RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 MT-ND6P03923 174 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 XCL1P47992 114 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 ORMDL2Q53FV1 153 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 PP632Q6XCG6 107 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 Q6ZN92 141 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 FA2HQ7L5A8 372 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 CHCHD10Q8WYQ3 142 aaPredicted RBP2.39□□□□□ -2.03
NUP88-202ENST00000570937 DPH3Q96FX2 82 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 MAP1LC3CQ9BXW4 147 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 GNB1LQ9BYB4 327 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 PRO1933Q9H354 126 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 PPDPFQ9H3Y8 114 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 UBE2D4Q9Y2X8 147 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 HECTD4Q9Y4D8 3996 aa2.39□□□□□ -2.03
NUP88-202ENST00000570937 DYNC1H1Q14204 4646 aaKnown RBP2.38□□□□□ -2.03
NUP88-202ENST00000570937 IGHV3-64A0A075B6Q5 118 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 IGHV1-58A0A0C4DH39 117 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 A0A0J9YXY3 114 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 COX7A2LO14548 114 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 APOMO95445 188 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 ADCYAP1P18509 176 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 FUSP35637 526 aaKnown RBP eCLIP2.38□□□□□ -2.03
NUP88-202ENST00000570937 SEC61GP60059 68 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 CNBPP62633 177 aaKnown RBP2.38□□□□□ -2.03
NUP88-202ENST00000570937 MRPS36P82909 103 aaKnown RBP2.38□□□□□ -2.03
NUP88-202ENST00000570937 C6orf226Q5I0X4 101 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 TEX43Q6ZNM6 134 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 Q8N8P6 123 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 C9orf163Q8N9P6 203 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 TMEM126AQ9H061 195 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 SPANXB1Q9NS25 103 aaPredicted RBP2.38□□□□□ -2.03
NUP88-202ENST00000570937 LINC00474Q9P2X8 69 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 CYSLTR1Q9Y271 337 aa2.38□□□□□ -2.03
NUP88-202ENST00000570937 GVQW2A0A096LPI5 108 aaPredicted RBP2.37□□□□□ -2.03
NUP88-202ENST00000570937 TRAV13-1A0A0B4J241 112 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 J3QR89 54 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 RPL39P62891 51 aaKnown RBP2.37□□□□□ -2.03
NUP88-202ENST00000570937 SEC11AP67812 179 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 WFDC2Q14508 124 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 KRTAP26-1Q6PEX3 210 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 TMEM141Q96I45 108 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 YPEL4Q96NS1 127 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BLQ99880 126 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 CHAC1Q9BUX1 264 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 ERG28Q9UKR5 140 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 TRAPPC1Q9Y5R8 145 aa2.37□□□□□ -2.03
NUP88-202ENST00000570937 DNAH11Q96DT5 4516 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BKO60814 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BJP06899 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BOP23527 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BBP33778 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 NDUFA6P56556 154 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BDP58876 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BCP62807 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST2H2BEQ16778 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.36□□□□□ -2.03
NUP88-202ENST00000570937 SDIM1Q6ZPB5 146 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 Q6ZSA8 131 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 SMIM20Q8N5G0 67 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BHQ93079 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 SCGB3A1Q96QR1 104 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BNQ99877 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HIST1H2BMQ99879 126 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 HSPB8Q9UJY1 196 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 ABCA13Q86UQ4 5058 aa2.36□□□□□ -2.03
NUP88-202ENST00000570937 IGHV3OR16-9A0A0B4J2B5 98 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 A0A1B0GX51 115 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 IGIPA6NJ69 53 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.35□□□□□ -2.03
NUP88-202ENST00000570937 SMR3BP02814 79 aaPredicted RBP2.35□□□□□ -2.03
NUP88-202ENST00000570937 FABP4P15090 132 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 RPS28P62857 69 aaKnown RBP2.35□□□□□ -2.03
NUP88-202ENST00000570937 HERVK_113P63121 156 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 COX6A2Q02221 97 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 HSD52Q0P140 79 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 SYCNQ0VAF6 134 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 PMVKQ15126 192 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 LINC01620Q4KN68 170 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 RNASE13Q5GAN3 156 aaKnown RBP2.35□□□□□ -2.03
NUP88-202ENST00000570937 Q5VSD8 79 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 Q6ZUT4 128 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 GTF2H5Q6ZYL4 71 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 ERASQ7Z444 233 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 C5orf38Q86SI9 138 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 C15orf56Q8N910 161 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 OR13C6PQ8NH95 151 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 CIRBP-AS1Q8TBR5 109 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 TOMM6Q96B49 74 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 CARD19Q96LW7 228 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 CAMK2N2Q96S95 79 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 TIMM17AQ99595 171 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 SPANXDQ9BXN6 97 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 UQCR10Q9UDW1 63 aa2.35□□□□□ -2.03
NUP88-202ENST00000570937 LRP1BQ9NZR2 4599 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 IGLV4-69A0A075B6H9 119 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 LOC107984640A0A0U1RRK4 108 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 LINC01546A6NGU7 62 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 H3BRM9 83 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 NDUFA1O15239 70 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 INAFM2P0DMQ5 153 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms