RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-208	ENST00000563911	TAL2	Q16559	108 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	KRTAP19-2	Q3LHN2	52 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	FER1L6-AS1	Q8NA97	138 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	DIRC1	Q969H9	104 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	CARD19	Q96LW7	228 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	MAP1LC3A	Q9H492	121 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	NAT8	Q9UHE5	227 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	PRO0628	Q9UI54	55 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	TNFSF18	Q9UNG2	199 aa		3.22	□□□□□ -1.89
HERPUD1-208	ENST00000563911	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	IGKV2-29	A2NJV5	120 aa	Predicted RBP	3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	INMT-MINDY4	F8WBC2	141 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911		J3KT08	172 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	CXorf1	O96002	111 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	OR5AL1	P0C617	328 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	XCL1	P47992	114 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	SMAGP	Q0VAQ4	97 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	PMVK	Q15126	192 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	NUP35	Q8NFH5	326 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	LINC00474	Q9P2X8	69 aa		3.21	□□□□□ -1.9
HERPUD1-208	ENST00000563911	LOC107984640	A0A0U1RRK4	108 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	LINC00959	A0A1B0GUT2	108 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	COLCA2	A8K830	154 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	MGP	P08493	103 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	PFN2	P35080	140 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	C10orf91	Q5T1B1	145 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	MIEN1	Q9BRT3	115 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	ANAPC13	Q9BS18	74 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	SEC11C	Q9BY50	192 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	TMEM167B	Q9NRX6	74 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	LAMTOR2	Q9Y2Q5	125 aa		3.2	□□□□□ -1.9
HERPUD1-208	ENST00000563911	IGHV3OR16-9	A0A0B4J2B5	98 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	IGHV1-58	A0A0C4DH39	117 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911		A0A1B0GX51	115 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	NDUFC2-KCTD14	E9PQ53	114 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	IGLC6	P0CF74	106 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	FGF6	P10767	208 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	RAB5A	P20339	215 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	NTF3	P20783	257 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	FOXA3	P55318	350 aa	Predicted RBP	3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	KRTAP13-3	Q3SY46	172 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	KRTAP13-2	Q52LG2	175 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	SPANXN1	Q5VSR9	72 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	RASL11A	Q6T310	242 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	HIST3H2BB	Q8N257	126 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	GATD1	Q8NB37	220 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	OR5A1	Q8NGJ0	315 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	RPL39L	Q96EH5	51 aa	Known RBP	3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911	NAT8B	Q9UHF3	227 aa		3.19	□□□□□ -1.9
HERPUD1-208	ENST00000563911		G3V3Q6	166 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	CXCL1	P09341	107 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	MOBP	Q13875	183 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	BATF	Q16520	125 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	C1orf195	Q5TG92	126 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	MBD3L1	Q8WWY6	194 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	FMC1	Q96HJ9	113 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	SSPO	A2VEC9	5147 aa		3.18	□□□□□ -1.9
HERPUD1-208	ENST00000563911	TRAV1-1	A0A0B4J248	108 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	UBE2L6	O14933	153 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	APOM	O95445	188 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	FABP4	P15090	132 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	NDUFA6	P56556	154 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	MT1H	P80294	61 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	RPL18A	Q02543	176 aa	Known RBP	3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	CD164	Q04900	197 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	HSD52	Q0P140	79 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	SS18	Q15532	418 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	TPRXL	Q17RH7	258 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	RPL7L1	Q6DKI1	246 aa	Known RBP	3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	KRTAP5-1	Q6L8H4	278 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	AP1S3	Q96PC3	154 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	MED28	Q9H204	178 aa		3.17	□□□□□ -1.9
HERPUD1-208	ENST00000563911	USH2A	O75445	5202 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	CTXND1	A0A1B0GTU2	59 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	UBE2D1	P51668	147 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	UBE2G1	P62253	170 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	SERF2	P84101	59 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	ALKAL2	Q6UX46	152 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	C5orf38	Q86SI9	138 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	C8orf17	Q9NRJ1	99 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	CDC42SE2	Q9NRR3	84 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	CYSLTR1	Q9Y271	337 aa		3.16	□□□□□ -1.9
HERPUD1-208	ENST00000563911	RPS28	P62857	69 aa	Known RBP	3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	C4orf26	Q17RF5	130 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	RNASE13	Q5GAN3	156 aa	Known RBP	3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	AMMECR1L	Q6DCA0	310 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	LYZL1	Q6UWQ5	148 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	FAM19A1	Q7Z5A9	133 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	BAGE2	Q86Y30	109 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	HIST1H2BL	Q99880	126 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	VAMP8	Q9BV40	100 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	RNASE7	Q9H1E1	156 aa	Known RBP	3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	C6orf48	Q9UBA6	75 aa		3.15	□□□□□ -1.91
HERPUD1-208	ENST00000563911	C19orf71	A6NCJ1	209 aa		3.14	□□□□□ -1.91
HERPUD1-208	ENST00000563911	ASB16-AS1	Q495Z4	193 aa		3.14	□□□□□ -1.91
HERPUD1-208	ENST00000563911	UNQ6190/PRO20217	Q6UXQ8	127 aa		3.14	□□□□□ -1.91
HERPUD1-208	ENST00000563911	FLG	P20930	4061 aa	Predicted RBP	3.14	□□□□□ -1.91
HERPUD1-208	ENST00000563911		A0A1B0GV50	99 aa		3.13	□□□□□ -1.91
HERPUD1-208	ENST00000563911	SDHAF1	A6NFY7	115 aa		3.13	□□□□□ -1.91

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