RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	NDUFC2	O95298	119 aa		11.64	□□□□□ -0.55
VPS53-215	ENST00000573028	COX17	Q14061	63 aa		11.64	□□□□□ -0.55
VPS53-215	ENST00000573028	ENHO	Q6UWT2	76 aa		11.64	□□□□□ -0.55
VPS53-215	ENST00000573028	FAM19A1	Q7Z5A9	133 aa		11.64	□□□□□ -0.55
VPS53-215	ENST00000573028	XAGE1A	Q9HD64	81 aa		11.63	□□□□□ -0.55
VPS53-215	ENST00000573028	CYSRT1	A8MQ03	144 aa		11.62	□□□□□ -0.55
VPS53-215	ENST00000573028	SERP2	Q8N6R1	65 aa		11.61	□□□□□ -0.55
VPS53-215	ENST00000573028	LINC00167	Q96N53	147 aa		11.6	□□□□□ -0.55
VPS53-215	ENST00000573028	CRYGA	P11844	174 aa		11.6	□□□□□ -0.55
VPS53-215	ENST00000573028	LINC00575	Q6W349	94 aa		11.6	□□□□□ -0.55
VPS53-215	ENST00000573028	UBL5	Q9BZL1	73 aa		11.6	□□□□□ -0.55
VPS53-215	ENST00000573028	RBM3	P98179	157 aa	Known RBP	11.58	□□□□□ -0.56
VPS53-215	ENST00000573028		Q6ZQY7	126 aa		11.58	□□□□□ -0.56
VPS53-215	ENST00000573028	GHRH	P01286	108 aa		11.57	□□□□□ -0.56
VPS53-215	ENST00000573028	C9orf66	Q5T8R8	295 aa		11.57	□□□□□ -0.56
VPS53-215	ENST00000573028		M0R2N4	97 aa		11.57	□□□□□ -0.56
VPS53-215	ENST00000573028	TEP1	Q99973	2627 aa	Known RBP	11.57	□□□□□ -0.56
VPS53-215	ENST00000573028	APOC4	P55056	127 aa		11.56	□□□□□ -0.56
VPS53-215	ENST00000573028	HAMP	P81172	84 aa		11.56	□□□□□ -0.56
VPS53-215	ENST00000573028	HIVEP1	P15822	2718 aa		11.55	□□□□□ -0.56
VPS53-215	ENST00000573028	TRBV10-3	A0A0K0K1G6	114 aa		11.54	□□□□□ -0.56
VPS53-215	ENST00000573028	HIGD2B	Q4VC39	106 aa		11.54	□□□□□ -0.56
VPS53-215	ENST00000573028	UPK3B	Q9BT76	320 aa		11.54	□□□□□ -0.56
VPS53-215	ENST00000573028	SPART-AS1	P0CW21	52 aa		11.54	□□□□□ -0.56
VPS53-215	ENST00000573028	OTOG	Q6ZRI0	2925 aa		11.53	□□□□□ -0.56
VPS53-215	ENST00000573028	LELP1	Q5T871	98 aa		11.53	□□□□□ -0.56
VPS53-215	ENST00000573028		Q8NAQ8	132 aa		11.53	□□□□□ -0.56
VPS53-215	ENST00000573028		J3KT08	172 aa		11.52	□□□□□ -0.57
VPS53-215	ENST00000573028	ZNF561-AS1	K7EIQ3	104 aa		11.52	□□□□□ -0.57
VPS53-215	ENST00000573028	DSCR8	Q96T75	97 aa		11.52	□□□□□ -0.57
VPS53-215	ENST00000573028	TRRAP	Q9Y4A5	3859 aa		11.51	□□□□□ -0.57
VPS53-215	ENST00000573028		Q6ZQT0	140 aa		11.51	□□□□□ -0.57
VPS53-215	ENST00000573028	C6orf48	Q9UBA6	75 aa		11.5	□□□□□ -0.57
VPS53-215	ENST00000573028	INAFM1	C9JVW0	142 aa		11.5	□□□□□ -0.57
VPS53-215	ENST00000573028		A0A0J9YWU9	116 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	IGLV6-57	P01721	117 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	IGHV4-30-4	P0DP06	118 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	MIF	P14174	115 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	ATP5EP2	Q5VTU8	51 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	C20orf197	Q8N268	126 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	DIRC1	Q969H9	104 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	PKD1L1	Q8TDX9	2849 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	SCX	Q7RTU7	201 aa		11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	NSD1	Q96L73	2696 aa	Predicted RBP	11.48	□□□□□ -0.57
VPS53-215	ENST00000573028	CAMK2N2	Q96S95	79 aa		11.47	□□□□□ -0.57
VPS53-215	ENST00000573028	WFDC10B	Q8IUB3	73 aa		11.46	□□□□□ -0.57
VPS53-215	ENST00000573028	LYPD5	Q6UWN5	251 aa		11.46	□□□□□ -0.58
VPS53-215	ENST00000573028	PRR34	Q9NV39	138 aa		11.45	□□□□□ -0.58
VPS53-215	ENST00000573028		Q6ZVQ6	151 aa		11.45	□□□□□ -0.58
VPS53-215	ENST00000573028		J3QKU1	62 aa		11.45	□□□□□ -0.58
VPS53-215	ENST00000573028	ZNF73	O43830	326 aa	Predicted RBP	11.45	□□□□□ -0.58
VPS53-215	ENST00000573028	LINC01547	P58512	204 aa	Predicted RBP	11.45	□□□□□ -0.58
VPS53-215	ENST00000573028	TMEM258	P61165	79 aa		11.45	□□□□□ -0.58
VPS53-215	ENST00000573028	RETN	Q9HD89	108 aa		11.44	□□□□□ -0.58
VPS53-215	ENST00000573028	COX7B	P24311	80 aa		11.43	□□□□□ -0.58
VPS53-215	ENST00000573028	DPH3	Q96FX2	82 aa		11.43	□□□□□ -0.58
VPS53-215	ENST00000573028	LOC110117498	A0A087WWA1	95 aa		11.41	□□□□□ -0.58
VPS53-215	ENST00000573028	MUC7	Q8TAX7	377 aa		11.41	□□□□□ -0.58
VPS53-215	ENST00000573028		Q6ZRU5	148 aa		11.39	□□□□□ -0.59
VPS53-215	ENST00000573028	TRAV10	A0A0B4J240	114 aa		11.39	□□□□□ -0.59
VPS53-215	ENST00000573028	KPRP	Q5T749	579 aa	Predicted RBP	11.39	□□□□□ -0.59
VPS53-215	ENST00000573028	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.37	□□□□□ -0.59
VPS53-215	ENST00000573028	OXT	P01178	125 aa		11.36	□□□□□ -0.59
VPS53-215	ENST00000573028	SNURF	Q9Y675	71 aa		11.36	□□□□□ -0.59
VPS53-215	ENST00000573028	VPREB1	P12018	145 aa		11.35	□□□□□ -0.59
VPS53-215	ENST00000573028		Q6ZTC4	211 aa		11.35	□□□□□ -0.59
VPS53-215	ENST00000573028	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	11.35	□□□□□ -0.59
VPS53-215	ENST00000573028	IGKV2D-24	A0A075B6R9	120 aa		11.35	□□□□□ -0.59
VPS53-215	ENST00000573028	ELOF1	P60002	83 aa	Known RBP	11.35	□□□□□ -0.59
VPS53-215	ENST00000573028	OXLD1	Q5BKU9	147 aa		11.35	□□□□□ -0.59
VPS53-215	ENST00000573028	RPS28	P62857	69 aa	Known RBP	11.34	□□□□□ -0.59
VPS53-215	ENST00000573028	DEFB105A	Q8NG35	78 aa		11.34	□□□□□ -0.59
VPS53-215	ENST00000573028	PDE6G	P18545	87 aa		11.33	□□□□□ -0.6
VPS53-215	ENST00000573028	TENM3	Q9P273	2699 aa		11.33	□□□□□ -0.6
VPS53-215	ENST00000573028		Q8N9L7	120 aa		11.32	□□□□□ -0.6
VPS53-215	ENST00000573028		M0R378	163 aa		11.32	□□□□□ -0.6
VPS53-215	ENST00000573028	C1orf43	Q9BWL3	253 aa		11.31	□□□□□ -0.6
VPS53-215	ENST00000573028	EGFEM1P	Q0D2K5	195 aa		11.31	□□□□□ -0.6
VPS53-215	ENST00000573028	C15orf56	Q8N910	161 aa		11.31	□□□□□ -0.6
VPS53-215	ENST00000573028	TRAV7	A0A075B6U4	112 aa		11.31	□□□□□ -0.6
VPS53-215	ENST00000573028	TRBV7-4	A0A0J9YYF1	115 aa		11.3	□□□□□ -0.6
VPS53-215	ENST00000573028	NDUFC2-KCTD14	E9PQ53	114 aa		11.3	□□□□□ -0.6
VPS53-215	ENST00000573028		Q6ZRP5	223 aa		11.3	□□□□□ -0.6
VPS53-215	ENST00000573028	ESRG	Q1W209	222 aa		11.3	□□□□□ -0.6
VPS53-215	ENST00000573028	RMI2	Q96E14	147 aa		11.29	□□□□□ -0.6
VPS53-215	ENST00000573028	F8	P00451	2351 aa		11.28	□□□□□ -0.6
VPS53-215	ENST00000573028	FAM236D	A0A1B0GTK5	79 aa		11.28	□□□□□ -0.6
VPS53-215	ENST00000573028	C3orf84	H3BNL1	204 aa		11.28	□□□□□ -0.6
VPS53-215	ENST00000573028	FAM236C	P0DP71	79 aa		11.28	□□□□□ -0.6
VPS53-215	ENST00000573028		H3BQ85	93 aa		11.27	□□□□□ -0.61
VPS53-215	ENST00000573028	CXCL6	P80162	114 aa		11.27	□□□□□ -0.61
VPS53-215	ENST00000573028	TM2D3	Q9BRN9	247 aa		11.27	□□□□□ -0.61
VPS53-215	ENST00000573028	KRTAP26-1	Q6PEX3	210 aa		11.27	□□□□□ -0.61
VPS53-215	ENST00000573028	LINC00528	Q8N1L1	170 aa		11.27	□□□□□ -0.61
VPS53-215	ENST00000573028	NOTCH1	P46531	2555 aa		11.26	□□□□□ -0.61
VPS53-215	ENST00000573028	C4orf26	Q17RF5	130 aa		11.26	□□□□□ -0.61
VPS53-215	ENST00000573028	NKAPP1	Q8N9T2	125 aa		11.26	□□□□□ -0.61
VPS53-215	ENST00000573028	FLNB	O75369	2602 aa	Known RBP	11.26	□□□□□ -0.61
VPS53-215	ENST00000573028	STAB1	Q9NY15	2570 aa		11.25	□□□□□ -0.61

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