RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 KIAA0087Q14695 138 aa5.74□□□□□ -1.49
HERC1-209ENST00000560519 TMEM170BQ5T4T1 132 aa5.74□□□□□ -1.49
HERC1-209ENST00000560519 C11orf86A6NJI1 115 aa5.73□□□□□ -1.49
HERC1-209ENST00000560519 S100A6P06703 90 aa5.73□□□□□ -1.49
HERC1-209ENST00000560519 SPINK8P0C7L1 97 aa5.73□□□□□ -1.49
HERC1-209ENST00000560519 PLNP26678 52 aa5.73□□□□□ -1.49
HERC1-209ENST00000560519 COX7B2Q8TF08 81 aa5.73□□□□□ -1.49
HERC1-209ENST00000560519 RPL28P46779 137 aaKnown RBP5.72□□□□□ -1.49
HERC1-209ENST00000560519 LBHQ53QV2 105 aaPredicted RBP5.72□□□□□ -1.49
HERC1-209ENST00000560519 SFTA2Q6UW10 78 aa5.72□□□□□ -1.49
HERC1-209ENST00000560519 IGLV5-39A0A0G2JS06 123 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 SYS1-DBNDD2H3BUS1 97 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 DPM2O94777 84 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 S100A2P29034 98 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 C9orf129Q5T035 196 aaKnown RBP5.71□□□□□ -1.5
HERC1-209ENST00000560519 PET117Q6UWS5 81 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 KRTAP7-1Q8IUC3 87 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 TYMSOSQ8TAI1 123 aa5.71□□□□□ -1.5
HERC1-209ENST00000560519 TMEM223A0PJW6 202 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 TSPAN13O95857 204 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 IGKCP01834 107 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 CRYGAP11844 174 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 AKR1D1P51857 326 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 HERVK_113P61574 105 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 C2orf82Q6UX34 121 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 TP73-AS1Q9UF72 201 aa5.7□□□□□ -1.5
HERC1-209ENST00000560519 C20orf202A1L168 122 aa5.69□□□□□ -1.5
HERC1-209ENST00000560519 KRTDAPP60985 99 aa5.69□□□□□ -1.5
HERC1-209ENST00000560519 LCE2AQ5TA79 106 aaPredicted RBP5.69□□□□□ -1.5
HERC1-209ENST00000560519 BCE1O60756 84 aa5.68□□□□□ -1.5
HERC1-209ENST00000560519 C3orf79P0CE67 100 aa5.68□□□□□ -1.5
HERC1-209ENST00000560519 LINC01545Q5VT33 79 aa5.68□□□□□ -1.5
HERC1-209ENST00000560519 MRPL55Q7Z7F7 128 aaKnown RBP5.68□□□□□ -1.5
HERC1-209ENST00000560519 HIST3H2BBQ8N257 126 aa5.68□□□□□ -1.5
HERC1-209ENST00000560519 PMCHL2Q9BQD1 86 aa5.68□□□□□ -1.5
HERC1-209ENST00000560519 C22orf24Q9Y442 160 aa5.68□□□□□ -1.5
HERC1-209ENST00000560519 A0A087X002 238 aa5.67□□□□□ -1.5
HERC1-209ENST00000560519 KRTAP9-6A0A140TA67 174 aa5.67□□□□□ -1.5
HERC1-209ENST00000560519 TPRXLQ17RH7 258 aa5.67□□□□□ -1.5
HERC1-209ENST00000560519 PLEKHB2Q96CS7 222 aa5.67□□□□□ -1.5
HERC1-209ENST00000560519 SNRPEP62304 92 aaKnown RBP5.66□□□□□ -1.5
HERC1-209ENST00000560519 CTAG1AP78358 180 aa5.66□□□□□ -1.5
HERC1-209ENST00000560519 HIST1H2BLQ99880 126 aa5.66□□□□□ -1.5
HERC1-209ENST00000560519 CDIP1Q9H305 208 aa5.66□□□□□ -1.5
HERC1-209ENST00000560519 LINC00587B1AMM8 73 aa5.65□□□□□ -1.5
HERC1-209ENST00000560519 LEPROTO15243 131 aa5.65□□□□□ -1.5
HERC1-209ENST00000560519 HERV-K104P63124 156 aa5.65□□□□□ -1.5
HERC1-209ENST00000560519 COX17Q14061 63 aa5.65□□□□□ -1.5
HERC1-209ENST00000560519 XAGE1AQ9HD64 81 aa5.65□□□□□ -1.5
HERC1-209ENST00000560519 MYMXA0A1B0GTQ4 84 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 C5orf52A6NGY3 159 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 LGALS3P17931 250 aaKnown RBP5.64□□□□□ -1.51
HERC1-209ENST00000560519 NMUP48645 174 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 FAM229BQ4G0N7 80 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 LINC00304Q8N9R0 145 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 ZNF625Q96I27 306 aaPredicted RBP5.64□□□□□ -1.51
HERC1-209ENST00000560519 NDUFA12Q9UI09 145 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 ERG28Q9UKR5 140 aa5.64□□□□□ -1.51
HERC1-209ENST00000560519 E9PLD3 99 aa5.63□□□□□ -1.51
HERC1-209ENST00000560519 J3QQQ9 107 aa5.63□□□□□ -1.51
HERC1-209ENST00000560519 UBE2AP49459 152 aa5.63□□□□□ -1.51
HERC1-209ENST00000560519 IGKV2D-26A0A0A0MRZ7 120 aa5.62□□□□□ -1.51
HERC1-209ENST00000560519 PFN2P35080 140 aa5.62□□□□□ -1.51
HERC1-209ENST00000560519 MEIG1Q5JSS6 88 aa5.62□□□□□ -1.51
HERC1-209ENST00000560519 NKAPP1Q8N9T2 125 aa5.62□□□□□ -1.51
HERC1-209ENST00000560519 LINC00158P58513 81 aa5.61□□□□□ -1.51
HERC1-209ENST00000560519 RETNLBQ9BQ08 111 aa5.61□□□□□ -1.51
HERC1-209ENST00000560519 FAT4Q6V0I7 4981 aa5.61□□□□□ -1.51
HERC1-209ENST00000560519 IGLV5-37A0A075B6J1 123 aa5.6□□□□□ -1.51
HERC1-209ENST00000560519 RPL37AP8A6NKH3 93 aa5.6□□□□□ -1.51
HERC1-209ENST00000560519 HSBP1L1C9JCN9 74 aa5.6□□□□□ -1.51
HERC1-209ENST00000560519 TSPEAR-AS2P59090 65 aa5.6□□□□□ -1.51
HERC1-209ENST00000560519 LINC00167Q96N53 147 aa5.6□□□□□ -1.51
HERC1-209ENST00000560519 IGLV7-46A0A075B6I9 117 aa5.59□□□□□ -1.51
HERC1-209ENST00000560519 KRTAP13-2Q52LG2 175 aa5.59□□□□□ -1.51
HERC1-209ENST00000560519 KRTAP13-1Q8IUC0 172 aa5.59□□□□□ -1.51
HERC1-209ENST00000560519 SND1-IT1Q9HBX3 110 aa5.59□□□□□ -1.51
HERC1-209ENST00000560519 GAGE10A6NGK3 116 aa5.58□□□□□ -1.52
HERC1-209ENST00000560519 SCGB1D1O95968 90 aa5.58□□□□□ -1.52
HERC1-209ENST00000560519 SMIM13P0DJ93 91 aa5.58□□□□□ -1.52
HERC1-209ENST00000560519 RPL24P83731 157 aaKnown RBP5.58□□□□□ -1.52
HERC1-209ENST00000560519 ATOH7Q8N100 152 aa5.58□□□□□ -1.52
HERC1-209ENST00000560519 TMA7Q9Y2S6 64 aaKnown RBP5.58□□□□□ -1.52
HERC1-209ENST00000560519 A0A0U1RRA0 63 aa5.57□□□□□ -1.52
HERC1-209ENST00000560519 ZNF815PA8K554 130 aa5.57□□□□□ -1.52
HERC1-209ENST00000560519 MUC17Q685J3 4493 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 IGKV2-28A0A075B6P5 120 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 A0A0J9YXY3 114 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 IGKV2D-28P01615 120 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 ANKRD39Q53RE8 183 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 SPAG11AQ6PDA7 123 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 FP248Q71RG6 208 aaPredicted RBP5.56□□□□□ -1.52
HERC1-209ENST00000560519 MIR7-3HGQ8N6C7 128 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 MIEN1Q9BRT3 115 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 ANAPC11Q9NYG5 84 aa5.56□□□□□ -1.52
HERC1-209ENST00000560519 TIMM17BO60830 172 aa5.55□□□□□ -1.52
HERC1-209ENST00000560519 FAM19A1Q7Z5A9 133 aa5.55□□□□□ -1.52
HERC1-209ENST00000560519 PPDPFQ9H3Y8 114 aa5.55□□□□□ -1.52
HERC1-209ENST00000560519 PRLHP81277 87 aa5.54□□□□□ -1.52
HERC1-209ENST00000560519 SCGB1D4Q6XE38 83 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms