RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 IGKV2D-26A0A0A0MRZ7 120 aa12.1□□□□□ -0.47
CLN3-225ENST00000566824 MYMXA0A1B0GTQ4 84 aa12.1□□□□□ -0.47
CLN3-225ENST00000566824 C22orf24Q9Y442 160 aa12.1□□□□□ -0.47
CLN3-225ENST00000566824 LGALS3P17931 250 aaKnown RBP12.09□□□□□ -0.47
CLN3-225ENST00000566824 PSORS1C2Q9UIG4 136 aa12.09□□□□□ -0.47
CLN3-225ENST00000566824 HERV-K104P63124 156 aa12.08□□□□□ -0.48
CLN3-225ENST00000566824 MEIG1Q5JSS6 88 aa12.08□□□□□ -0.48
CLN3-225ENST00000566824 TTTY13Q9BZ97 58 aa12.08□□□□□ -0.48
CLN3-225ENST00000566824 PLA2G2DQ9UNK4 145 aa12.07□□□□□ -0.48
CLN3-225ENST00000566824 C20orf202A1L168 122 aa12.06□□□□□ -0.48
CLN3-225ENST00000566824 ANKRD39Q53RE8 183 aa12.06□□□□□ -0.48
CLN3-225ENST00000566824 MIR7-3HGQ8N6C7 128 aa12.05□□□□□ -0.48
CLN3-225ENST00000566824 DAND5Q8N907 189 aa12.05□□□□□ -0.48
CLN3-225ENST00000566824 LRP1Q07954 4544 aaKnown RBP12.04□□□□□ -0.48
CLN3-225ENST00000566824 IGLV5-37A0A075B6J1 123 aa12.04□□□□□ -0.48
CLN3-225ENST00000566824 VPREB1P12018 145 aa12.04□□□□□ -0.48
CLN3-225ENST00000566824 NMUP48645 174 aa12.04□□□□□ -0.48
CLN3-225ENST00000566824 GAGE10A6NGK3 116 aa12.03□□□□□ -0.48
CLN3-225ENST00000566824 UBE2BP63146 152 aa12.03□□□□□ -0.48
CLN3-225ENST00000566824 LINC00167Q96N53 147 aa12.03□□□□□ -0.48
CLN3-225ENST00000566824 FAT3Q8TDW7 4589 aa12.02□□□□□ -0.49
CLN3-225ENST00000566824 A0A0J9YXY3 114 aa12.02□□□□□ -0.49
CLN3-225ENST00000566824 MRPL55Q7Z7F7 128 aaKnown RBP12.02□□□□□ -0.49
CLN3-225ENST00000566824 C1orf137Q5JT78 98 aa12.01□□□□□ -0.49
CLN3-225ENST00000566824 TP73-AS1Q9UF72 201 aa12.01□□□□□ -0.49
CLN3-225ENST00000566824 RPL37AP8A6NKH3 93 aa12□□□□□ -0.49
CLN3-225ENST00000566824 ADAMTSL4-AS1Q5T5F5 129 aa12□□□□□ -0.49
CLN3-225ENST00000566824 LBHQ53QV2 105 aaPredicted RBP11.99□□□□□ -0.49
CLN3-225ENST00000566824 EIF4EBP3O60516 100 aaPredicted RBP11.98□□□□□ -0.49
CLN3-225ENST00000566824 SRSF9Q13242 221 aaKnown RBP eCLIP11.98□□□□□ -0.49
CLN3-225ENST00000566824 NKAPP1Q8N9T2 125 aa11.98□□□□□ -0.49
CLN3-225ENST00000566824 ZNF815PA8K554 130 aa11.97□□□□□ -0.49
CLN3-225ENST00000566824 LINC00587B1AMM8 73 aa11.97□□□□□ -0.49
CLN3-225ENST00000566824 LITAFQ99732 161 aa11.97□□□□□ -0.49
CLN3-225ENST00000566824 TMA7Q9Y2S6 64 aaKnown RBP11.97□□□□□ -0.49
CLN3-225ENST00000566824 BOD1L2Q8IYS8 172 aa11.96□□□□□ -0.49
CLN3-225ENST00000566824 RPL24P83731 157 aaKnown RBP11.95□□□□□ -0.5
CLN3-225ENST00000566824 SOSTDC1Q6X4U4 206 aa11.95□□□□□ -0.5
CLN3-225ENST00000566824 PCP2Q8IVA1 136 aa11.95□□□□□ -0.5
CLN3-225ENST00000566824 IGKV2-28A0A075B6P5 120 aa11.94□□□□□ -0.5
CLN3-225ENST00000566824 SCGB1D1O95968 90 aa11.94□□□□□ -0.5
CLN3-225ENST00000566824 IGKV2D-28P01615 120 aa11.94□□□□□ -0.5
CLN3-225ENST00000566824 IGLV7-43P04211 117 aa11.94□□□□□ -0.5
CLN3-225ENST00000566824 NPC2P61916 151 aa11.94□□□□□ -0.5
CLN3-225ENST00000566824 LOC107984156A0A0G2JMH3 177 aa11.92□□□□□ -0.5
CLN3-225ENST00000566824 NCR3O14931 201 aa11.92□□□□□ -0.5
CLN3-225ENST00000566824 AKR1D1P51857 326 aa11.92□□□□□ -0.5
CLN3-225ENST00000566824 ARL17AQ8IVW1 177 aa11.92□□□□□ -0.5
CLN3-225ENST00000566824 IGLV1-50A0A075B6I6 118 aa11.91□□□□□ -0.5
CLN3-225ENST00000566824 DMBT1Q9UGM3 2413 aaPredicted RBP11.91□□□□□ -0.5
CLN3-225ENST00000566824 SPINK6Q6UWN8 80 aa11.9□□□□□ -0.5
CLN3-225ENST00000566824 TMEM238C9JI98 176 aa11.89□□□□□ -0.51
CLN3-225ENST00000566824 TIMM17BO60830 172 aa11.89□□□□□ -0.51
CLN3-225ENST00000566824 KRTAP29-1A8MX34 341 aaPredicted RBP11.88□□□□□ -0.51
CLN3-225ENST00000566824 M0R378 163 aa11.88□□□□□ -0.51
CLN3-225ENST00000566824 BCE1O60756 84 aa11.86□□□□□ -0.51
CLN3-225ENST00000566824 LINC00308Q8TCZ7 52 aa11.86□□□□□ -0.51
CLN3-225ENST00000566824 SCGB1D4Q6XE38 83 aa11.85□□□□□ -0.51
CLN3-225ENST00000566824 HSBP1L1C9JCN9 74 aa11.84□□□□□ -0.51
CLN3-225ENST00000566824 MIEN1Q9BRT3 115 aa11.84□□□□□ -0.51
CLN3-225ENST00000566824 TMEM126AQ9H061 195 aa11.84□□□□□ -0.51
CLN3-225ENST00000566824 TRBV10-3A0A0K0K1G6 114 aa11.83□□□□□ -0.52
CLN3-225ENST00000566824 OXTP01178 125 aa11.83□□□□□ -0.52
CLN3-225ENST00000566824 JOSD1Q15040 202 aaPredicted RBP11.83□□□□□ -0.52
CLN3-225ENST00000566824 KRTAP13-1Q8IUC0 172 aa11.83□□□□□ -0.52
CLN3-225ENST00000566824 ZNF861PO60384 105 aa11.82□□□□□ -0.52
CLN3-225ENST00000566824 MT1HL1P0DM35 61 aa11.82□□□□□ -0.52
CLN3-225ENST00000566824 REG3GQ6UW15 175 aa11.82□□□□□ -0.52
CLN3-225ENST00000566824 HERC1Q15751 4861 aa11.81□□□□□ -0.52
CLN3-225ENST00000566824 H0Y9J4 135 aa11.81□□□□□ -0.52
CLN3-225ENST00000566824 NDUFC2O95298 119 aa11.81□□□□□ -0.52
CLN3-225ENST00000566824 SPANXDQ9BXN6 97 aa11.81□□□□□ -0.52
CLN3-225ENST00000566824 SPANXCQ9NY87 97 aa11.81□□□□□ -0.52
CLN3-225ENST00000566824 J3QL48 77 aa11.8□□□□□ -0.52
CLN3-225ENST00000566824 DIRC1Q969H9 104 aa11.8□□□□□ -0.52
CLN3-225ENST00000566824 SPANXB1Q9NS25 103 aaPredicted RBP11.8□□□□□ -0.52
CLN3-225ENST00000566824 TRBV10-2A0A0K0K1G8 114 aa11.79□□□□□ -0.52
CLN3-225ENST00000566824 PRLHP81277 87 aa11.79□□□□□ -0.52
CLN3-225ENST00000566824 TNXBP22105 4242 aa11.78□□□□□ -0.52
CLN3-225ENST00000566824 KCNQ1DNQ9H478 68 aa11.78□□□□□ -0.52
CLN3-225ENST00000566824 DDTP30046 118 aa11.77□□□□□ -0.53
CLN3-225ENST00000566824 PYY3Q5JQD4 70 aa11.77□□□□□ -0.53
CLN3-225ENST00000566824 FAM19A1Q7Z5A9 133 aa11.77□□□□□ -0.53
CLN3-225ENST00000566824 LINC01600Q96MT4 127 aa11.77□□□□□ -0.53
CLN3-225ENST00000566824 PAM16Q9Y3D7 125 aa11.77□□□□□ -0.53
CLN3-225ENST00000566824 PRYO14603 147 aa11.76□□□□□ -0.53
CLN3-225ENST00000566824 IGLV6-57P01721 117 aa11.76□□□□□ -0.53
CLN3-225ENST00000566824 KRTAP1-4P0C5Y4 121 aa11.76□□□□□ -0.53
CLN3-225ENST00000566824 RPL28P46779 137 aaKnown RBP11.76□□□□□ -0.53
CLN3-225ENST00000566824 UBE2AP49459 152 aa11.76□□□□□ -0.53
CLN3-225ENST00000566824 MUSTN1Q8IVN3 82 aa11.76□□□□□ -0.53
CLN3-225ENST00000566824 COX8AP10176 69 aa11.75□□□□□ -0.53
CLN3-225ENST00000566824 SPRR1AP35321 89 aa11.75□□□□□ -0.53
CLN3-225ENST00000566824 SPATA45Q537H7 98 aa11.75□□□□□ -0.53
CLN3-225ENST00000566824 KRTAP4-16G5E9R7 235 aaPredicted RBP11.74□□□□□ -0.53
CLN3-225ENST00000566824 C14orf144Q96I85 54 aa11.74□□□□□ -0.53
CLN3-225ENST00000566824 VAMP8Q9BV40 100 aa11.73□□□□□ -0.53
CLN3-225ENST00000566824 S100A7L2Q5SY68 101 aa11.72□□□□□ -0.53
CLN3-225ENST00000566824 LINC00337Q8N6G1 96 aa11.72□□□□□ -0.53
CLN3-225ENST00000566824 IFITM1P13164 125 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms