RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 A0A1B0GX51 115 aa10.19□□□□□ -0.78
USP28-214ENST00000545540 hADV29S1A0JD25 119 aa10.19□□□□□ -0.78
USP28-214ENST00000545540 TMEM126AQ9H061 195 aa10.19□□□□□ -0.78
USP28-214ENST00000545540 FAM19A1Q7Z5A9 133 aa10.18□□□□□ -0.78
USP28-214ENST00000545540 KMT2BQ9UMN6 2715 aaPredicted RBP10.18□□□□□ -0.78
USP28-214ENST00000545540 OXLD1Q5BKU9 147 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 Q8NAQ8 132 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 IGHV4-30-4P0DP06 118 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 C9orf66Q5T8R8 295 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 IMUPQ9GZP8 106 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 LYRM9A8MSI8 78 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 LINC01561Q8N1V8 128 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 C3orf22Q8N5N4 141 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 LAMTOR3Q9UHA4 124 aa10.17□□□□□ -0.78
USP28-214ENST00000545540 TRAV23DV6A0A075B6W5 121 aa10.16□□□□□ -0.78
USP28-214ENST00000545540 LOC107984640A0A0U1RRK4 108 aa10.16□□□□□ -0.78
USP28-214ENST00000545540 SMIM9A6NGZ8 99 aa10.16□□□□□ -0.78
USP28-214ENST00000545540 ENHOQ6UWT2 76 aa10.16□□□□□ -0.78
USP28-214ENST00000545540 WFDC10BQ8IUB3 73 aa10.15□□□□□ -0.78
USP28-214ENST00000545540 OBSCN-AS1Q96MR7 158 aa10.15□□□□□ -0.78
USP28-214ENST00000545540 SPART-AS1P0CW21 52 aa10.14□□□□□ -0.79
USP28-214ENST00000545540 APOC4P55056 127 aa10.13□□□□□ -0.79
USP28-214ENST00000545540 Q6ZQY7 126 aa10.13□□□□□ -0.79
USP28-214ENST00000545540 TRBV10-3A0A0K0K1G6 114 aa10.13□□□□□ -0.79
USP28-214ENST00000545540 CCKP06307 115 aa10.13□□□□□ -0.79
USP28-214ENST00000545540 CSMD3Q7Z407 3707 aa10.12□□□□□ -0.79
USP28-214ENST00000545540 PPDPFQ9H3Y8 114 aa10.12□□□□□ -0.79
USP28-214ENST00000545540 C2orf48Q96LS8 159 aa10.11□□□□□ -0.79
USP28-214ENST00000545540 C6orf48Q9UBA6 75 aa10.11□□□□□ -0.79
USP28-214ENST00000545540 UQCRQO14949 82 aa10.11□□□□□ -0.79
USP28-214ENST00000545540 USP17L23D6RBM5 183 aa10.11□□□□□ -0.79
USP28-214ENST00000545540 TMEM256-PLSCR3K7ERE1 68 aa10.11□□□□□ -0.79
USP28-214ENST00000545540 SCXQ7RTU7 201 aa10.1□□□□□ -0.79
USP28-214ENST00000545540 COX7CP15954 63 aa10.1□□□□□ -0.79
USP28-214ENST00000545540 LINC00575Q6W349 94 aa10.1□□□□□ -0.79
USP28-214ENST00000545540 LYPD5Q6UWN5 251 aa10.1□□□□□ -0.79
USP28-214ENST00000545540 HAMPP81172 84 aa10.09□□□□□ -0.79
USP28-214ENST00000545540 LELP1Q5T871 98 aa10.09□□□□□ -0.79
USP28-214ENST00000545540 COX17Q14061 63 aa10.08□□□□□ -0.8
USP28-214ENST00000545540 Q6ZTC4 211 aa10.08□□□□□ -0.8
USP28-214ENST00000545540 NDUFC2O95298 119 aa10.08□□□□□ -0.8
USP28-214ENST00000545540 Q6JHZ5 121 aa10.08□□□□□ -0.8
USP28-214ENST00000545540 MIFP14174 115 aa10.06□□□□□ -0.8
USP28-214ENST00000545540 RBM3P98179 157 aaKnown RBP10.06□□□□□ -0.8
USP28-214ENST00000545540 ZNF561-AS1K7EIQ3 104 aa10.06□□□□□ -0.8
USP28-214ENST00000545540 CAMK2N2Q96S95 79 aa10.06□□□□□ -0.8
USP28-214ENST00000545540 ATOX1O00244 68 aa10.05□□□□□ -0.8
USP28-214ENST00000545540 KPRPQ5T749 579 aaPredicted RBP10.05□□□□□ -0.8
USP28-214ENST00000545540 JMJD7-PLA2G4BH0Y9G9 81 aa10.05□□□□□ -0.8
USP28-214ENST00000545540 PRB2P02812 416 aaPredicted RBP10.05□□□□□ -0.8
USP28-214ENST00000545540 LINC00167Q96N53 147 aa10.04□□□□□ -0.8
USP28-214ENST00000545540 Q6ZRU5 148 aa10.04□□□□□ -0.8
USP28-214ENST00000545540 MGAM2Q2M2H8 2515 aa10.03□□□□□ -0.8
USP28-214ENST00000545540 GHRHP01286 108 aa10.03□□□□□ -0.8
USP28-214ENST00000545540 UBL5Q9BZL1 73 aa10.03□□□□□ -0.8
USP28-214ENST00000545540 PRR34Q9NV39 138 aa10.03□□□□□ -0.8
USP28-214ENST00000545540 IGLV6-57P01721 117 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 DSCR8Q96T75 97 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 UPK3BQ9BT76 320 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 IGKV2D-24A0A075B6R9 120 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 KRTAP10-11P60412 298 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 A0A0J9YWU9 116 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 Q6ZQT0 140 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 DEFB105AQ8NG35 78 aa10.01□□□□□ -0.81
USP28-214ENST00000545540 TENM2Q9NT68 2774 aa10□□□□□ -0.81
USP28-214ENST00000545540 ESRGQ1W209 222 aa10□□□□□ -0.81
USP28-214ENST00000545540 ZNF73O43830 326 aaPredicted RBP10□□□□□ -0.81
USP28-214ENST00000545540 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10□□□□□ -0.81
USP28-214ENST00000545540 SERP2Q8N6R1 65 aa10□□□□□ -0.81
USP28-214ENST00000545540 DIRC1Q969H9 104 aa9.99□□□□□ -0.81
USP28-214ENST00000545540 C20orf197Q8N268 126 aa9.98□□□□□ -0.81
USP28-214ENST00000545540 Q8N9L7 120 aa9.98□□□□□ -0.81
USP28-214ENST00000545540 TRAV10A0A0B4J240 114 aa9.96□□□□□ -0.81
USP28-214ENST00000545540 Q6ZRP5 223 aa9.96□□□□□ -0.81
USP28-214ENST00000545540 Q6ZVQ6 151 aa9.96□□□□□ -0.81
USP28-214ENST00000545540 CRYGAP11844 174 aa9.96□□□□□ -0.82
USP28-214ENST00000545540 SRRM2Q9UQ35 2752 aaKnown RBP9.96□□□□□ -0.82
USP28-214ENST00000545540 COX7BP24311 80 aa9.95□□□□□ -0.82
USP28-214ENST00000545540 LINC01547P58512 204 aaPredicted RBP9.95□□□□□ -0.82
USP28-214ENST00000545540 C15orf56Q8N910 161 aa9.95□□□□□ -0.82
USP28-214ENST00000545540 RPL37AP8A6NKH3 93 aa9.94□□□□□ -0.82
USP28-214ENST00000545540 VPREB1P12018 145 aa9.94□□□□□ -0.82
USP28-214ENST00000545540 MUC7Q8TAX7 377 aa9.93□□□□□ -0.82
USP28-214ENST00000545540 STAB2Q8WWQ8 2551 aa9.93□□□□□ -0.82
USP28-214ENST00000545540 C1orf43Q9BWL3 253 aa9.93□□□□□ -0.82
USP28-214ENST00000545540 SNURFQ9Y675 71 aa9.93□□□□□ -0.82
USP28-214ENST00000545540 CASC10Q5T4H9 136 aa9.92□□□□□ -0.82
USP28-214ENST00000545540 LYSTQ99698 3801 aa9.92□□□□□ -0.82
USP28-214ENST00000545540 MRAPQ8TCY5 172 aa9.92□□□□□ -0.82
USP28-214ENST00000545540 C3orf84H3BNL1 204 aa9.91□□□□□ -0.82
USP28-214ENST00000545540 KRTAP26-1Q6PEX3 210 aa9.91□□□□□ -0.82
USP28-214ENST00000545540 FAM168BA1KXE4 195 aa9.91□□□□□ -0.82
USP28-214ENST00000545540 DEFB131BA0A096LNP1 70 aa9.9□□□□□ -0.82
USP28-214ENST00000545540 SERTAD4-AS1Q5TG53 156 aa9.9□□□□□ -0.82
USP28-214ENST00000545540 FAM19A5Q7Z5A7 132 aaPredicted RBP9.9□□□□□ -0.82
USP28-214ENST00000545540 OXTP01178 125 aa9.89□□□□□ -0.83
USP28-214ENST00000545540 SVIPQ8NHG7 77 aa9.89□□□□□ -0.83
USP28-214ENST00000545540 NDUFC2-KCTD14E9PQ53 114 aa9.88□□□□□ -0.83
USP28-214ENST00000545540 ELOF1P60002 83 aaKnown RBP9.88□□□□□ -0.83
USP28-214ENST00000545540 GVQW2A0A096LPI5 108 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms