RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 A0A0U1RRA0 63 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 PANO1I0J062 215 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 CHTF8P0CG12 524 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 SMIM13P0DJ93 91 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 LINC00158P58513 81 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 GAGE2BQ13066 116 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 Q6ZSA8 131 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 BOD1L2Q8IYS8 172 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 C14orf144Q96I85 54 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 LITAFQ99732 161 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 TP73-AS1Q9UF72 201 aa5.39□□□□□ -1.55
SF3B3-212ENST00000568539 IGKV2-24A0A0C4DH68 120 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 DLEU1O43261 78 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 TIMM17BO60830 172 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 CIRBPQ14011 172 aaKnown RBP5.38□□□□□ -1.55
SF3B3-212ENST00000568539 GAGE2EQ4V326 116 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 ADAMTSL4-AS1Q5T5F5 129 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 XP32Q5T750 250 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 SCGB1D4Q6XE38 83 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 SPACA4Q8TDM5 124 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 LINC00474Q9P2X8 69 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 GAGE2DQ9UEU5 116 aa5.38□□□□□ -1.55
SF3B3-212ENST00000568539 C9orf129Q5T035 196 aaKnown RBP5.37□□□□□ -1.55
SF3B3-212ENST00000568539 MIR7-3HGQ8N6C7 128 aa5.37□□□□□ -1.55
SF3B3-212ENST00000568539 SND1-IT1Q9HBX3 110 aa5.37□□□□□ -1.55
SF3B3-212ENST00000568539 XAGE1AQ9HD64 81 aa5.37□□□□□ -1.55
SF3B3-212ENST00000568539 SLC25A34Q6PIV7 304 aa5.36□□□□□ -1.55
SF3B3-212ENST00000568539 LINC00518Q8N0U6 118 aa5.36□□□□□ -1.55
SF3B3-212ENST00000568539 DAND5Q8N907 189 aa5.36□□□□□ -1.55
SF3B3-212ENST00000568539 C12orf57Q99622 126 aa5.36□□□□□ -1.55
SF3B3-212ENST00000568539 APOBP04114 4563 aaKnown RBP5.35□□□□□ -1.55
SF3B3-212ENST00000568539 EPM2AB3EWF7 344 aa5.35□□□□□ -1.55
SF3B3-212ENST00000568539 TMEM238C9JI98 176 aa5.35□□□□□ -1.55
SF3B3-212ENST00000568539 SPANXDQ9BXN6 97 aa5.35□□□□□ -1.55
SF3B3-212ENST00000568539 SPANXCQ9NY87 97 aa5.35□□□□□ -1.55
SF3B3-212ENST00000568539 A0A087WYN8 130 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 LOC107984156A0A0G2JMH3 177 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 A0A1W2PNN7 141 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 FAM168BA1KXE4 195 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.34□□□□□ -1.55
SF3B3-212ENST00000568539 SOSTDC1Q6X4U4 206 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 C2orf91Q6ZV80 131 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 SCXQ7RTU7 201 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 KRTAP7-1Q8IUC3 87 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 ARL17AQ8IVW1 177 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 CIRBP-AS1Q8TBR5 109 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 DPH3Q96FX2 82 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 SPANXB1Q9NS25 103 aaPredicted RBP5.34□□□□□ -1.55
SF3B3-212ENST00000568539 PLAC8Q9NZF1 115 aa5.34□□□□□ -1.55
SF3B3-212ENST00000568539 DNAH5Q8TE73 4624 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 XGP55808 180 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 HAMPP81172 84 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 SERTAD4-AS1Q5TG53 156 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 Q6ZVH6 145 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 Q8NDZ9 215 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 LINC00308Q8TCZ7 52 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 HIGD1BQ9P298 99 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 UQCR10Q9UDW1 63 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 LRP1BQ9NZR2 4599 aa5.33□□□□□ -1.56
SF3B3-212ENST00000568539 IGLV5-37A0A075B6J1 123 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 CDK2AP2O75956 126 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 VPREB1P12018 145 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 NPC2P61916 151 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 FAM19A5Q7Z5A7 132 aaPredicted RBP5.32□□□□□ -1.56
SF3B3-212ENST00000568539 MIEN1Q9BRT3 115 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 KRTAP9-2Q9BYQ4 174 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 PRO1933Q9H354 126 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 PPDPFQ9H3Y8 114 aa5.32□□□□□ -1.56
SF3B3-212ENST00000568539 IFITM1P13164 125 aa5.31□□□□□ -1.56
SF3B3-212ENST00000568539 SRSF9Q13242 221 aaKnown RBP eCLIP5.31□□□□□ -1.56
SF3B3-212ENST00000568539 MUSTN1Q8IVN3 82 aa5.31□□□□□ -1.56
SF3B3-212ENST00000568539 KRTAP9-6A0A140TA67 174 aa5.3□□□□□ -1.56
SF3B3-212ENST00000568539 M0QXV9 152 aa5.3□□□□□ -1.56
SF3B3-212ENST00000568539 NDUFC2O95298 119 aa5.3□□□□□ -1.56
SF3B3-212ENST00000568539 RPL24P83731 157 aaKnown RBP5.3□□□□□ -1.56
SF3B3-212ENST00000568539 COPS9Q8WXC6 57 aa5.3□□□□□ -1.56
SF3B3-212ENST00000568539 HIST1H4GQ99525 98 aa5.3□□□□□ -1.56
SF3B3-212ENST00000568539 C22orf24Q9Y442 160 aa5.3□□□□□ -1.56
SF3B3-212ENST00000568539 MYCBP2O75592 4640 aa5.29□□□□□ -1.56
SF3B3-212ENST00000568539 KRTAP23-1A1A580 65 aa5.29□□□□□ -1.56
SF3B3-212ENST00000568539 PRR3P79522 188 aaKnown RBP5.29□□□□□ -1.56
SF3B3-212ENST00000568539 TAL2Q16559 108 aa5.29□□□□□ -1.56
SF3B3-212ENST00000568539 PHF5AQ7RTV0 110 aaKnown RBP5.29□□□□□ -1.56
SF3B3-212ENST00000568539 NKAPP1Q8N9T2 125 aa5.29□□□□□ -1.56
SF3B3-212ENST00000568539 CBY1Q9Y3M2 126 aa5.29□□□□□ -1.56
SF3B3-212ENST00000568539 TSTD3H0UI37 97 aa5.28□□□□□ -1.56
SF3B3-212ENST00000568539 NCR3O14931 201 aa5.28□□□□□ -1.56
SF3B3-212ENST00000568539 HNRNPA3P51991 378 aaKnown RBP5.28□□□□□ -1.56
SF3B3-212ENST00000568539 MRPL55Q7Z7F7 128 aaKnown RBP5.28□□□□□ -1.56
SF3B3-212ENST00000568539 C7orf33Q8WU49 177 aa5.28□□□□□ -1.56
SF3B3-212ENST00000568539 DMBT1Q9UGM3 2413 aaPredicted RBP5.27□□□□□ -1.57
SF3B3-212ENST00000568539 IGKV2-28A0A075B6P5 120 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 TRBV10-2A0A0K0K1G8 114 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 GAGE10A6NGK3 116 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 M0R378 163 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 IGKV2D-28P01615 120 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 HSD52Q0P140 79 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 KRTAP19-4Q3LI73 84 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 LBHQ53QV2 105 aaPredicted RBP5.27□□□□□ -1.57
SF3B3-212ENST00000568539 CEND1Q8N111 149 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms