RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 HIST1H2BMQ99879 126 aa11.57□□□□□ -0.56
PTCH1-227ENST00000553256 RPL37AP8A6NKH3 93 aa11.55□□□□□ -0.56
PTCH1-227ENST00000553256 BCE1O60756 84 aa11.55□□□□□ -0.56
PTCH1-227ENST00000553256 TSPEAR-AS2P59090 65 aa11.55□□□□□ -0.56
PTCH1-227ENST00000553256 GAGE10A6NGK3 116 aa11.54□□□□□ -0.56
PTCH1-227ENST00000553256 PRR26Q8N8Z3 221 aa11.54□□□□□ -0.56
PTCH1-227ENST00000553256 IGLV1-50A0A075B6I6 118 aa11.53□□□□□ -0.56
PTCH1-227ENST00000553256 HSPB8Q9UJY1 196 aa11.53□□□□□ -0.56
PTCH1-227ENST00000553256 FABP4P15090 132 aa11.52□□□□□ -0.57
PTCH1-227ENST00000553256 H0Y8G0 127 aa11.51□□□□□ -0.57
PTCH1-227ENST00000553256 PLNP26678 52 aa11.5□□□□□ -0.57
PTCH1-227ENST00000553256 NKAPP1Q8N9T2 125 aa11.5□□□□□ -0.57
PTCH1-227ENST00000553256 PMCHL2Q9BQD1 86 aa11.5□□□□□ -0.57
PTCH1-227ENST00000553256 SMIM13P0DJ93 91 aa11.49□□□□□ -0.57
PTCH1-227ENST00000553256 NDUFA12Q9UI09 145 aa11.49□□□□□ -0.57
PTCH1-227ENST00000553256 LEPROTO15243 131 aa11.48□□□□□ -0.57
PTCH1-227ENST00000553256 DPM2O94777 84 aa11.48□□□□□ -0.57
PTCH1-227ENST00000553256 LINC00158P58513 81 aa11.48□□□□□ -0.57
PTCH1-227ENST00000553256 HERV-K104P63124 156 aa11.48□□□□□ -0.57
PTCH1-227ENST00000553256 COA6Q5JTJ3 125 aaKnown RBP11.48□□□□□ -0.57
PTCH1-227ENST00000553256 IGKV2-28A0A075B6P5 120 aa11.47□□□□□ -0.57
PTCH1-227ENST00000553256 IGKV2D-28P01615 120 aa11.47□□□□□ -0.57
PTCH1-227ENST00000553256 RPL24P83731 157 aaKnown RBP11.47□□□□□ -0.57
PTCH1-227ENST00000553256 LOC107984156A0A0G2JMH3 177 aa11.46□□□□□ -0.57
PTCH1-227ENST00000553256 A0A0U1RRA0 63 aa11.46□□□□□ -0.57
PTCH1-227ENST00000553256 M0R378 163 aa11.46□□□□□ -0.57
PTCH1-227ENST00000553256 IGKCP01834 107 aa11.46□□□□□ -0.57
PTCH1-227ENST00000553256 RPL28P46779 137 aaKnown RBP11.46□□□□□ -0.57
PTCH1-227ENST00000553256 ARL17AQ8IVW1 177 aa11.46□□□□□ -0.57
PTCH1-227ENST00000553256 MIR7-3HGQ8N6C7 128 aa11.45□□□□□ -0.58
PTCH1-227ENST00000553256 TMEM126AQ9H061 195 aa11.45□□□□□ -0.58
PTCH1-227ENST00000553256 MYMXA0A1B0GTQ4 84 aa11.44□□□□□ -0.58
PTCH1-227ENST00000553256 TMEM238C9JI98 176 aa11.44□□□□□ -0.58
PTCH1-227ENST00000553256 PLEKHB2Q96CS7 222 aa11.44□□□□□ -0.58
PTCH1-227ENST00000553256 MAP1LC3CQ9BXW4 147 aa11.44□□□□□ -0.58
PTCH1-227ENST00000553256 SYS1-DBNDD2H3BUS1 97 aa11.43□□□□□ -0.58
PTCH1-227ENST00000553256 J3QQQ9 107 aa11.43□□□□□ -0.58
PTCH1-227ENST00000553256 LPAP08519 4548 aa11.43□□□□□ -0.58
PTCH1-227ENST00000553256 A0A087X002 238 aa11.42□□□□□ -0.58
PTCH1-227ENST00000553256 MEIG1Q5JSS6 88 aa11.41□□□□□ -0.58
PTCH1-227ENST00000553256 LINC01545Q5VT33 79 aa11.41□□□□□ -0.58
PTCH1-227ENST00000553256 LINC00587B1AMM8 73 aa11.4□□□□□ -0.58
PTCH1-227ENST00000553256 E9PLD3 99 aa11.4□□□□□ -0.58
PTCH1-227ENST00000553256 RNF213Q63HN8 5207 aa11.39□□□□□ -0.59
PTCH1-227ENST00000553256 NMUP48645 174 aa11.39□□□□□ -0.59
PTCH1-227ENST00000553256 BOD1L2Q8IYS8 172 aa11.39□□□□□ -0.59
PTCH1-227ENST00000553256 KRTAP4-16G5E9R7 235 aaPredicted RBP11.38□□□□□ -0.59
PTCH1-227ENST00000553256 SPRR1AP35321 89 aa11.38□□□□□ -0.59
PTCH1-227ENST00000553256 RPL13AP40429 203 aaKnown RBP11.38□□□□□ -0.59
PTCH1-227ENST00000553256 PRLHP81277 87 aa11.38□□□□□ -0.59
PTCH1-227ENST00000553256 IGKV2D-26A0A0A0MRZ7 120 aa11.37□□□□□ -0.59
PTCH1-227ENST00000553256 UBE2AP49459 152 aa11.37□□□□□ -0.59
PTCH1-227ENST00000553256 HERVK_113P61574 105 aa11.37□□□□□ -0.59
PTCH1-227ENST00000553256 DAND5Q8N907 189 aa11.37□□□□□ -0.59
PTCH1-227ENST00000553256 EIF4EBP3O60516 100 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-227ENST00000553256 KRTAP13-2Q52LG2 175 aa11.36□□□□□ -0.59
PTCH1-227ENST00000553256 PET117Q6UWS5 81 aa11.36□□□□□ -0.59
PTCH1-227ENST00000553256 KCNQ1DNQ9H478 68 aa11.36□□□□□ -0.59
PTCH1-227ENST00000553256 ANAPC11Q9NYG5 84 aa11.36□□□□□ -0.59
PTCH1-227ENST00000553256 C3orf79P0CE67 100 aa11.35□□□□□ -0.59
PTCH1-227ENST00000553256 A0A0J9YXY3 114 aa11.34□□□□□ -0.59
PTCH1-227ENST00000553256 ADAMTSL4-AS1Q5T5F5 129 aa11.34□□□□□ -0.59
PTCH1-227ENST00000553256 SOSTDC1Q6X4U4 206 aa11.34□□□□□ -0.59
PTCH1-227ENST00000553256 FAM19A1Q7Z5A9 133 aa11.34□□□□□ -0.59
PTCH1-227ENST00000553256 LITAFQ99732 161 aa11.34□□□□□ -0.59
PTCH1-227ENST00000553256 NCR3O14931 201 aa11.33□□□□□ -0.6
PTCH1-227ENST00000553256 LGALS3P17931 250 aaKnown RBP11.33□□□□□ -0.6
PTCH1-227ENST00000553256 PRYO14603 147 aa11.32□□□□□ -0.6
PTCH1-227ENST00000553256 ATP6V1G1O75348 118 aa11.32□□□□□ -0.6
PTCH1-227ENST00000553256 FAM229BQ4G0N7 80 aa11.32□□□□□ -0.6
PTCH1-227ENST00000553256 TRBV10-3A0A0K0K1G6 114 aa11.31□□□□□ -0.6
PTCH1-227ENST00000553256 TRBV10-2A0A0K0K1G8 114 aa11.31□□□□□ -0.6
PTCH1-227ENST00000553256 LINC00337Q8N6G1 96 aa11.31□□□□□ -0.6
PTCH1-227ENST00000553256 CRYGAP11844 174 aa11.3□□□□□ -0.6
PTCH1-227ENST00000553256 NDUFC2O95298 119 aa11.29□□□□□ -0.6
PTCH1-227ENST00000553256 IGLV6-57P01721 117 aa11.26□□□□□ -0.61
PTCH1-227ENST00000553256 TTTY13Q9BZ97 58 aa11.26□□□□□ -0.61
PTCH1-227ENST00000553256 SPANXB1Q9NS25 103 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-227ENST00000553256 TIMM17BO60830 172 aa11.25□□□□□ -0.61
PTCH1-227ENST00000553256 SMCR5Q8TEV8 140 aa11.25□□□□□ -0.61
PTCH1-227ENST00000553256 SPRR4Q96PI1 79 aa11.25□□□□□ -0.61
PTCH1-227ENST00000553256 S100A1P23297 94 aa11.24□□□□□ -0.61
PTCH1-227ENST00000553256 KRTDAPP60985 99 aa11.24□□□□□ -0.61
PTCH1-227ENST00000553256 TYMSOSQ8TAI1 123 aa11.24□□□□□ -0.61
PTCH1-227ENST00000553256 HIGD2AQ9BW72 106 aa11.23□□□□□ -0.61
PTCH1-227ENST00000553256 B5MCH6 92 aa11.22□□□□□ -0.61
PTCH1-227ENST00000553256 DDTP30046 118 aa11.22□□□□□ -0.61
PTCH1-227ENST00000553256 ANKRD39Q53RE8 183 aa11.22□□□□□ -0.61
PTCH1-227ENST00000553256 LINC00308Q8TCZ7 52 aa11.21□□□□□ -0.61
PTCH1-227ENST00000553256 HIST3H2BBQ8N257 126 aa11.2□□□□□ -0.62
PTCH1-227ENST00000553256 ZNF815PA8K554 130 aa11.19□□□□□ -0.62
PTCH1-227ENST00000553256 NPC2P61916 151 aa11.19□□□□□ -0.62
PTCH1-227ENST00000553256 C3orf22Q8N5N4 141 aa11.19□□□□□ -0.62
PTCH1-227ENST00000553256 Q9BRP9 147 aa11.19□□□□□ -0.62
PTCH1-227ENST00000553256 MIEN1Q9BRT3 115 aa11.19□□□□□ -0.62
PTCH1-227ENST00000553256 ERC2-IT1O76042 136 aa11.18□□□□□ -0.62
PTCH1-227ENST00000553256 LINC00483Q53H64 154 aa11.18□□□□□ -0.62
PTCH1-227ENST00000553256 ETDCA0A1B0GVM5 59 aa11.17□□□□□ -0.62
PTCH1-227ENST00000553256 HIST1H2BLQ99880 126 aa11.17□□□□□ -0.62
PTCH1-227ENST00000553256 Q6ZRX8 168 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms