RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	11.01	□□□□□ -0.65
SHMT2-231	ENST00000557433	UBR5	O95071	2799 aa	Predicted RBP	11.01	□□□□□ -0.65
SHMT2-231	ENST00000557433	DIRC1	Q969H9	104 aa		11.01	□□□□□ -0.65
SHMT2-231	ENST00000557433	MIF	P14174	115 aa		11	□□□□□ -0.65
SHMT2-231	ENST00000557433	C10orf25	Q5T742	122 aa		11	□□□□□ -0.65
SHMT2-231	ENST00000557433	WFDC9	Q8NEX5	89 aa		11	□□□□□ -0.65
SHMT2-231	ENST00000557433	SETX	Q7Z333	2677 aa	Known RBP	11	□□□□□ -0.65
SHMT2-231	ENST00000557433	LINC01547	P58512	204 aa	Predicted RBP	10.99	□□□□□ -0.65
SHMT2-231	ENST00000557433	JMJD1C	Q15652	2540 aa		10.99	□□□□□ -0.65
SHMT2-231	ENST00000557433		Q6ZQY7	126 aa		10.99	□□□□□ -0.65
SHMT2-231	ENST00000557433		Q6ZVQ6	151 aa		10.99	□□□□□ -0.65
SHMT2-231	ENST00000557433		Q8N3U1	123 aa		10.97	□□□□□ -0.65
SHMT2-231	ENST00000557433	ABCA12	Q86UK0	2595 aa		10.97	□□□□□ -0.65
SHMT2-231	ENST00000557433	SPART-AS1	P0CW21	52 aa		10.97	□□□□□ -0.65
SHMT2-231	ENST00000557433	DEFB135	Q30KP9	77 aa		10.96	□□□□□ -0.65
SHMT2-231	ENST00000557433	ITPR3	Q14573	2671 aa		10.96	□□□□□ -0.65
SHMT2-231	ENST00000557433	SON	P18583	2426 aa	Known RBP	10.96	□□□□□ -0.66
SHMT2-231	ENST00000557433	COX7B	P24311	80 aa		10.96	□□□□□ -0.66
SHMT2-231	ENST00000557433	KRTAP10-3	P60369	221 aa		10.96	□□□□□ -0.66
SHMT2-231	ENST00000557433	HELZ2	Q9BYK8	2649 aa	Known RBP	10.95	□□□□□ -0.66
SHMT2-231	ENST00000557433	TRBV7-4	A0A0J9YYF1	115 aa		10.95	□□□□□ -0.66
SHMT2-231	ENST00000557433	C20orf197	Q8N268	126 aa		10.95	□□□□□ -0.66
SHMT2-231	ENST00000557433	ZNF73	O43830	326 aa	Predicted RBP	10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433	HAMP	P81172	84 aa		10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433		Q8NAQ8	132 aa		10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433	GCN1	Q92616	2671 aa	Known RBP	10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433	ELOF1	P60002	83 aa	Known RBP	10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433	KLKP1	Q107X0	134 aa		10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433	KLK12	Q9UKR0	248 aa		10.94	□□□□□ -0.66
SHMT2-231	ENST00000557433	FAM236D	A0A1B0GTK5	79 aa		10.93	□□□□□ -0.66
SHMT2-231	ENST00000557433	FAM236C	P0DP71	79 aa		10.93	□□□□□ -0.66
SHMT2-231	ENST00000557433	C6orf48	Q9UBA6	75 aa		10.93	□□□□□ -0.66
SHMT2-231	ENST00000557433	BAHCC1	Q9P281	2608 aa		10.93	□□□□□ -0.66
SHMT2-231	ENST00000557433	SPATA3	Q8NHX4	192 aa		10.92	□□□□□ -0.66
SHMT2-231	ENST00000557433	DEFB4A	O15263	64 aa		10.91	□□□□□ -0.66
SHMT2-231	ENST00000557433	CELA1	Q9UNI1	258 aa		10.9	□□□□□ -0.66
SHMT2-231	ENST00000557433	CENPE	Q02224	2701 aa		10.9	□□□□□ -0.66
SHMT2-231	ENST00000557433		M0R2N4	97 aa		10.9	□□□□□ -0.67
SHMT2-231	ENST00000557433		M0R378	163 aa		10.9	□□□□□ -0.67
SHMT2-231	ENST00000557433	OXT	P01178	125 aa		10.9	□□□□□ -0.67
SHMT2-231	ENST00000557433	EGFEM1P	Q0D2K5	195 aa		10.9	□□□□□ -0.67
SHMT2-231	ENST00000557433	NDUFC1	O43677	76 aa		10.89	□□□□□ -0.67
SHMT2-231	ENST00000557433	SERP1	Q9Y6X1	66 aa		10.89	□□□□□ -0.67
SHMT2-231	ENST00000557433		H7BZZ5	65 aa		10.88	□□□□□ -0.67
SHMT2-231	ENST00000557433	EPM2A	B3EWF7	344 aa		10.88	□□□□□ -0.67
SHMT2-231	ENST00000557433		F8WDY8	70 aa		10.88	□□□□□ -0.67
SHMT2-231	ENST00000557433	VPREB1	P12018	145 aa		10.88	□□□□□ -0.67
SHMT2-231	ENST00000557433	APC	P25054	2843 aa		10.88	□□□□□ -0.67
SHMT2-231	ENST00000557433	TENM4	Q6N022	2769 aa		10.86	□□□□□ -0.67
SHMT2-231	ENST00000557433		H3BNG1	76 aa		10.86	□□□□□ -0.67
SHMT2-231	ENST00000557433	WIPF1	O43516	503 aa		10.86	□□□□□ -0.67
SHMT2-231	ENST00000557433	CAMK2N2	Q96S95	79 aa		10.86	□□□□□ -0.67
SHMT2-231	ENST00000557433	XAGE1A	Q9HD64	81 aa		10.86	□□□□□ -0.67
SHMT2-231	ENST00000557433	FLNA	P21333	2647 aa	Known RBP	10.85	□□□□□ -0.67
SHMT2-231	ENST00000557433	HTN3	P15516	51 aa		10.85	□□□□□ -0.67
SHMT2-231	ENST00000557433	TRAV10	A0A0B4J240	114 aa		10.84	□□□□□ -0.67
SHMT2-231	ENST00000557433	ERC2-IT1	O76042	136 aa		10.84	□□□□□ -0.67
SHMT2-231	ENST00000557433	ATP5E	P56381	51 aa	Predicted RBP	10.84	□□□□□ -0.67
SHMT2-231	ENST00000557433		Q5XG85	94 aa		10.84	□□□□□ -0.67
SHMT2-231	ENST00000557433	LINC00528	Q8N1L1	170 aa		10.84	□□□□□ -0.67
SHMT2-231	ENST00000557433	FN1	P02751	2386 aa	Known RBP	10.83	□□□□□ -0.68
SHMT2-231	ENST00000557433	CCDC168	Q8NDH2	2452 aa		10.82	□□□□□ -0.68
SHMT2-231	ENST00000557433	NF1	P21359	2839 aa		10.81	□□□□□ -0.68
SHMT2-231	ENST00000557433	ZNF469	Q96JG9	3925 aa	Predicted RBP	10.8	□□□□□ -0.68
SHMT2-231	ENST00000557433	NBPF19	A0A087WUL8	3843 aa		10.8	□□□□□ -0.68
SHMT2-231	ENST00000557433	KRTAP26-1	Q6PEX3	210 aa		10.8	□□□□□ -0.68
SHMT2-231	ENST00000557433		A0A1B0GW54	56 aa		10.78	□□□□□ -0.68
SHMT2-231	ENST00000557433	SETD2	Q9BYW2	2564 aa	Predicted RBP	10.78	□□□□□ -0.68
SHMT2-231	ENST00000557433		Q6ZRU5	148 aa		10.77	□□□□□ -0.69
SHMT2-231	ENST00000557433	C4orf26	Q17RF5	130 aa		10.76	□□□□□ -0.69
SHMT2-231	ENST00000557433	HIGD2B	Q4VC39	106 aa		10.76	□□□□□ -0.69
SHMT2-231	ENST00000557433	ANK3	Q12955	4377 aa	Known RBP	10.76	□□□□□ -0.69
SHMT2-231	ENST00000557433	NREP	Q16612	68 aa		10.76	□□□□□ -0.69
SHMT2-231	ENST00000557433	FLNB	O75369	2602 aa	Known RBP	10.75	□□□□□ -0.69
SHMT2-231	ENST00000557433	BPY2	O14599	106 aa		10.75	□□□□□ -0.69
SHMT2-231	ENST00000557433	C15orf56	Q8N910	161 aa		10.75	□□□□□ -0.69
SHMT2-231	ENST00000557433	RMI2	Q96E14	147 aa		10.75	□□□□□ -0.69
SHMT2-231	ENST00000557433		F8WEM9	126 aa		10.74	□□□□□ -0.69
SHMT2-231	ENST00000557433	WFDC10B	Q8IUB3	73 aa		10.74	□□□□□ -0.69
SHMT2-231	ENST00000557433	TM2D3	Q9BRN9	247 aa		10.74	□□□□□ -0.69
SHMT2-231	ENST00000557433	SNURF	Q9Y675	71 aa		10.74	□□□□□ -0.69
SHMT2-231	ENST00000557433	NIPBL	Q6KC79	2804 aa	eCLIP	10.73	□□□□□ -0.69
SHMT2-231	ENST00000557433	SMIM26	A0A096LP01	95 aa		10.73	□□□□□ -0.69
SHMT2-231	ENST00000557433	KPRP	Q5T749	579 aa	Predicted RBP	10.73	□□□□□ -0.69
SHMT2-231	ENST00000557433	KCNQ1DN	Q9H478	68 aa		10.73	□□□□□ -0.69
SHMT2-231	ENST00000557433	HRCT1	Q6UXD1	115 aa		10.72	□□□□□ -0.69
SHMT2-231	ENST00000557433	SCX	Q7RTU7	201 aa		10.72	□□□□□ -0.69
SHMT2-231	ENST00000557433	HECTD1	Q9ULT8	2610 aa		10.72	□□□□□ -0.69
SHMT2-231	ENST00000557433	C1orf43	Q9BWL3	253 aa		10.72	□□□□□ -0.69
SHMT2-231	ENST00000557433	TMEM254	Q8TBM7	123 aa		10.71	□□□□□ -0.69
SHMT2-231	ENST00000557433	IGKV4-1	P06312	121 aa		10.7	□□□□□ -0.7
SHMT2-231	ENST00000557433	MTOR	P42345	2549 aa		10.7	□□□□□ -0.7
SHMT2-231	ENST00000557433	IGLV5-48	A0A075B6I7	105 aa		10.7	□□□□□ -0.7
SHMT2-231	ENST00000557433	SMR3A	Q99954	134 aa		10.7	□□□□□ -0.7
SHMT2-231	ENST00000557433	SYCN	Q0VAF6	134 aa		10.69	□□□□□ -0.7
SHMT2-231	ENST00000557433	LINC01556	Q5JQF7	62 aa		10.69	□□□□□ -0.7
SHMT2-231	ENST00000557433		Q6ZRP5	223 aa		10.69	□□□□□ -0.7
SHMT2-231	ENST00000557433	NKAPP1	Q8N9T2	125 aa		10.69	□□□□□ -0.7
SHMT2-231	ENST00000557433	DHRS4-AS1	Q9P1J3	65 aa		10.69	□□□□□ -0.7
SHMT2-231	ENST00000557433	PLA2G2D	Q9UNK4	145 aa		10.69	□□□□□ -0.7

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