RNA–Protein interactions for RNA: ENST00000555506.1

KTN1-222, Transcript of kinectin 1, human

TSL 1 (best)

Gene KTN1, Length 1,464 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KTN1-222	ENST00000555506	DCAF1	Q9Y4B6	1507 aa		0.55	□□□□□ -2.32
KTN1-222	ENST00000555506	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	0.55	□□□□□ -2.32
KTN1-222	ENST00000555506	PLGLA	Q15195	96 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	SPINK6	Q6UWN8	80 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	KIF20B	Q96Q89	1820 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	KIAA0556	O60303	1618 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	LRRC9	Q6ZRR7	1453 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	LRRC37A	A6NMS7	1700 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	KANTR	A0A1W2PQU2	76 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506		K7EQZ3	153 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	ADIRF	Q15847	76 aa		0.54	□□□□□ -2.32
KTN1-222	ENST00000555506	NAV2	Q8IVL1	2488 aa		0.53	□□□□□ -2.32
KTN1-222	ENST00000555506	RGPD1	P0DJD0	1748 aa		0.53	□□□□□ -2.32
KTN1-222	ENST00000555506	KDM5D	Q9BY66	1539 aa		0.53	□□□□□ -2.32
KTN1-222	ENST00000555506		Q5VSD8	79 aa		0.53	□□□□□ -2.33
KTN1-222	ENST00000555506	OTOG	Q6ZRI0	2925 aa		0.52	□□□□□ -2.33
KTN1-222	ENST00000555506	CNOT1	A5YKK6	2376 aa	Known RBP	0.52	□□□□□ -2.33
KTN1-222	ENST00000555506	MDN1	Q9NU22	5596 aa		0.51	□□□□□ -2.33
KTN1-222	ENST00000555506		A0A1B0GUT8	65 aa		0.51	□□□□□ -2.33
KTN1-222	ENST00000555506	CEBPZOS	A8MTT3	80 aa		0.51	□□□□□ -2.33
KTN1-222	ENST00000555506	BVES-AS1	Q5T3Y7	98 aa		0.51	□□□□□ -2.33
KTN1-222	ENST00000555506	CHD6	Q8TD26	2715 aa		0.51	□□□□□ -2.33
KTN1-222	ENST00000555506	NCOR1	O75376	2440 aa		0.5	□□□□□ -2.33
KTN1-222	ENST00000555506	RGPD2	P0DJD1	1756 aa		0.5	□□□□□ -2.33
KTN1-222	ENST00000555506	RRBP1	Q9P2E9	1410 aa	Known RBP	0.5	□□□□□ -2.33
KTN1-222	ENST00000555506	FXYD6-FXYD2	A0A087WZ82	144 aa		0.5	□□□□□ -2.33
KTN1-222	ENST00000555506	COX6B1	P14854	86 aa		0.5	□□□□□ -2.33
KTN1-222	ENST00000555506	DEFB112	Q30KQ8	113 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506		Q5BKY6	102 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	DEFB121	Q5J5C9	76 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	QSER1	Q2KHR3	1735 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	FMN2	Q9NZ56	1722 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	SPTA1	P02549	2419 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	CFAP74	Q9C0B2	1584 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	TSC2	P49815	1807 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	PPRC1	Q5VV67	1664 aa	Known RBP	0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	CCDC141	Q6ZP82	1450 aa		0.49	□□□□□ -2.33
KTN1-222	ENST00000555506	MAP3K1	Q13233	1512 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506		H3BUT2	72 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	USMG5	Q96IX5	58 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	VWF	P04275	2813 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	UNC79	Q9P2D8	2635 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	UBR3	Q6ZT12	1888 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	ZNF831	Q5JPB2	1677 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	NKTR	P30414	1462 aa	Known RBP	0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	LRRC7	Q96NW7	1537 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	SPRR1B	P22528	89 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	SPRR1A	P35321	89 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	CRIPT	Q9P021	101 aa		0.48	□□□□□ -2.33
KTN1-222	ENST00000555506	USP32	Q8NFA0	1604 aa		0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	ABCC1	P33527	1531 aa		0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	CSPG4	Q6UVK1	2322 aa		0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	TRAV21	A0A0B4J279	112 aa		0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	LTN1	O94822	1766 aa		0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	COL14A1	Q05707	1796 aa	Known RBP	0.47	□□□□□ -2.33
KTN1-222	ENST00000555506	ATR	Q13535	2644 aa		0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	RGPD8	O14715	1765 aa	Predicted RBP	0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	RGPD5	Q99666	1765 aa		0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	SPINK1	P00995	79 aa		0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	COX7B	P24311	80 aa		0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	LRP1	Q07954	4544 aa	Known RBP	0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	URB2	Q14146	1524 aa	Known RBP	0.46	□□□□□ -2.34
KTN1-222	ENST00000555506	PTPN23	Q9H3S7	1636 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	REV3L	O60673	3130 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	PHGR1	C9JFL3	82 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	COX8A	P10176	69 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	C18orf32	Q8TCD1	76 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	NCOA2	Q15596	1464 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	ABCA8	O94911	1581 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	PIK3C2B	O00750	1634 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	POLR1A	O95602	1720 aa	Predicted RBP	0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	LRRIQ1	Q96JM4	1722 aa		0.45	□□□□□ -2.34
KTN1-222	ENST00000555506	SPTY2D1-AS1	A0A0U1RR47	76 aa		0.44	□□□□□ -2.34
KTN1-222	ENST00000555506	UBR5	O95071	2799 aa	Predicted RBP	0.44	□□□□□ -2.34
KTN1-222	ENST00000555506	CFD	P00746	253 aa	Predicted RBP	0.44	□□□□□ -2.34
KTN1-222	ENST00000555506	GAFA1	Q96PS6	74 aa		0.44	□□□□□ -2.34
KTN1-222	ENST00000555506	SCN11A	Q9UI33	1791 aa		0.44	□□□□□ -2.34
KTN1-222	ENST00000555506	SYNE1	Q8NF91	8797 aa	Known RBP	0.43	□□□□□ -2.34
KTN1-222	ENST00000555506	ANKAR	Q7Z5J8	1434 aa		0.43	□□□□□ -2.34
KTN1-222	ENST00000555506	CPSF4L	A6NMK7	179 aa	Known RBP	0.43	□□□□□ -2.34
KTN1-222	ENST00000555506	TENM4	Q6N022	2769 aa		0.43	□□□□□ -2.34
KTN1-222	ENST00000555506	KNL1	Q8NG31	2342 aa		0.43	□□□□□ -2.34
KTN1-222	ENST00000555506	MAGI3	Q5TCQ9	1506 aa		0.43	□□□□□ -2.34
KTN1-222	ENST00000555506	IGSF10	Q6WRI0	2623 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506		I3L3M4	83 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	DOT1L	Q8TEK3	1739 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	WNK2	Q9Y3S1	2297 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	CHD8	Q9HCK8	2581 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	NCOR2	Q9Y618	2525 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	CELSR1	Q9NYQ6	3014 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	BCOR	Q6W2J9	1755 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	ARFGEF2	Q9Y6D5	1785 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	BSN	Q9UPA5	3926 aa		0.42	□□□□□ -2.34
KTN1-222	ENST00000555506	NDUFB1	O75438	58 aa		0.41	□□□□□ -2.34
KTN1-222	ENST00000555506	DEFB109B	Q30KR1	87 aa		0.41	□□□□□ -2.34
KTN1-222	ENST00000555506	ATP5EP2	Q5VTU8	51 aa		0.41	□□□□□ -2.34
KTN1-222	ENST00000555506	MRPL34	Q9BQ48	92 aa	Known RBP	0.41	□□□□□ -2.34
KTN1-222	ENST00000555506	PTPN13	Q12923	2485 aa		0.41	□□□□□ -2.34
KTN1-222	ENST00000555506	FAT2	Q9NYQ8	4349 aa		0.41	□□□□□ -2.34

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