RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 WFDC9Q8NEX5 89 aa10.69□□□□□ -0.7
LDLR-204ENST00000545707 C2orf48Q96LS8 159 aa10.69□□□□□ -0.7
LDLR-204ENST00000545707 RPL18AQ02543 176 aaKnown RBP10.68□□□□□ -0.7
LDLR-204ENST00000545707 TMEM256-PLSCR3K7ERE1 68 aa10.68□□□□□ -0.7
LDLR-204ENST00000545707 COX7CP15954 63 aa10.67□□□□□ -0.7
LDLR-204ENST00000545707 A0A1B0GX51 115 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 ENHOQ6UWT2 76 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 XAGE1AQ9HD64 81 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 JMJD7-PLA2G4BH0Y9G9 81 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 SPART-AS1P0CW21 52 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 LELP1Q5T871 98 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 LINC00575Q6W349 94 aa10.66□□□□□ -0.7
LDLR-204ENST00000545707 CYSTM1Q9H1C7 97 aa10.65□□□□□ -0.7
LDLR-204ENST00000545707 ATOX1O00244 68 aa10.65□□□□□ -0.71
LDLR-204ENST00000545707 MIFP14174 115 aa10.64□□□□□ -0.71
LDLR-204ENST00000545707 IGHV4-30-4P0DP06 118 aa10.64□□□□□ -0.71
LDLR-204ENST00000545707 hADV29S1A0JD25 119 aa10.63□□□□□ -0.71
LDLR-204ENST00000545707 PRR34Q9NV39 138 aa10.63□□□□□ -0.71
LDLR-204ENST00000545707 M0R2N4 97 aa10.62□□□□□ -0.71
LDLR-204ENST00000545707 A0A0J9YWU9 116 aa10.62□□□□□ -0.71
LDLR-204ENST00000545707 USP17L23D6RBM5 183 aa10.62□□□□□ -0.71
LDLR-204ENST00000545707 FAM19A1Q7Z5A9 133 aa10.62□□□□□ -0.71
LDLR-204ENST00000545707 C6orf48Q9UBA6 75 aa10.62□□□□□ -0.71
LDLR-204ENST00000545707 LYPD5Q6UWN5 251 aa10.61□□□□□ -0.71
LDLR-204ENST00000545707 LAMTOR3Q9UHA4 124 aa10.61□□□□□ -0.71
LDLR-204ENST00000545707 TRBV10-3A0A0K0K1G6 114 aa10.6□□□□□ -0.71
LDLR-204ENST00000545707 HIGD2BQ4VC39 106 aa10.6□□□□□ -0.71
LDLR-204ENST00000545707 IGLV6-57P01721 117 aa10.6□□□□□ -0.71
LDLR-204ENST00000545707 Q6ZQY7 126 aa10.59□□□□□ -0.71
LDLR-204ENST00000545707 RETNQ9HD89 108 aa10.59□□□□□ -0.71
LDLR-204ENST00000545707 RBM3P98179 157 aaKnown RBP10.58□□□□□ -0.72
LDLR-204ENST00000545707 WFDC10BQ8IUB3 73 aa10.58□□□□□ -0.72
LDLR-204ENST00000545707 TRAV23DV6A0A075B6W5 121 aa10.57□□□□□ -0.72
LDLR-204ENST00000545707 CRYGAP11844 174 aa10.57□□□□□ -0.72
LDLR-204ENST00000545707 SVIPQ8NHG7 77 aa10.57□□□□□ -0.72
LDLR-204ENST00000545707 Q6ZQT0 140 aa10.56□□□□□ -0.72
LDLR-204ENST00000545707 SERP2Q8N6R1 65 aa10.56□□□□□ -0.72
LDLR-204ENST00000545707 ANK2Q01484 3957 aa10.56□□□□□ -0.72
LDLR-204ENST00000545707 LOC107984640A0A0U1RRK4 108 aa10.55□□□□□ -0.72
LDLR-204ENST00000545707 ZNF561-AS1K7EIQ3 104 aa10.55□□□□□ -0.72
LDLR-204ENST00000545707 UBL5Q9BZL1 73 aa10.55□□□□□ -0.72
LDLR-204ENST00000545707 TENM3Q9P273 2699 aa10.55□□□□□ -0.72
LDLR-204ENST00000545707 OXLD1Q5BKU9 147 aa10.53□□□□□ -0.72
LDLR-204ENST00000545707 KPRPQ5T749 579 aaPredicted RBP10.53□□□□□ -0.72
LDLR-204ENST00000545707 CAMK2N2Q96S95 79 aa10.53□□□□□ -0.72
LDLR-204ENST00000545707 UPK3BQ9BT76 320 aa10.53□□□□□ -0.72
LDLR-204ENST00000545707 GVQW2A0A096LPI5 108 aaPredicted RBP10.52□□□□□ -0.73
LDLR-204ENST00000545707 GHRHP01286 108 aa10.52□□□□□ -0.73
LDLR-204ENST00000545707 DIRC1Q969H9 104 aa10.52□□□□□ -0.73
LDLR-204ENST00000545707 ZNF73O43830 326 aaPredicted RBP10.51□□□□□ -0.73
LDLR-204ENST00000545707 Q6ZTC4 211 aa10.51□□□□□ -0.73
LDLR-204ENST00000545707 Q6ZRU5 148 aa10.5□□□□□ -0.73
LDLR-204ENST00000545707 HAMPP81172 84 aa10.5□□□□□ -0.73
LDLR-204ENST00000545707 MUC7Q8TAX7 377 aa10.5□□□□□ -0.73
LDLR-204ENST00000545707 DSCR8Q96T75 97 aa10.5□□□□□ -0.73
LDLR-204ENST00000545707 LOC110117498A0A087WWA1 95 aa10.49□□□□□ -0.73
LDLR-204ENST00000545707 ATP5EP2Q5VTU8 51 aa10.48□□□□□ -0.73
LDLR-204ENST00000545707 KRTAP26-1Q6PEX3 210 aa10.48□□□□□ -0.73
LDLR-204ENST00000545707 VPREB1P12018 145 aa10.48□□□□□ -0.73
LDLR-204ENST00000545707 COX7BP24311 80 aa10.48□□□□□ -0.73
LDLR-204ENST00000545707 C15orf56Q8N910 161 aa10.47□□□□□ -0.73
LDLR-204ENST00000545707 LINC01547P58512 204 aaPredicted RBP10.47□□□□□ -0.73
LDLR-204ENST00000545707 KRTAP10-11P60412 298 aa10.47□□□□□ -0.73
LDLR-204ENST00000545707 ESRGQ1W209 222 aa10.47□□□□□ -0.73
LDLR-204ENST00000545707 Q6ZVQ6 151 aa10.47□□□□□ -0.73
LDLR-204ENST00000545707 ELOF1P60002 83 aaKnown RBP10.45□□□□□ -0.74
LDLR-204ENST00000545707 SCXQ7RTU7 201 aa10.45□□□□□ -0.74
LDLR-204ENST00000545707 STAB1Q9NY15 2570 aa10.44□□□□□ -0.74
LDLR-204ENST00000545707 EGFEM1PQ0D2K5 195 aa10.43□□□□□ -0.74
LDLR-204ENST00000545707 Q6ZRP5 223 aa10.43□□□□□ -0.74
LDLR-204ENST00000545707 FLNBO75369 2602 aaKnown RBP10.43□□□□□ -0.74
LDLR-204ENST00000545707 IGKV2D-24A0A075B6R9 120 aa10.42□□□□□ -0.74
LDLR-204ENST00000545707 WIPF1O43516 503 aa10.42□□□□□ -0.74
LDLR-204ENST00000545707 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.42□□□□□ -0.74
LDLR-204ENST00000545707 NDUFC2-KCTD14E9PQ53 114 aa10.42□□□□□ -0.74
LDLR-204ENST00000545707 M0R378 163 aa10.42□□□□□ -0.74
LDLR-204ENST00000545707 MAST4O15021 2626 aa10.41□□□□□ -0.74
LDLR-204ENST00000545707 TRAV10A0A0B4J240 114 aa10.41□□□□□ -0.74
LDLR-204ENST00000545707 C20orf197Q8N268 126 aa10.41□□□□□ -0.74
LDLR-204ENST00000545707 FBN1P35555 2871 aaKnown RBP10.41□□□□□ -0.74
LDLR-204ENST00000545707 J3KT08 172 aa10.41□□□□□ -0.74
LDLR-204ENST00000545707 C1orf43Q9BWL3 253 aa10.41□□□□□ -0.74
LDLR-204ENST00000545707 NOTCH1P46531 2555 aa10.4□□□□□ -0.74
LDLR-204ENST00000545707 TRBV7-4A0A0J9YYF1 115 aa10.4□□□□□ -0.74
LDLR-204ENST00000545707 DPH3Q96FX2 82 aa10.39□□□□□ -0.75
LDLR-204ENST00000545707 TMEM258P61165 79 aa10.38□□□□□ -0.75
LDLR-204ENST00000545707 LINC00528Q8N1L1 170 aa10.38□□□□□ -0.75
LDLR-204ENST00000545707 PDE6GP18545 87 aa10.37□□□□□ -0.75
LDLR-204ENST00000545707 FAM19A5Q7Z5A7 132 aaPredicted RBP10.37□□□□□ -0.75
LDLR-204ENST00000545707 H3BNG1 76 aa10.37□□□□□ -0.75
LDLR-204ENST00000545707 DEFB131BA0A096LNP1 70 aa10.36□□□□□ -0.75
LDLR-204ENST00000545707 OXTP01178 125 aa10.36□□□□□ -0.75
LDLR-204ENST00000545707 SERTAD4-AS1Q5TG53 156 aa10.35□□□□□ -0.75
LDLR-204ENST00000545707 DEFB105AQ8NG35 78 aa10.35□□□□□ -0.75
LDLR-204ENST00000545707 F8P00451 2351 aa10.35□□□□□ -0.75
LDLR-204ENST00000545707 TRBV7-6A0A0J9YX20 115 aa10.35□□□□□ -0.75
LDLR-204ENST00000545707 SYCNQ0VAF6 134 aa10.35□□□□□ -0.75
LDLR-204ENST00000545707 H3BQ85 93 aa10.34□□□□□ -0.75
LDLR-204ENST00000545707 CMYA5Q8N3K9 4069 aa10.34□□□□□ -0.75
LDLR-204ENST00000545707 Q8N9L7 120 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms