RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ANAPC16Q96DE5 110 aa9.5□□□□□ -0.89
VPS29-204ENST00000548259 CFC1BP0CG36 223 aa9.49□□□□□ -0.89
VPS29-204ENST00000548259 PMVKQ15126 192 aa9.49□□□□□ -0.89
VPS29-204ENST00000548259 SFTA2Q6UW10 78 aa9.49□□□□□ -0.89
VPS29-204ENST00000548259 ADCYAP1P18509 176 aa9.47□□□□□ -0.89
VPS29-204ENST00000548259 RPS29P62273 56 aaKnown RBP9.45□□□□□ -0.9
VPS29-204ENST00000548259 IGLV5-39A0A0G2JS06 123 aa9.44□□□□□ -0.9
VPS29-204ENST00000548259 SLC25A20O43772 301 aa9.44□□□□□ -0.9
VPS29-204ENST00000548259 hCG_2014768A0A024R1R8 64 aa9.43□□□□□ -0.9
VPS29-204ENST00000548259 XP32Q5T750 250 aa9.43□□□□□ -0.9
VPS29-204ENST00000548259 PRYO14603 147 aa9.42□□□□□ -0.9
VPS29-204ENST00000548259 ZNF625Q96I27 306 aaPredicted RBP9.42□□□□□ -0.9
VPS29-204ENST00000548259 S100A12P80511 92 aa9.41□□□□□ -0.9
VPS29-204ENST00000548259 KIAA1644Q3SXP7 199 aa9.41□□□□□ -0.9
VPS29-204ENST00000548259 SSBP3-AS1Q7Z2R9 100 aa9.41□□□□□ -0.9
VPS29-204ENST00000548259 SMCR5Q8TEV8 140 aa9.41□□□□□ -0.9
VPS29-204ENST00000548259 ETDCA0A1B0GVM5 59 aa9.4□□□□□ -0.9
VPS29-204ENST00000548259 IGLC3P0DOY3 106 aa9.4□□□□□ -0.9
VPS29-204ENST00000548259 LINC00158P58513 81 aa9.4□□□□□ -0.9
VPS29-204ENST00000548259 Q8N377 158 aa9.4□□□□□ -0.9
VPS29-204ENST00000548259 SMCO4Q9NRQ5 59 aa9.4□□□□□ -0.9
VPS29-204ENST00000548259 ATP6V1G1O75348 118 aa9.39□□□□□ -0.91
VPS29-204ENST00000548259 NDUFA6P56556 154 aa9.39□□□□□ -0.91
VPS29-204ENST00000548259 MOBPQ13875 183 aa9.39□□□□□ -0.91
VPS29-204ENST00000548259 FA2HQ7L5A8 372 aa9.39□□□□□ -0.91
VPS29-204ENST00000548259 Q8NDZ9 215 aa9.39□□□□□ -0.91
VPS29-204ENST00000548259 IGLV9-49A0A0B4J1Y8 123 aa9.38□□□□□ -0.91
VPS29-204ENST00000548259 LINC01546A6NGU7 62 aa9.38□□□□□ -0.91
VPS29-204ENST00000548259 LINC00483Q53H64 154 aa9.38□□□□□ -0.91
VPS29-204ENST00000548259 GAGE2AQ6NT46 116 aa9.38□□□□□ -0.91
VPS29-204ENST00000548259 ZNF22P17026 224 aaPredicted RBP9.37□□□□□ -0.91
VPS29-204ENST00000548259 LCE2CQ5TA81 110 aa9.37□□□□□ -0.91
VPS29-204ENST00000548259 KCNQ1DNQ9H478 68 aa9.35□□□□□ -0.91
VPS29-204ENST00000548259 SPRR1AP35321 89 aa9.34□□□□□ -0.91
VPS29-204ENST00000548259 MT1HP80294 61 aa9.34□□□□□ -0.91
VPS29-204ENST00000548259 TMEM170BQ5T4T1 132 aa9.34□□□□□ -0.91
VPS29-204ENST00000548259 TRAV9-1A0A075B6T8 112 aa9.33□□□□□ -0.92
VPS29-204ENST00000548259 BOD1L2Q8IYS8 172 aa9.33□□□□□ -0.92
VPS29-204ENST00000548259 IGLV8-61A0A075B6I0 122 aa9.31□□□□□ -0.92
VPS29-204ENST00000548259 A0A0U1RRA0 63 aa9.31□□□□□ -0.92
VPS29-204ENST00000548259 NCR3O14931 201 aa9.3□□□□□ -0.92
VPS29-204ENST00000548259 KRTAP4-16G5E9R7 235 aaPredicted RBP9.29□□□□□ -0.92
VPS29-204ENST00000548259 LINC00587B1AMM8 73 aa9.28□□□□□ -0.92
VPS29-204ENST00000548259 M0R2T5 61 aa9.28□□□□□ -0.92
VPS29-204ENST00000548259 S100PP25815 95 aa9.28□□□□□ -0.92
VPS29-204ENST00000548259 PCOTHQ58A44 107 aa9.28□□□□□ -0.92
VPS29-204ENST00000548259 MEIG1Q5JSS6 88 aa9.28□□□□□ -0.92
VPS29-204ENST00000548259 C9orf153Q5TBE3 101 aa9.28□□□□□ -0.92
VPS29-204ENST00000548259 C11orf86A6NJI1 115 aa9.27□□□□□ -0.93
VPS29-204ENST00000548259 KRTAP19-2Q3LHN2 52 aa9.27□□□□□ -0.93
VPS29-204ENST00000548259 COX19Q49B96 90 aa9.27□□□□□ -0.93
VPS29-204ENST00000548259 BAGE3Q86Y29 109 aa9.27□□□□□ -0.93
VPS29-204ENST00000548259 TRBV10-3A0A0K0K1G6 114 aa9.26□□□□□ -0.93
VPS29-204ENST00000548259 B5MCH6 92 aa9.26□□□□□ -0.93
VPS29-204ENST00000548259 LORP23490 312 aaPredicted RBP9.26□□□□□ -0.93
VPS29-204ENST00000548259 SMIM13P0DJ93 91 aa9.25□□□□□ -0.93
VPS29-204ENST00000548259 KRTAP10-6P60371 365 aaPredicted RBP9.25□□□□□ -0.93
VPS29-204ENST00000548259 HBDP02042 147 aa9.24□□□□□ -0.93
VPS29-204ENST00000548259 HERV-K104P63124 156 aa9.24□□□□□ -0.93
VPS29-204ENST00000548259 FABP9Q0Z7S8 132 aa9.24□□□□□ -0.93
VPS29-204ENST00000548259 MIR7-3HGQ8N6C7 128 aa9.24□□□□□ -0.93
VPS29-204ENST00000548259 LIMD2Q9BT23 127 aa9.24□□□□□ -0.93
VPS29-204ENST00000548259 MAP1LC3CQ9BXW4 147 aa9.24□□□□□ -0.93
VPS29-204ENST00000548259 ERC2-IT1O76042 136 aa9.23□□□□□ -0.93
VPS29-204ENST00000548259 JOSD1Q15040 202 aaPredicted RBP9.22□□□□□ -0.93
VPS29-204ENST00000548259 DDTP30046 118 aa9.21□□□□□ -0.94
VPS29-204ENST00000548259 Q6ZRX8 168 aa9.21□□□□□ -0.94
VPS29-204ENST00000548259 SEC11CQ9BY50 192 aa9.21□□□□□ -0.94
VPS29-204ENST00000548259 CHTOPQ9Y3Y2 248 aaKnown RBP9.21□□□□□ -0.94
VPS29-204ENST00000548259 LINC00614P0C842 121 aa9.2□□□□□ -0.94
VPS29-204ENST00000548259 COX6B2Q6YFQ2 88 aa9.2□□□□□ -0.94
VPS29-204ENST00000548259 A0A096LNJ9 63 aa9.19□□□□□ -0.94
VPS29-204ENST00000548259 TMEM223A0PJW6 202 aa9.19□□□□□ -0.94
VPS29-204ENST00000548259 Q9BRP9 147 aa9.19□□□□□ -0.94
VPS29-204ENST00000548259 TRBV10-2A0A0K0K1G8 114 aa9.18□□□□□ -0.94
VPS29-204ENST00000548259 C9orf92A6NGG3 77 aa9.18□□□□□ -0.94
VPS29-204ENST00000548259 MYMXA0A1B0GTQ4 84 aa9.16□□□□□ -0.94
VPS29-204ENST00000548259 S100A7L2Q5SY68 101 aa9.16□□□□□ -0.94
VPS29-204ENST00000548259 SLC25A34Q6PIV7 304 aa9.16□□□□□ -0.94
VPS29-204ENST00000548259 C5orf52A6NGY3 159 aa9.15□□□□□ -0.94
VPS29-204ENST00000548259 PMCHL1Q16048 86 aa9.15□□□□□ -0.94
VPS29-204ENST00000548259 MIEN1Q9BRT3 115 aa9.15□□□□□ -0.94
VPS29-204ENST00000548259 SPANXB1Q9NS25 103 aaPredicted RBP9.14□□□□□ -0.95
VPS29-204ENST00000548259 IGLV6-57P01721 117 aa9.13□□□□□ -0.95
VPS29-204ENST00000548259 HINT1P49773 126 aaPredicted RBP9.13□□□□□ -0.95
VPS29-204ENST00000548259 C18orf32Q8TCD1 76 aa9.13□□□□□ -0.95
VPS29-204ENST00000548259 TRAV12-1A0A0B4J245 112 aa9.12□□□□□ -0.95
VPS29-204ENST00000548259 COMMD7Q86VX2 200 aa9.12□□□□□ -0.95
VPS29-204ENST00000548259 CBY1Q9Y3M2 126 aa9.12□□□□□ -0.95
VPS29-204ENST00000548259 LOC107984156A0A0G2JMH3 177 aa9.11□□□□□ -0.95
VPS29-204ENST00000548259 HRCT1Q6UXD1 115 aa9.11□□□□□ -0.95
VPS29-204ENST00000548259 ARL17AQ8IVW1 177 aa9.11□□□□□ -0.95
VPS29-204ENST00000548259 URB1-AS1Q96HZ7 61 aa9.11□□□□□ -0.95
VPS29-204ENST00000548259 TRAV23DV6A0A075B6W5 121 aa9.1□□□□□ -0.95
VPS29-204ENST00000548259 KRTAP9-7A8MTY7 169 aa9.1□□□□□ -0.95
VPS29-204ENST00000548259 IFITM2Q01629 132 aa9.1□□□□□ -0.95
VPS29-204ENST00000548259 UQCC3Q6UW78 93 aa9.09□□□□□ -0.95
VPS29-204ENST00000548259 TRAPPC1Q9Y5R8 145 aa9.09□□□□□ -0.95
VPS29-204ENST00000548259 TMEM218A2RU14 115 aa9.08□□□□□ -0.96
VPS29-204ENST00000548259 ZNF73O43830 326 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms