RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 TMEM223A0PJW6 202 aa13.24□□□□□ -0.29
CLN3-215ENST00000565236 FAM19A1Q7Z5A9 133 aa13.24□□□□□ -0.29
CLN3-215ENST00000565236 TMEM126AQ9H061 195 aa13.24□□□□□ -0.29
CLN3-215ENST00000565236 TMEM238C9JI98 176 aa13.23□□□□□ -0.29
CLN3-215ENST00000565236 PRLHP81277 87 aa13.23□□□□□ -0.29
CLN3-215ENST00000565236 Q8NDZ9 215 aa13.22□□□□□ -0.29
CLN3-215ENST00000565236 A0A0U1RRA0 63 aa13.21□□□□□ -0.29
CLN3-215ENST00000565236 M0R378 163 aa13.2□□□□□ -0.3
CLN3-215ENST00000565236 HSBP1O75506 76 aa13.2□□□□□ -0.3
CLN3-215ENST00000565236 FAM229BQ4G0N7 80 aa13.2□□□□□ -0.3
CLN3-215ENST00000565236 ATP6V1G1O75348 118 aa13.19□□□□□ -0.3
CLN3-215ENST00000565236 FAM19A2Q8N3H0 131 aa13.19□□□□□ -0.3
CLN3-215ENST00000565236 KRTAP13-2Q52LG2 175 aa13.18□□□□□ -0.3
CLN3-215ENST00000565236 CBLN2Q8IUK8 224 aa13.18□□□□□ -0.3
CLN3-215ENST00000565236 IGKV2D-26A0A0A0MRZ7 120 aa13.16□□□□□ -0.3
CLN3-215ENST00000565236 SMIM13P0DJ93 91 aa13.16□□□□□ -0.3
CLN3-215ENST00000565236 MEIG1Q5JSS6 88 aa13.16□□□□□ -0.3
CLN3-215ENST00000565236 H0Y8G0 127 aa13.13□□□□□ -0.31
CLN3-215ENST00000565236 TRGC2P03986 189 aa13.13□□□□□ -0.31
CLN3-215ENST00000565236 HERV-K104P63124 156 aa13.13□□□□□ -0.31
CLN3-215ENST00000565236 PLEKHB2Q96CS7 222 aa13.13□□□□□ -0.31
CLN3-215ENST00000565236 LINC00587B1AMM8 73 aa13.12□□□□□ -0.31
CLN3-215ENST00000565236 BOD1L2Q8IYS8 172 aa13.12□□□□□ -0.31
CLN3-215ENST00000565236 LINC00304Q8N9R0 145 aa13.12□□□□□ -0.31
CLN3-215ENST00000565236 HIGD2AQ9BW72 106 aa13.12□□□□□ -0.31
CLN3-215ENST00000565236 MIR7-3HGQ8N6C7 128 aa13.11□□□□□ -0.31
CLN3-215ENST00000565236 NDUFA12Q9UI09 145 aa13.11□□□□□ -0.31
CLN3-215ENST00000565236 MYMXA0A1B0GTQ4 84 aa13.1□□□□□ -0.31
CLN3-215ENST00000565236 LEPROTL1O95214 131 aa13.1□□□□□ -0.31
CLN3-215ENST00000565236 SERF1AO75920 110 aa13.08□□□□□ -0.32
CLN3-215ENST00000565236 MAP1LC3CQ9BXW4 147 aa13.08□□□□□ -0.32
CLN3-215ENST00000565236 NCR3O14931 201 aa13.06□□□□□ -0.32
CLN3-215ENST00000565236 PRYO14603 147 aa13.05□□□□□ -0.32
CLN3-215ENST00000565236 LEPROTO15243 131 aa13.04□□□□□ -0.32
CLN3-215ENST00000565236 PLNP26678 52 aa13.04□□□□□ -0.32
CLN3-215ENST00000565236 LINC00310P59036 64 aa13.04□□□□□ -0.32
CLN3-215ENST00000565236 HSPB8Q9UJY1 196 aa13.04□□□□□ -0.32
CLN3-215ENST00000565236 FABP4P15090 132 aa13.03□□□□□ -0.32
CLN3-215ENST00000565236 C3orf22Q8N5N4 141 aa13.03□□□□□ -0.32
CLN3-215ENST00000565236 RETNLBQ9BQ08 111 aa13.03□□□□□ -0.32
CLN3-215ENST00000565236 SPRR4Q96PI1 79 aa13.02□□□□□ -0.33
CLN3-215ENST00000565236 KCNQ1DNQ9H478 68 aa13.02□□□□□ -0.33
CLN3-215ENST00000565236 ZNF706Q9Y5V0 76 aaPredicted RBP13.02□□□□□ -0.33
CLN3-215ENST00000565236 DPM2O94777 84 aa13.01□□□□□ -0.33
CLN3-215ENST00000565236 TSPEAR-AS2P59090 65 aa13.01□□□□□ -0.33
CLN3-215ENST00000565236 CTAG1AP78358 180 aa13.01□□□□□ -0.33
CLN3-215ENST00000565236 LINC00337Q8N6G1 96 aa13.01□□□□□ -0.33
CLN3-215ENST00000565236 ETDCA0A1B0GVM5 59 aa13□□□□□ -0.33
CLN3-215ENST00000565236 HERVK_113P61574 105 aa13□□□□□ -0.33
CLN3-215ENST00000565236 S100A12P80511 92 aa13□□□□□ -0.33
CLN3-215ENST00000565236 SLC7A5P1Q8MH63 180 aa13□□□□□ -0.33
CLN3-215ENST00000565236 TRBV10-3A0A0K0K1G6 114 aa12.99□□□□□ -0.33
CLN3-215ENST00000565236 J3QQQ9 107 aa12.99□□□□□ -0.33
CLN3-215ENST00000565236 SPRR1AP35321 89 aa12.99□□□□□ -0.33
CLN3-215ENST00000565236 DAND5Q8N907 189 aa12.99□□□□□ -0.33
CLN3-215ENST00000565236 PMCHL2Q9BQD1 86 aa12.98□□□□□ -0.33
CLN3-215ENST00000565236 MUC2Q02817 5179 aa12.97□□□□□ -0.33
CLN3-215ENST00000565236 COLCA2A8K830 154 aa12.97□□□□□ -0.33
CLN3-215ENST00000565236 IGKCP01834 107 aa12.97□□□□□ -0.33
CLN3-215ENST00000565236 SMCR5Q8TEV8 140 aa12.97□□□□□ -0.33
CLN3-215ENST00000565236 LOC107984156A0A0G2JMH3 177 aa12.96□□□□□ -0.33
CLN3-215ENST00000565236 LGALS3P17931 250 aaKnown RBP12.96□□□□□ -0.33
CLN3-215ENST00000565236 NMUP48645 174 aa12.96□□□□□ -0.33
CLN3-215ENST00000565236 ARL17AQ8IVW1 177 aa12.96□□□□□ -0.33
CLN3-215ENST00000565236 KRTAP4-16G5E9R7 235 aaPredicted RBP12.95□□□□□ -0.34
CLN3-215ENST00000565236 SPAG11AQ6PDA7 123 aa12.95□□□□□ -0.34
CLN3-215ENST00000565236 MIEN1Q9BRT3 115 aa12.94□□□□□ -0.34
CLN3-215ENST00000565236 IGLV7-46A0A075B6I9 117 aa12.93□□□□□ -0.34
CLN3-215ENST00000565236 TRBV10-2A0A0K0K1G8 114 aa12.93□□□□□ -0.34
CLN3-215ENST00000565236 DDTP30046 118 aa12.93□□□□□ -0.34
CLN3-215ENST00000565236 C4orf48Q5BLP8 95 aa12.93□□□□□ -0.34
CLN3-215ENST00000565236 PPDPFQ9H3Y8 114 aa12.92□□□□□ -0.34
CLN3-215ENST00000565236 B5MCH6 92 aa12.9□□□□□ -0.34
CLN3-215ENST00000565236 CDIP1Q9H305 208 aa12.9□□□□□ -0.34
CLN3-215ENST00000565236 SPANXB1Q9NS25 103 aaPredicted RBP12.9□□□□□ -0.34
CLN3-215ENST00000565236 TPRXLQ17RH7 258 aa12.89□□□□□ -0.35
CLN3-215ENST00000565236 S100A7L2Q5SY68 101 aa12.88□□□□□ -0.35
CLN3-215ENST00000565236 A0A0U1RQV1 116 aa12.87□□□□□ -0.35
CLN3-215ENST00000565236 NDUFC2O95298 119 aa12.87□□□□□ -0.35
CLN3-215ENST00000565236 GAGE2AQ6NT46 116 aa12.87□□□□□ -0.35
CLN3-215ENST00000565236 Q8NBF4 154 aa12.87□□□□□ -0.35
CLN3-215ENST00000565236 LINC00483Q53H64 154 aa12.85□□□□□ -0.35
CLN3-215ENST00000565236 A0A0J9YXY3 114 aa12.84□□□□□ -0.35
CLN3-215ENST00000565236 E9PLD3 99 aa12.84□□□□□ -0.35
CLN3-215ENST00000565236 ERC2-IT1O76042 136 aa12.84□□□□□ -0.35
CLN3-215ENST00000565236 IGLV6-57P01721 117 aa12.83□□□□□ -0.36
CLN3-215ENST00000565236 NPC2P61916 151 aa12.83□□□□□ -0.36
CLN3-215ENST00000565236 ADAMTSL4-AS1Q5T5F5 129 aa12.83□□□□□ -0.36
CLN3-215ENST00000565236 Q6ZRX8 168 aa12.83□□□□□ -0.36
CLN3-215ENST00000565236 Q9BRP9 147 aa12.82□□□□□ -0.36
CLN3-215ENST00000565236 SYS1-DBNDD2H3BUS1 97 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BKO60814 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BJP06899 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BOP23527 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BBP33778 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BDP58876 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BCP62807 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST2H2BEQ16778 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.81□□□□□ -0.36
CLN3-215ENST00000565236 SOSTDC1Q6X4U4 206 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms