RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 A0A1B0GUV1 79 aa3.78□□□□□ -1.8
LIMA1-215ENST00000552823 KIAA0087Q14695 138 aa3.78□□□□□ -1.8
LIMA1-215ENST00000552823 Q8IZM0 81 aa3.78□□□□□ -1.8
LIMA1-215ENST00000552823 DEFB105AQ8NG35 78 aa3.78□□□□□ -1.8
LIMA1-215ENST00000552823 ANAPC13Q9BS18 74 aa3.78□□□□□ -1.8
LIMA1-215ENST00000552823 LAMTOR3Q9UHA4 124 aa3.78□□□□□ -1.8
LIMA1-215ENST00000552823 H3BT86 120 aa3.77□□□□□ -1.81
LIMA1-215ENST00000552823 CASC10Q5T4H9 136 aa3.77□□□□□ -1.81
LIMA1-215ENST00000552823 Q6ZRU5 148 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 C6orf48Q9UBA6 75 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 TRBV10-3A0A0K0K1G6 114 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 RPL37AP8A6NKH3 93 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 SCGB1A1P11684 91 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 RPL28P46779 137 aaKnown RBP3.76□□□□□ -1.81
LIMA1-215ENST00000552823 SDIM1Q6ZPB5 146 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 TGP01266 2768 aa3.76□□□□□ -1.81
LIMA1-215ENST00000552823 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-215ENST00000552823 FAM19A3Q7Z5A8 133 aa3.75□□□□□ -1.81
LIMA1-215ENST00000552823 IGKV2-24A0A0C4DH68 120 aa3.75□□□□□ -1.81
LIMA1-215ENST00000552823 HIST1H4AP62805 103 aaKnown RBP3.75□□□□□ -1.81
LIMA1-215ENST00000552823 ANK2Q01484 3957 aa3.75□□□□□ -1.81
LIMA1-215ENST00000552823 FUSP35637 526 aaKnown RBP eCLIP3.75□□□□□ -1.81
LIMA1-215ENST00000552823 CXCL5P42830 114 aa3.75□□□□□ -1.81
LIMA1-215ENST00000552823 SEC61GP60059 68 aa3.75□□□□□ -1.81
LIMA1-215ENST00000552823 TMEM126AQ9H061 195 aa3.75□□□□□ -1.81
LIMA1-215ENST00000552823 A0A087WVE0 104 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 B5MCH6 92 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 Q6ZQY7 126 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 SMCR5Q8TEV8 140 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 ORMDL1Q9P0S3 153 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 K7EIL1 84 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 M0R2N4 97 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 TRACP01848 142 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 SCXQ7RTU7 201 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 UBE2DNLQ8IWF7 75 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 DPH3Q96FX2 82 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 MDFIQ99750 246 aa3.74□□□□□ -1.81
LIMA1-215ENST00000552823 FAM236AA0A1B0GUQ0 79 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 FAM236BA0A1B0GV22 79 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 H0YGX0 51 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 SS18L2Q9UHA2 77 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 FAM168BA1KXE4 195 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 CCDC179H3BU77 68 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 J3QL48 77 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 C22orf24Q9Y442 160 aa3.73□□□□□ -1.81
LIMA1-215ENST00000552823 PSCAO43653 123 aa3.72□□□□□ -1.81
LIMA1-215ENST00000552823 FAM19A5Q7Z5A7 132 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-215ENST00000552823 LINC00588Q9Y4M8 146 aa3.72□□□□□ -1.81
LIMA1-215ENST00000552823 HAMPP81172 84 aa3.72□□□□□ -1.81
LIMA1-215ENST00000552823 SYCNQ0VAF6 134 aa3.72□□□□□ -1.81
LIMA1-215ENST00000552823 Q8N814 137 aa3.72□□□□□ -1.81
LIMA1-215ENST00000552823 LINC00846Q9NV44 126 aa3.72□□□□□ -1.81
LIMA1-215ENST00000552823 KLK5Q9Y337 293 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-215ENST00000552823 SRRM2Q9UQ35 2752 aaKnown RBP3.72□□□□□ -1.81
LIMA1-215ENST00000552823 NKAPP1Q8N9T2 125 aa3.71□□□□□ -1.81
LIMA1-215ENST00000552823 hADV29S1A0JD25 119 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 NDUFV3P56181 108 aaKnown RBP3.71□□□□□ -1.82
LIMA1-215ENST00000552823 Q6ZRP5 223 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 C3orf22Q8N5N4 141 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 C15orf56Q8N910 161 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 USP17L23D6RBM5 183 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 INAFM2P0DMQ5 153 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 PRR34Q9NV39 138 aa3.71□□□□□ -1.82
LIMA1-215ENST00000552823 TRAV23DV6A0A075B6W5 121 aa3.7□□□□□ -1.82
LIMA1-215ENST00000552823 TRAV10A0A0B4J240 114 aa3.7□□□□□ -1.82
LIMA1-215ENST00000552823 SERTAD4-AS1Q5TG53 156 aa3.7□□□□□ -1.82
LIMA1-215ENST00000552823 DIRC1Q969H9 104 aa3.7□□□□□ -1.82
LIMA1-215ENST00000552823 A0A0G2JQZ4 141 aa3.69□□□□□ -1.82
LIMA1-215ENST00000552823 A0A1W2PNN7 141 aa3.69□□□□□ -1.82
LIMA1-215ENST00000552823 ZNF73O43830 326 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-215ENST00000552823 C5orf47Q569G3 176 aa3.69□□□□□ -1.82
LIMA1-215ENST00000552823 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-215ENST00000552823 A0A096LNI7 61 aa3.69□□□□□ -1.82
LIMA1-215ENST00000552823 COX7BP24311 80 aa3.69□□□□□ -1.82
LIMA1-215ENST00000552823 SMIM20Q8N5G0 67 aa3.69□□□□□ -1.82
LIMA1-215ENST00000552823 EGFEM1PQ0D2K5 195 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 COX17Q14061 63 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 LINC00575Q6W349 94 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 FAM19A1Q7Z5A9 133 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 COL7A1Q02388 2944 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 NHLRC4P0CG21 123 aaPredicted RBP3.68□□□□□ -1.82
LIMA1-215ENST00000552823 RBM3P98179 157 aaKnown RBP3.68□□□□□ -1.82
LIMA1-215ENST00000552823 NDUFC2-KCTD14E9PQ53 114 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 C3orf84H3BNL1 204 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 CHTF8P0CG12 524 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 UBE2BP63146 152 aa3.68□□□□□ -1.82
LIMA1-215ENST00000552823 TMEM256-PLSCR3K7ERE1 68 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 LINC01556Q5JQF7 62 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 LINC00643Q86TS7 51 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 VPREB1P12018 145 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 Q8N9L7 120 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 C7orf33Q8WU49 177 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 DSCR8Q96T75 97 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 PPDPFQ9H3Y8 114 aa3.67□□□□□ -1.82
LIMA1-215ENST00000552823 WIPF1O43516 503 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 NDUFC2O95298 119 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 KRTAP26-1Q6PEX3 210 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 ST20-AS1Q8NBB2 130 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 A0A1B0GX51 115 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 LINC00528Q8N1L1 170 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 190.5 ms