RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 LINC00587B1AMM8 73 aa7.42□□□□□ -1.22
SNX1-209ENST00000559961 S100A12P80511 92 aa7.42□□□□□ -1.22
SNX1-209ENST00000559961 CBLN2Q8IUK8 224 aa7.42□□□□□ -1.22
SNX1-209ENST00000559961 LINC00304Q8N9R0 145 aa7.42□□□□□ -1.22
SNX1-209ENST00000559961 C11orf86A6NJI1 115 aa7.41□□□□□ -1.22
SNX1-209ENST00000559961 SCO1O75880 301 aa7.41□□□□□ -1.22
SNX1-209ENST00000559961 VPREB1P12018 145 aa7.41□□□□□ -1.22
SNX1-209ENST00000559961 PRLHP81277 87 aa7.41□□□□□ -1.22
SNX1-209ENST00000559961 CHCHD1Q96BP2 118 aaKnown RBP7.41□□□□□ -1.22
SNX1-209ENST00000559961 ANAPC11Q9NYG5 84 aa7.41□□□□□ -1.22
SNX1-209ENST00000559961 A0A096LNJ9 63 aa7.4□□□□□ -1.22
SNX1-209ENST00000559961 TMEM238C9JI98 176 aa7.4□□□□□ -1.22
SNX1-209ENST00000559961 MEIG1Q5JSS6 88 aa7.4□□□□□ -1.22
SNX1-209ENST00000559961 M0R378 163 aa7.39□□□□□ -1.23
SNX1-209ENST00000559961 KRTAP13-1Q8IUC0 172 aa7.39□□□□□ -1.23
SNX1-209ENST00000559961 IFI27L1Q96BM0 104 aa7.39□□□□□ -1.23
SNX1-209ENST00000559961 HIGD2AQ9BW72 106 aa7.39□□□□□ -1.23
SNX1-209ENST00000559961 MAP1LC3CQ9BXW4 147 aa7.39□□□□□ -1.23
SNX1-209ENST00000559961 ZNF706Q9Y5V0 76 aaPredicted RBP7.39□□□□□ -1.23
SNX1-209ENST00000559961 TRAV12-1A0A0B4J245 112 aa7.38□□□□□ -1.23
SNX1-209ENST00000559961 A0A0U1RRA0 63 aa7.38□□□□□ -1.23
SNX1-209ENST00000559961 HERV-K104P63124 156 aa7.38□□□□□ -1.23
SNX1-209ENST00000559961 CTAG1AP78358 180 aa7.38□□□□□ -1.23
SNX1-209ENST00000559961 URB1-AS1Q96HZ7 61 aa7.38□□□□□ -1.23
SNX1-209ENST00000559961 HSBP1O75506 76 aa7.37□□□□□ -1.23
SNX1-209ENST00000559961 MYMXA0A1B0GTQ4 84 aa7.36□□□□□ -1.23
SNX1-209ENST00000559961 TMEM223A0PJW6 202 aa7.36□□□□□ -1.23
SNX1-209ENST00000559961 SPAG11AQ6PDA7 123 aa7.36□□□□□ -1.23
SNX1-209ENST00000559961 BOD1L2Q8IYS8 172 aa7.36□□□□□ -1.23
SNX1-209ENST00000559961 LPAP08519 4548 aa7.35□□□□□ -1.23
SNX1-209ENST00000559961 SMIM13P0DJ93 91 aa7.35□□□□□ -1.23
SNX1-209ENST00000559961 KRTAP13-2Q52LG2 175 aa7.35□□□□□ -1.23
SNX1-209ENST00000559961 PLEKHB2Q96CS7 222 aa7.35□□□□□ -1.23
SNX1-209ENST00000559961 CDIP1Q9H305 208 aa7.35□□□□□ -1.23
SNX1-209ENST00000559961 ETDCA0A1B0GVM5 59 aa7.34□□□□□ -1.23
SNX1-209ENST00000559961 H0Y8G0 127 aa7.33□□□□□ -1.24
SNX1-209ENST00000559961 PRYO14603 147 aa7.33□□□□□ -1.24
SNX1-209ENST00000559961 RETNLBQ9BQ08 111 aa7.33□□□□□ -1.24
SNX1-209ENST00000559961 NDUFA12Q9UI09 145 aa7.33□□□□□ -1.24
SNX1-209ENST00000559961 IGLV7-46A0A075B6I9 117 aa7.32□□□□□ -1.24
SNX1-209ENST00000559961 HERVK_113P61574 105 aa7.32□□□□□ -1.24
SNX1-209ENST00000559961 MIR7-3HGQ8N6C7 128 aa7.32□□□□□ -1.24
SNX1-209ENST00000559961 NCR3O14931 201 aa7.31□□□□□ -1.24
SNX1-209ENST00000559961 LEPROTL1O95214 131 aa7.31□□□□□ -1.24
SNX1-209ENST00000559961 MIEN1Q9BRT3 115 aa7.31□□□□□ -1.24
SNX1-209ENST00000559961 PLNP26678 52 aa7.3□□□□□ -1.24
SNX1-209ENST00000559961 FAM19A2Q8N3H0 131 aa7.3□□□□□ -1.24
SNX1-209ENST00000559961 LINC00337Q8N6G1 96 aa7.3□□□□□ -1.24
SNX1-209ENST00000559961 SPRR4Q96PI1 79 aa7.3□□□□□ -1.24
SNX1-209ENST00000559961 HSPB8Q9UJY1 196 aa7.3□□□□□ -1.24
SNX1-209ENST00000559961 KCNQ1DNQ9H478 68 aa7.29□□□□□ -1.24
SNX1-209ENST00000559961 LGALS3P17931 250 aaKnown RBP7.28□□□□□ -1.24
SNX1-209ENST00000559961 TPRXLQ17RH7 258 aa7.28□□□□□ -1.24
SNX1-209ENST00000559961 C3orf22Q8N5N4 141 aa7.28□□□□□ -1.24
SNX1-209ENST00000559961 Q8NDZ9 215 aa7.28□□□□□ -1.24
SNX1-209ENST00000559961 SMCR5Q8TEV8 140 aa7.28□□□□□ -1.24
SNX1-209ENST00000559961 LEPROTO15243 131 aa7.27□□□□□ -1.25
SNX1-209ENST00000559961 NMUP48645 174 aa7.27□□□□□ -1.25
SNX1-209ENST00000559961 S100A7L2Q5SY68 101 aa7.27□□□□□ -1.25
SNX1-209ENST00000559961 LCE2AQ5TA79 106 aaPredicted RBP7.27□□□□□ -1.25
SNX1-209ENST00000559961 TRBV10-3A0A0K0K1G6 114 aa7.26□□□□□ -1.25
SNX1-209ENST00000559961 DPM2O94777 84 aa7.26□□□□□ -1.25
SNX1-209ENST00000559961 TRGC2P03986 189 aa7.26□□□□□ -1.25
SNX1-209ENST00000559961 DDTP30046 118 aa7.26□□□□□ -1.25
SNX1-209ENST00000559961 PPDPFQ9H3Y8 114 aa7.26□□□□□ -1.25
SNX1-209ENST00000559961 CBY1Q9Y3M2 126 aa7.26□□□□□ -1.25
SNX1-209ENST00000559961 J3QQQ9 107 aa7.25□□□□□ -1.25
SNX1-209ENST00000559961 JOSD1Q15040 202 aaPredicted RBP7.25□□□□□ -1.25
SNX1-209ENST00000559961 GAGE2AQ6NT46 116 aa7.25□□□□□ -1.25
SNX1-209ENST00000559961 FP248Q71RG6 208 aaPredicted RBP7.25□□□□□ -1.25
SNX1-209ENST00000559961 TRBV10-2A0A0K0K1G8 114 aa7.24□□□□□ -1.25
SNX1-209ENST00000559961 SPINK1P00995 79 aa7.24□□□□□ -1.25
SNX1-209ENST00000559961 FABP4P15090 132 aa7.24□□□□□ -1.25
SNX1-209ENST00000559961 HINT1P49773 126 aaPredicted RBP7.24□□□□□ -1.25
SNX1-209ENST00000559961 Q8NBF4 154 aa7.24□□□□□ -1.25
SNX1-209ENST00000559961 YPEL4Q96NS1 127 aa7.24□□□□□ -1.25
SNX1-209ENST00000559961 SERF1AO75920 110 aa7.23□□□□□ -1.25
SNX1-209ENST00000559961 IGKCP01834 107 aa7.23□□□□□ -1.25
SNX1-209ENST00000559961 SPRR1AP35321 89 aa7.23□□□□□ -1.25
SNX1-209ENST00000559961 SPANXB1Q9NS25 103 aaPredicted RBP7.23□□□□□ -1.25
SNX1-209ENST00000559961 DAND5Q8N907 189 aa7.22□□□□□ -1.25
SNX1-209ENST00000559961 IGLV9-49A0A0B4J1Y8 123 aa7.21□□□□□ -1.26
SNX1-209ENST00000559961 LOC107984156A0A0G2JMH3 177 aa7.21□□□□□ -1.26
SNX1-209ENST00000559961 B5MCH6 92 aa7.21□□□□□ -1.26
SNX1-209ENST00000559961 LCE2CQ5TA81 110 aa7.21□□□□□ -1.26
SNX1-209ENST00000559961 SSBP3-AS1Q7Z2R9 100 aa7.21□□□□□ -1.26
SNX1-209ENST00000559961 ARL17AQ8IVW1 177 aa7.21□□□□□ -1.26
SNX1-209ENST00000559961 NDUFC2O95298 119 aa7.2□□□□□ -1.26
SNX1-209ENST00000559961 LINC00483Q53H64 154 aa7.19□□□□□ -1.26
SNX1-209ENST00000559961 TRAV23DV6A0A075B6W5 121 aa7.18□□□□□ -1.26
SNX1-209ENST00000559961 KRTAP4-16G5E9R7 235 aaPredicted RBP7.18□□□□□ -1.26
SNX1-209ENST00000559961 TSPEAR-AS2P59090 65 aa7.18□□□□□ -1.26
SNX1-209ENST00000559961 MOBPQ13875 183 aa7.18□□□□□ -1.26
SNX1-209ENST00000559961 Q6ZRX8 168 aa7.18□□□□□ -1.26
SNX1-209ENST00000559961 PMCHL2Q9BQD1 86 aa7.18□□□□□ -1.26
SNX1-209ENST00000559961 C9orf153Q5TBE3 101 aa7.17□□□□□ -1.26
SNX1-209ENST00000559961 SLC25A20O43772 301 aa7.16□□□□□ -1.26
SNX1-209ENST00000559961 NPC2P61916 151 aa7.16□□□□□ -1.26
SNX1-209ENST00000559961 SLC25A34Q6PIV7 304 aa7.16□□□□□ -1.26
SNX1-209ENST00000559961 OR13C6PQ8NH95 151 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms