211ENST00000576601 LINC00310P59036 64 aa7.67□□□□□ -1.18
CIITA-211ENST00000576601 HERV-K104P63124 156 aa7.67□□□□□ -1.18
CIITA-211ENST00000576601 MOBPQ13875 183 aa7.67□□□□□ -1.18
CIITA-211ENST00000576601 GAGE2AQ6NT46 116 aa7.67□□□□□ -1.18
CIITA-211ENST00000576601 Q9BRP9 147 aa7.67□□□□□ -1.18
CIITA-211ENST00000576601 IGLV9-49A0A0B4J1Y8 123 aa7.66□□□□□ -1.18
CIITA-211ENST00000576601 C4orf48Q5BLP8 95 aa7.66□□□□□ -1.18
CIITA-211ENST00000576601 SVBPQ8N300 66 aa7.66□□□□□ -1.18
CIITA-211ENST00000576601 HSBP1O75506 76 aa7.65□□□□□ -1.18
CIITA-211ENST00000576601 MYMXA0A1B0GTQ4 84 aa7.64□□□□□ -1.19
CIITA-211ENST00000576601 DDTP30046 118 aa7.64□□□□□ -1.19
CIITA-211ENST00000576601 SPINK1P00995 79 aa7.63□□□□□ -1.19
CIITA-211ENST00000576601 NDUFA5Q16718 116 aa7.63□□□□□ -1.19
CIITA-211ENST00000576601 Q8N377 158 aa7.63□□□□□ -1.19
CIITA-211ENST00000576601 PMCHL2Q9BQD1 86 aa7.63□□□□□ -1.19
CIITA-211ENST00000576601 LEPROTO15243 131 aa7.62□□□□□ -1.19
CIITA-211ENST00000576601 EIF4EBP3O60516 100 aaPredicted RBP7.62□□□□□ -1.19
CIITA-211ENST00000576601 SERF1AO75920 110 aa7.62□□□□□ -1.19
CIITA-211ENST00000576601 Q6ZRX8 168 aa7.62□□□□□ -1.19
CIITA-211ENST00000576601 LOC107984156A0A0G2JMH3 177 aa7.61□□□□□ -1.19
CIITA-211ENST00000576601 SOSTDC1Q6X4U4 206 aa7.61□□□□□ -1.19
CIITA-211ENST00000576601 ARL17AQ8IVW1 177 aa7.61□□□□□ -1.19
CIITA-211ENST00000576601 MAP1LC3CQ9BXW4 147 aa7.61□□□□□ -1.19
CIITA-211ENST00000576601 J3QQQ9 107 aa7.6□□□□□ -1.19
CIITA-211ENST00000576601 TRGC2P03986 189 aa7.6□□□□□ -1.19
CIITA-211ENST00000576601 NPC2P61916 151 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms