RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 IGKV2D-28P01615 120 aa8.87□□□□□ -0.99
PTCH1-215ENST00000547672 S100A7L2Q5SY68 101 aa8.87□□□□□ -0.99
PTCH1-215ENST00000547672 COL7A1Q02388 2944 aa8.87□□□□□ -0.99
PTCH1-215ENST00000547672 STAB2Q8WWQ8 2551 aa8.86□□□□□ -0.99
PTCH1-215ENST00000547672 M0QXV9 152 aa8.86□□□□□ -0.99
PTCH1-215ENST00000547672 LINC00337Q8N6G1 96 aa8.86□□□□□ -0.99
PTCH1-215ENST00000547672 WWC2-AS2Q96NR7 200 aa8.84□□□□□ -0.99
PTCH1-215ENST00000547672 DNAH9Q9NYC9 4486 aa8.84□□□□□ -1
PTCH1-215ENST00000547672 J3QR89 54 aa8.83□□□□□ -1
PTCH1-215ENST00000547672 LST1O00453 97 aa8.83□□□□□ -1
PTCH1-215ENST00000547672 TRACP01848 142 aa8.83□□□□□ -1
PTCH1-215ENST00000547672 LINC01620Q4KN68 170 aa8.83□□□□□ -1
PTCH1-215ENST00000547672 SMIM11BQ8TCY0 68 aa8.83□□□□□ -1
PTCH1-215ENST00000547672 LOC107984640A0A0U1RRK4 108 aa8.82□□□□□ -1
PTCH1-215ENST00000547672 A0A1B0GX51 115 aa8.82□□□□□ -1
PTCH1-215ENST00000547672 K7ERU9 68 aa8.82□□□□□ -1
PTCH1-215ENST00000547672 M0R378 163 aa8.82□□□□□ -1
PTCH1-215ENST00000547672 PLA2G2DQ9UNK4 145 aa8.82□□□□□ -1
PTCH1-215ENST00000547672 C9JAW5 83 aa8.81□□□□□ -1
PTCH1-215ENST00000547672 CNBPP62633 177 aaKnown RBP8.81□□□□□ -1
PTCH1-215ENST00000547672 LINC01600Q96MT4 127 aa8.81□□□□□ -1
PTCH1-215ENST00000547672 H3BT86 120 aa8.8□□□□□ -1
PTCH1-215ENST00000547672 SLC25A20O43772 301 aa8.8□□□□□ -1
PTCH1-215ENST00000547672 GAGE2EQ4V326 116 aa8.8□□□□□ -1
PTCH1-215ENST00000547672 GAGE2DQ9UEU5 116 aa8.8□□□□□ -1
PTCH1-215ENST00000547672 PRO0461Q9UI25 63 aa8.8□□□□□ -1
PTCH1-215ENST00000547672 TGP01266 2768 aa8.8□□□□□ -1
PTCH1-215ENST00000547672 DNAL4O96015 105 aa8.79□□□□□ -1
PTCH1-215ENST00000547672 WFDC2Q14508 124 aa8.79□□□□□ -1
PTCH1-215ENST00000547672 KRTAP1-5Q9BYS1 174 aa8.79□□□□□ -1
PTCH1-215ENST00000547672 XAGE1AQ9HD64 81 aa8.79□□□□□ -1
PTCH1-215ENST00000547672 C3orf84H3BNL1 204 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 NCR3O14931 201 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 GHRHP01286 108 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 IGLV6-57P01721 117 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 RPL18AQ02543 176 aaKnown RBP8.78□□□□□ -1
PTCH1-215ENST00000547672 Q6ZRP5 223 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 ANKRD29Q8N6D5 301 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 NKAPP1Q8N9T2 125 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 CLEC2BQ92478 149 aa8.78□□□□□ -1
PTCH1-215ENST00000547672 TRBV7-6A0A0J9YX20 115 aa8.77□□□□□ -1.01
PTCH1-215ENST00000547672 H3BQ85 93 aa8.77□□□□□ -1.01
PTCH1-215ENST00000547672 VPREB1P12018 145 aa8.77□□□□□ -1.01
PTCH1-215ENST00000547672 PRR3P79522 188 aaKnown RBP8.77□□□□□ -1.01
PTCH1-215ENST00000547672 CASC10Q5T4H9 136 aa8.77□□□□□ -1.01
PTCH1-215ENST00000547672 OCIAD2Q56VL3 154 aa8.76□□□□□ -1.01
PTCH1-215ENST00000547672 LECT2O14960 151 aa8.75□□□□□ -1.01
PTCH1-215ENST00000547672 SLPIP03973 132 aa8.75□□□□□ -1.01
PTCH1-215ENST00000547672 TEN1Q86WV5 123 aa8.75□□□□□ -1.01
PTCH1-215ENST00000547672 IGLV5-37A0A075B6J1 123 aa8.74□□□□□ -1.01
PTCH1-215ENST00000547672 ETDBQ3ZM63 59 aa8.74□□□□□ -1.01
PTCH1-215ENST00000547672 DIRC1Q969H9 104 aa8.74□□□□□ -1.01
PTCH1-215ENST00000547672 LINC00474Q9P2X8 69 aa8.74□□□□□ -1.01
PTCH1-215ENST00000547672 TRAV23DV6A0A075B6W5 121 aa8.73□□□□□ -1.01
PTCH1-215ENST00000547672 GAGE2BQ13066 116 aa8.73□□□□□ -1.01
PTCH1-215ENST00000547672 PPDPFLQ8WWR9 84 aa8.73□□□□□ -1.01
PTCH1-215ENST00000547672 TRBV10-3A0A0K0K1G6 114 aa8.72□□□□□ -1.01
PTCH1-215ENST00000547672 C16orf90A8MZG2 172 aa8.72□□□□□ -1.01
PTCH1-215ENST00000547672 BAALC-AS2P0C853 105 aa8.72□□□□□ -1.01
PTCH1-215ENST00000547672 C6orf99Q4VX62 202 aa8.72□□□□□ -1.01
PTCH1-215ENST00000547672 C9orf129Q5T035 196 aaKnown RBP8.72□□□□□ -1.01
PTCH1-215ENST00000547672 Q6ZR54 194 aa8.72□□□□□ -1.01
PTCH1-215ENST00000547672 LRCOL1A6NCL2 159 aa8.71□□□□□ -1.02
PTCH1-215ENST00000547672 SMCPP49901 116 aaPredicted RBP8.71□□□□□ -1.02
PTCH1-215ENST00000547672 C1orf134Q5TEV5 83 aa8.71□□□□□ -1.02
PTCH1-215ENST00000547672 ZNF73O43830 326 aaPredicted RBP8.7□□□□□ -1.02
PTCH1-215ENST00000547672 Q6ZRN7 208 aaPredicted RBP8.7□□□□□ -1.02
PTCH1-215ENST00000547672 MTURNQ8N3F0 131 aa8.7□□□□□ -1.02
PTCH1-215ENST00000547672 C9orf163Q8N9P6 203 aa8.7□□□□□ -1.02
PTCH1-215ENST00000547672 Q8NDZ9 215 aa8.7□□□□□ -1.02
PTCH1-215ENST00000547672 DYNC2H1Q8NCM8 4307 aaKnown RBP8.7□□□□□ -1.02
PTCH1-215ENST00000547672 M0R2N4 97 aa8.69□□□□□ -1.02
PTCH1-215ENST00000547672 LY6G6CO95867 125 aa8.69□□□□□ -1.02
PTCH1-215ENST00000547672 COX7BP24311 80 aa8.69□□□□□ -1.02
PTCH1-215ENST00000547672 Q8N814 137 aa8.69□□□□□ -1.02
PTCH1-215ENST00000547672 ORMDL1Q9P0S3 153 aa8.69□□□□□ -1.02
PTCH1-215ENST00000547672 hADV29S1A0JD25 119 aa8.68□□□□□ -1.02
PTCH1-215ENST00000547672 INAFM2P0DMQ5 153 aa8.68□□□□□ -1.02
PTCH1-215ENST00000547672 LINC00575Q6W349 94 aa8.68□□□□□ -1.02
PTCH1-215ENST00000547672 KCNQ1DNQ9H478 68 aa8.68□□□□□ -1.02
PTCH1-215ENST00000547672 TMEM256-PLSCR3K7ERE1 68 aa8.67□□□□□ -1.02
PTCH1-215ENST00000547672 FAM218AQ96MZ4 157 aa8.67□□□□□ -1.02
PTCH1-215ENST00000547672 A0A087WYN8 130 aa8.66□□□□□ -1.02
PTCH1-215ENST00000547672 PRYO14603 147 aa8.66□□□□□ -1.02
PTCH1-215ENST00000547672 LINC00476Q8WZB0 136 aa8.66□□□□□ -1.02
PTCH1-215ENST00000547672 LINC00167Q96N53 147 aa8.66□□□□□ -1.02
PTCH1-215ENST00000547672 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.65□□□□□ -1.02
PTCH1-215ENST00000547672 A0A087WTM6 91 aa8.65□□□□□ -1.02
PTCH1-215ENST00000547672 MRPL55Q7Z7F7 128 aaKnown RBP8.65□□□□□ -1.02
PTCH1-215ENST00000547672 C7orf33Q8WU49 177 aa8.65□□□□□ -1.02
PTCH1-215ENST00000547672 C22orf24Q9Y442 160 aa8.65□□□□□ -1.02
PTCH1-215ENST00000547672 ELOF1P60002 83 aaKnown RBP8.64□□□□□ -1.03
PTCH1-215ENST00000547672 SERTAD4-AS1Q5TG53 156 aa8.64□□□□□ -1.03
PTCH1-215ENST00000547672 IGLV1-50A0A075B6I6 118 aa8.63□□□□□ -1.03
PTCH1-215ENST00000547672 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.63□□□□□ -1.03
PTCH1-215ENST00000547672 JMJD7-PLA2G4BH0Y9G9 81 aa8.62□□□□□ -1.03
PTCH1-215ENST00000547672 DHRS4-AS1Q9P1J3 65 aa8.62□□□□□ -1.03
PTCH1-215ENST00000547672 A0A096LNI7 61 aa8.61□□□□□ -1.03
PTCH1-215ENST00000547672 ETDCA0A1B0GVM5 59 aa8.61□□□□□ -1.03
PTCH1-215ENST00000547672 C21orf62-AS1Q17RA5 79 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms