RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 A0A087WTM6 91 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 LINC00158P58513 81 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 CNBPP62633 177 aaKnown RBP4.2□□□□□ -1.74
VPS53-209ENST00000570771 SRSF9Q13242 221 aaKnown RBP eCLIP4.2□□□□□ -1.74
VPS53-209ENST00000570771 TAL2Q16559 108 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 C2orf82Q6UX34 121 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 UNQ6190/PRO20217Q6UXQ8 127 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 LINC00336Q6ZUF6 198 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 TTTY13Q9BZ97 58 aa4.2□□□□□ -1.74
VPS53-209ENST00000570771 ABCA13Q86UQ4 5058 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 IFITM1P13164 125 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 DDTP30046 118 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 Q6ZRU5 148 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 Q8N814 137 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 LINC00526Q96FQ7 95 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 HIST1H4GQ99525 98 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 SPANXDQ9BXN6 97 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 SPANXB1Q9NS25 103 aaPredicted RBP4.19□□□□□ -1.74
VPS53-209ENST00000570771 SPANXCQ9NY87 97 aa4.19□□□□□ -1.74
VPS53-209ENST00000570771 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.18□□□□□ -1.74
VPS53-209ENST00000570771 LOC107984640A0A0U1RRK4 108 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 TMEM238LA0A1B0GVL6 79 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 NDUFC2-KCTD14E9PQ53 114 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 M0R143 59 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 SLPIP03973 132 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 TLX1NBP0CAT3 122 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 SMIM13P0DJ93 91 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 PFN2P35080 140 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 HSD52Q0P140 79 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 LINC01620Q4KN68 170 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 C10orf25Q5T742 122 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 PPDPFQ9H3Y8 114 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 C6orf48Q9UBA6 75 aa4.18□□□□□ -1.74
VPS53-209ENST00000570771 PTTG1IPP53801 180 aa4.17□□□□□ -1.74
VPS53-209ENST00000570771 RPL24P83731 157 aaKnown RBP4.17□□□□□ -1.74
VPS53-209ENST00000570771 C2orf91Q6ZV80 131 aa4.17□□□□□ -1.74
VPS53-209ENST00000570771 MIR7-3HGQ8N6C7 128 aa4.17□□□□□ -1.74
VPS53-209ENST00000570771 LINC00474Q9P2X8 69 aa4.17□□□□□ -1.74
VPS53-209ENST00000570771 TP73-AS1Q9UF72 201 aa4.17□□□□□ -1.74
VPS53-209ENST00000570771 IGLV5-52A0A0A0MRZ9 124 aa4.16□□□□□ -1.74
VPS53-209ENST00000570771 A0A0U1RRA0 63 aa4.16□□□□□ -1.74
VPS53-209ENST00000570771 PCP4L1A6NKN8 68 aa4.16□□□□□ -1.74
VPS53-209ENST00000570771 CTAG1AP78358 180 aa4.16□□□□□ -1.74
VPS53-209ENST00000570771 RPL18AQ02543 176 aaKnown RBP4.16□□□□□ -1.74
VPS53-209ENST00000570771 C9orf116Q5BN46 136 aaPredicted RBP4.16□□□□□ -1.74
VPS53-209ENST00000570771 C9orf163Q8N9P6 203 aa4.16□□□□□ -1.74
VPS53-209ENST00000570771 LITAFQ99732 161 aa4.16□□□□□ -1.74
VPS53-209ENST00000570771 LOC107984156A0A0G2JMH3 177 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 PANO1I0J062 215 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 HAMPP81172 84 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 ARL17AQ8IVW1 177 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 CEND1Q8N111 149 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 LINC00308Q8TCZ7 52 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 SND1-IT1Q9HBX3 110 aa4.15□□□□□ -1.75
VPS53-209ENST00000570771 A6NDN8 102 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 C16orf90A8MZG2 172 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 KRTAP10-1P60331 282 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 GAGE2BQ13066 116 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 GAGE2EQ4V326 116 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 ADAMTSL4-AS1Q5T5F5 129 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 MUSTN1Q8IVN3 82 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 DAND5Q8N907 189 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 GAGE2DQ9UEU5 116 aa4.14□□□□□ -1.75
VPS53-209ENST00000570771 VPS13BQ7Z7G8 4022 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 NDUFC2O95298 119 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 GHRHP01286 108 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 HINT1P49773 126 aaPredicted RBP4.13□□□□□ -1.75
VPS53-209ENST00000570771 NPC2P61916 151 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 Q6ZRP5 223 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 FAM30AQ9NZY2 134 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 CBY1Q9Y3M2 126 aa4.13□□□□□ -1.75
VPS53-209ENST00000570771 PCLOQ9Y6V0 5065 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 A4D1N5 150 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 BVES-AS1Q5T3Y7 98 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 SDIM1Q6ZPB5 146 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 NKAPP1Q8N9T2 125 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 RAB37Q96AX2 223 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 DPH3Q96FX2 82 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 XAGE1AQ9HD64 81 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 PLA2G2DQ9UNK4 145 aa4.12□□□□□ -1.75
VPS53-209ENST00000570771 TRAV13-2A0A0B4J235 113 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 A0A0B4J2C4 111 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 IGKV2-24A0A0C4DH68 120 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 TRBV10-2A0A0K0K1G8 114 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 FXYD2P54710 66 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 BATFQ16520 125 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 SOSTDC1Q6X4U4 206 aa4.11□□□□□ -1.75
VPS53-209ENST00000570771 NHP2Q9NX24 153 aaKnown RBP4.11□□□□□ -1.75
VPS53-209ENST00000570771 PKHD1L1Q86WI1 4243 aa4.1□□□□□ -1.75
VPS53-209ENST00000570771 A0A096LNI7 61 aa4.1□□□□□ -1.75
VPS53-209ENST00000570771 M0R378 163 aa4.1□□□□□ -1.75
VPS53-209ENST00000570771 LBHQ53QV2 105 aaPredicted RBP4.1□□□□□ -1.75
VPS53-209ENST00000570771 S100A7L2Q5SY68 101 aa4.1□□□□□ -1.75
VPS53-209ENST00000570771 PRO1854Q9UHT4 67 aa4.1□□□□□ -1.75
VPS53-209ENST00000570771 IGLV5-37A0A075B6J1 123 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 A0A1B0GWB2 263 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 CHTF8P0CG12 524 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 VPREB1P12018 145 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 COL5A1-AS1Q5SY13 56 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 C9orf129Q5T035 196 aaKnown RBP4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms