RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 UBE2V1Q13404 147 aa6.68□□□□□ -1.34
CDH3-210ENST00000569117 SCGB1D4Q6XE38 83 aa6.68□□□□□ -1.34
CDH3-210ENST00000569117 C12orf57Q99622 126 aa6.68□□□□□ -1.34
CDH3-210ENST00000569117 LITAFQ99732 161 aa6.68□□□□□ -1.34
CDH3-210ENST00000569117 CIRBPQ14011 172 aaKnown RBP6.67□□□□□ -1.34
CDH3-210ENST00000569117 SLC25A34Q6PIV7 304 aa6.67□□□□□ -1.34
CDH3-210ENST00000569117 Q6ZSA8 131 aa6.67□□□□□ -1.34
CDH3-210ENST00000569117 C14orf144Q96I85 54 aa6.67□□□□□ -1.34
CDH3-210ENST00000569117 TMEM238C9JI98 176 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 LINC00158P58513 81 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 KRTAP10-1P60331 282 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 GAGE2BQ13066 116 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 KRTAP19-4Q3LI73 84 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 LINC00518Q8N0U6 118 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 MIR7-3HGQ8N6C7 128 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 SPACA4Q8TDM5 124 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 LINC00474Q9P2X8 69 aa6.66□□□□□ -1.34
CDH3-210ENST00000569117 IGKV2-24A0A0C4DH68 120 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 A0A0U1RRA0 63 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 CHTF8P0CG12 524 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 GAGE2EQ4V326 116 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 SPANXDQ9BXN6 97 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 SND1-IT1Q9HBX3 110 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 SPANXCQ9NY87 97 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 GAGE2DQ9UEU5 116 aa6.65□□□□□ -1.34
CDH3-210ENST00000569117 PANO1I0J062 215 aa6.64□□□□□ -1.35
CDH3-210ENST00000569117 C9orf129Q5T035 196 aaKnown RBP6.64□□□□□ -1.35
CDH3-210ENST00000569117 ADAMTSL4-AS1Q5T5F5 129 aa6.64□□□□□ -1.35
CDH3-210ENST00000569117 DAND5Q8N907 189 aa6.64□□□□□ -1.35
CDH3-210ENST00000569117 XAGE1AQ9HD64 81 aa6.64□□□□□ -1.35
CDH3-210ENST00000569117 SPANXB1Q9NS25 103 aaPredicted RBP6.64□□□□□ -1.35
CDH3-210ENST00000569117 HIGD1BQ9P298 99 aa6.64□□□□□ -1.35
CDH3-210ENST00000569117 UQCR10Q9UDW1 63 aa6.64□□□□□ -1.35
CDH3-210ENST00000569117 LOC107984156A0A0G2JMH3 177 aa6.63□□□□□ -1.35
CDH3-210ENST00000569117 C2orf91Q6ZV80 131 aa6.63□□□□□ -1.35
CDH3-210ENST00000569117 Q6ZVH6 145 aa6.63□□□□□ -1.35
CDH3-210ENST00000569117 ARL17AQ8IVW1 177 aa6.63□□□□□ -1.35
CDH3-210ENST00000569117 LRP1BQ9NZR2 4599 aa6.62□□□□□ -1.35
CDH3-210ENST00000569117 MIEN1Q9BRT3 115 aa6.62□□□□□ -1.35
CDH3-210ENST00000569117 PPDPFQ9H3Y8 114 aa6.62□□□□□ -1.35
CDH3-210ENST00000569117 DYNC1H1Q14204 4646 aaKnown RBP6.62□□□□□ -1.35
CDH3-210ENST00000569117 IFITM1P13164 125 aa6.61□□□□□ -1.35
CDH3-210ENST00000569117 LBHQ53QV2 105 aaPredicted RBP6.61□□□□□ -1.35
CDH3-210ENST00000569117 GAGE2AQ6NT46 116 aa6.61□□□□□ -1.35
CDH3-210ENST00000569117 SOSTDC1Q6X4U4 206 aa6.61□□□□□ -1.35
CDH3-210ENST00000569117 LINC00308Q8TCZ7 52 aa6.61□□□□□ -1.35
CDH3-210ENST00000569117 PRO1933Q9H354 126 aa6.61□□□□□ -1.35
CDH3-210ENST00000569117 DNAH8Q96JB1 4490 aa6.61□□□□□ -1.35
CDH3-210ENST00000569117 EPM2AB3EWF7 344 aa6.6□□□□□ -1.35
CDH3-210ENST00000569117 TSTD3H0UI37 97 aa6.6□□□□□ -1.35
CDH3-210ENST00000569117 COPS9Q8WXC6 57 aa6.6□□□□□ -1.35
CDH3-210ENST00000569117 PLAC8Q9NZF1 115 aa6.6□□□□□ -1.35
CDH3-210ENST00000569117 IGLV5-37A0A075B6J1 123 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 A0A087WYN8 130 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 A0A1W2PNN7 141 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 FAM168BA1KXE4 195 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 HNRNPA3P51991 378 aaKnown RBP6.59□□□□□ -1.35
CDH3-210ENST00000569117 NPC2P61916 151 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 SRSF9Q13242 221 aaKnown RBP eCLIP6.59□□□□□ -1.35
CDH3-210ENST00000569117 SCXQ7RTU7 201 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 KRTAP7-1Q8IUC3 87 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 Q8NDZ9 215 aa6.59□□□□□ -1.35
CDH3-210ENST00000569117 EPPK1P58107 5090 aaKnown RBP6.59□□□□□ -1.35
CDH3-210ENST00000569117 NDUFC2O95298 119 aa6.58□□□□□ -1.36
CDH3-210ENST00000569117 RPL24P83731 157 aaKnown RBP6.58□□□□□ -1.36
CDH3-210ENST00000569117 TAL2Q16559 108 aa6.58□□□□□ -1.36
CDH3-210ENST00000569117 FAM19A5Q7Z5A7 132 aaPredicted RBP6.58□□□□□ -1.36
CDH3-210ENST00000569117 CIRBP-AS1Q8TBR5 109 aa6.58□□□□□ -1.36
CDH3-210ENST00000569117 HIST1H4GQ99525 98 aa6.58□□□□□ -1.36
CDH3-210ENST00000569117 M0QXV9 152 aa6.57□□□□□ -1.36
CDH3-210ENST00000569117 MUSTN1Q8IVN3 82 aa6.57□□□□□ -1.36
CDH3-210ENST00000569117 HSD52Q0P140 79 aa6.56□□□□□ -1.36
CDH3-210ENST00000569117 NKAPP1Q8N9T2 125 aa6.56□□□□□ -1.36
CDH3-210ENST00000569117 DPH3Q96FX2 82 aa6.56□□□□□ -1.36
CDH3-210ENST00000569117 APOBP04114 4563 aaKnown RBP6.56□□□□□ -1.36
CDH3-210ENST00000569117 TRBV10-2A0A0K0K1G8 114 aa6.55□□□□□ -1.36
CDH3-210ENST00000569117 CDK2AP2O75956 126 aa6.55□□□□□ -1.36
CDH3-210ENST00000569117 XGP55808 180 aa6.55□□□□□ -1.36
CDH3-210ENST00000569117 HAMPP81172 84 aa6.55□□□□□ -1.36
CDH3-210ENST00000569117 NCR3O14931 201 aa6.54□□□□□ -1.36
CDH3-210ENST00000569117 SEC61BP60468 96 aaKnown RBP6.54□□□□□ -1.36
CDH3-210ENST00000569117 MRPL55Q7Z7F7 128 aaKnown RBP6.54□□□□□ -1.36
CDH3-210ENST00000569117 CEND1Q8N111 149 aa6.54□□□□□ -1.36
CDH3-210ENST00000569117 C22orf24Q9Y442 160 aa6.54□□□□□ -1.36
CDH3-210ENST00000569117 IGKV2-28A0A075B6P5 120 aa6.53□□□□□ -1.36
CDH3-210ENST00000569117 M0R378 163 aa6.53□□□□□ -1.36
CDH3-210ENST00000569117 IGKV2D-28P01615 120 aa6.53□□□□□ -1.36
CDH3-210ENST00000569117 PHF5AQ7RTV0 110 aaKnown RBP6.53□□□□□ -1.36
CDH3-210ENST00000569117 C7orf33Q8WU49 177 aa6.53□□□□□ -1.36
CDH3-210ENST00000569117 DDTP30046 118 aa6.52□□□□□ -1.37
CDH3-210ENST00000569117 FXYD2P54710 66 aa6.52□□□□□ -1.37
CDH3-210ENST00000569117 PRR3P79522 188 aaKnown RBP6.52□□□□□ -1.37
CDH3-210ENST00000569117 Q75L30 129 aa6.52□□□□□ -1.37
CDH3-210ENST00000569117 LINC00167Q96N53 147 aa6.51□□□□□ -1.37
CDH3-210ENST00000569117 M0R143 59 aa6.5□□□□□ -1.37
CDH3-210ENST00000569117 IGLV6-57P01721 117 aa6.5□□□□□ -1.37
CDH3-210ENST00000569117 CTAG1AP78358 180 aa6.5□□□□□ -1.37
CDH3-210ENST00000569117 LINC00337Q8N6G1 96 aa6.5□□□□□ -1.37
CDH3-210ENST00000569117 IGLV1-50A0A075B6I6 118 aa6.49□□□□□ -1.37
CDH3-210ENST00000569117 A0A0B4J2C4 111 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms