RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 LINC00167Q96N53 147 aa12.1□□□□□ -0.47
VIM-209ENST00000544301 GAGE2AQ6NT46 116 aa12.1□□□□□ -0.47
VIM-209ENST00000544301 ORMDL1Q9P0S3 153 aa12.1□□□□□ -0.47
VIM-209ENST00000544301 STAB1Q9NY15 2570 aa12.09□□□□□ -0.47
VIM-209ENST00000544301 A0A1B0GX51 115 aa12.09□□□□□ -0.47
VIM-209ENST00000544301 NDUFV3P56181 108 aaKnown RBP12.09□□□□□ -0.47
VIM-209ENST00000544301 SDIM1Q6ZPB5 146 aa12.09□□□□□ -0.47
VIM-209ENST00000544301 Q8N814 137 aa12.08□□□□□ -0.47
VIM-209ENST00000544301 TRBV7-7A0A0K0K1E9 115 aa12.08□□□□□ -0.48
VIM-209ENST00000544301 S100A7L2Q5SY68 101 aa12.08□□□□□ -0.48
VIM-209ENST00000544301 C6orf48Q9UBA6 75 aa12.08□□□□□ -0.48
VIM-209ENST00000544301 FLNBO75369 2602 aaKnown RBP12.08□□□□□ -0.48
VIM-209ENST00000544301 KRTAP26-1Q6PEX3 210 aa12.07□□□□□ -0.48
VIM-209ENST00000544301 C14orf132Q9NPU4 83 aa12.07□□□□□ -0.48
VIM-209ENST00000544301 TENM3Q9P273 2699 aa12.07□□□□□ -0.48
VIM-209ENST00000544301 NHLRC4P0CG21 123 aaPredicted RBP12.07□□□□□ -0.48
VIM-209ENST00000544301 ESRGQ1W209 222 aa12.07□□□□□ -0.48
VIM-209ENST00000544301 C6orf99Q4VX62 202 aa12.06□□□□□ -0.48
VIM-209ENST00000544301 LINC00643Q86TS7 51 aa12.06□□□□□ -0.48
VIM-209ENST00000544301 DEFB131BA0A096LNP1 70 aa12.03□□□□□ -0.48
VIM-209ENST00000544301 IGLV6-57P01721 117 aa12.03□□□□□ -0.48
VIM-209ENST00000544301 HIGD2BQ4VC39 106 aa12.03□□□□□ -0.48
VIM-209ENST00000544301 RPL18AQ02543 176 aaKnown RBP12.02□□□□□ -0.48
VIM-209ENST00000544301 C11orf45Q8TAV5 145 aa12.02□□□□□ -0.48
VIM-209ENST00000544301 ZNF561-AS1K7EIQ3 104 aa12.02□□□□□ -0.49
VIM-209ENST00000544301 IMUPQ9GZP8 106 aa12.01□□□□□ -0.49
VIM-209ENST00000544301 LINC00575Q6W349 94 aa12.01□□□□□ -0.49
VIM-209ENST00000544301 XAGE1AQ9HD64 81 aa12.01□□□□□ -0.49
VIM-209ENST00000544301 MAST4O15021 2626 aa12□□□□□ -0.49
VIM-209ENST00000544301 CAMK2N2Q96S95 79 aa12□□□□□ -0.49
VIM-209ENST00000544301 TMEM256-PLSCR3K7ERE1 68 aa11.99□□□□□ -0.49
VIM-209ENST00000544301 C15orf56Q8N910 161 aa11.99□□□□□ -0.49
VIM-209ENST00000544301 LINC01556Q5JQF7 62 aa11.99□□□□□ -0.49
VIM-209ENST00000544301 JMJD7-PLA2G4BH0Y9G9 81 aa11.96□□□□□ -0.49
VIM-209ENST00000544301 Q6ZRU5 148 aa11.96□□□□□ -0.49
VIM-209ENST00000544301 C1orf43Q9BWL3 253 aa11.96□□□□□ -0.49
VIM-209ENST00000544301 TRBV10-3A0A0K0K1G6 114 aa11.96□□□□□ -0.5
VIM-209ENST00000544301 hADV29S1A0JD25 119 aa11.95□□□□□ -0.5
VIM-209ENST00000544301 C2orf48Q96LS8 159 aa11.95□□□□□ -0.5
VIM-209ENST00000544301 LINC00846Q9NV44 126 aa11.95□□□□□ -0.5
VIM-209ENST00000544301 CCKP06307 115 aa11.94□□□□□ -0.5
VIM-209ENST00000544301 TRAV23DV6A0A075B6W5 121 aa11.93□□□□□ -0.5
VIM-209ENST00000544301 IGKV2D-24A0A075B6R9 120 aa11.93□□□□□ -0.5
VIM-209ENST00000544301 NOTCH1P46531 2555 aa11.93□□□□□ -0.5
VIM-209ENST00000544301 FAM236AA0A1B0GUQ0 79 aa11.92□□□□□ -0.5
VIM-209ENST00000544301 FAM236BA0A1B0GV22 79 aa11.92□□□□□ -0.5
VIM-209ENST00000544301 VPREB1P12018 145 aa11.92□□□□□ -0.5
VIM-209ENST00000544301 BAHCC1Q9P281 2608 aa11.91□□□□□ -0.5
VIM-209ENST00000544301 NDUFC2-KCTD14E9PQ53 114 aa11.91□□□□□ -0.5
VIM-209ENST00000544301 DNAH10OSP0CZ25 163 aa11.9□□□□□ -0.5
VIM-209ENST00000544301 DIRC1Q969H9 104 aa11.9□□□□□ -0.5
VIM-209ENST00000544301 CCDC179H3BU77 68 aa11.9□□□□□ -0.5
VIM-209ENST00000544301 PRB2P02812 416 aaPredicted RBP11.9□□□□□ -0.5
VIM-209ENST00000544301 TRAV10A0A0B4J240 114 aa11.89□□□□□ -0.51
VIM-209ENST00000544301 ZNF73O43830 326 aaPredicted RBP11.89□□□□□ -0.51
VIM-209ENST00000544301 F8WDY8 70 aa11.88□□□□□ -0.51
VIM-209ENST00000544301 M0R378 163 aa11.87□□□□□ -0.51
VIM-209ENST00000544301 Q6JHZ5 121 aa11.87□□□□□ -0.51
VIM-209ENST00000544301 Q6ZQY7 126 aa11.87□□□□□ -0.51
VIM-209ENST00000544301 Q6ZRP5 223 aa11.87□□□□□ -0.51
VIM-209ENST00000544301 COL6A5A8TX70 2615 aa11.86□□□□□ -0.51
VIM-209ENST00000544301 COX7BP24311 80 aa11.86□□□□□ -0.51
VIM-209ENST00000544301 SYCNQ0VAF6 134 aa11.86□□□□□ -0.51
VIM-209ENST00000544301 TM2D3Q9BRN9 247 aa11.86□□□□□ -0.51
VIM-209ENST00000544301 NBEAL1Q6ZS30 2694 aa11.85□□□□□ -0.51
VIM-209ENST00000544301 IGKV3D-7A0A0C4DH55 119 aa11.85□□□□□ -0.51
VIM-209ENST00000544301 LINC00588Q9Y4M8 146 aa11.85□□□□□ -0.51
VIM-209ENST00000544301 TRBV7-6A0A0J9YX20 115 aa11.84□□□□□ -0.51
VIM-209ENST00000544301 B5MCH6 92 aa11.84□□□□□ -0.51
VIM-209ENST00000544301 ELOF1P60002 83 aaKnown RBP11.84□□□□□ -0.51
VIM-209ENST00000544301 RBM3P98179 157 aaKnown RBP11.83□□□□□ -0.52
VIM-209ENST00000544301 LAMTOR3Q9UHA4 124 aa11.83□□□□□ -0.52
VIM-209ENST00000544301 HUWE1Q7Z6Z7 4374 aaKnown RBP11.83□□□□□ -0.52
VIM-209ENST00000544301 H3BQ85 93 aa11.83□□□□□ -0.52
VIM-209ENST00000544301 K7EIL1 84 aa11.83□□□□□ -0.52
VIM-209ENST00000544301 MRAPQ8TCY5 172 aa11.83□□□□□ -0.52
VIM-209ENST00000544301 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.81□□□□□ -0.52
VIM-209ENST00000544301 Q6ZQT0 140 aa11.81□□□□□ -0.52
VIM-209ENST00000544301 DNAH1Q9P2D7 4330 aa11.8□□□□□ -0.52
VIM-209ENST00000544301 LOC110117498A0A087WWA1 95 aa11.8□□□□□ -0.52
VIM-209ENST00000544301 HIST1H4AP62805 103 aaKnown RBP11.8□□□□□ -0.52
VIM-209ENST00000544301 CASC10Q5T4H9 136 aa11.77□□□□□ -0.53
VIM-209ENST00000544301 LINC00528Q8N1L1 170 aa11.77□□□□□ -0.53
VIM-209ENST00000544301 USP17L23D6RBM5 183 aa11.75□□□□□ -0.53
VIM-209ENST00000544301 SERTAD4-AS1Q5TG53 156 aa11.75□□□□□ -0.53
VIM-209ENST00000544301 DSCR8Q96T75 97 aa11.75□□□□□ -0.53
VIM-209ENST00000544301 TLX1NBP0CAT3 122 aa11.75□□□□□ -0.53
VIM-209ENST00000544301 A0A087WVE0 104 aa11.74□□□□□ -0.53
VIM-209ENST00000544301 M0R2N4 97 aa11.74□□□□□ -0.53
VIM-209ENST00000544301 GHRHP01286 108 aa11.74□□□□□ -0.53
VIM-209ENST00000544301 NKAPP1Q8N9T2 125 aa11.74□□□□□ -0.53
VIM-209ENST00000544301 UBL5Q9BZL1 73 aa11.74□□□□□ -0.53
VIM-209ENST00000544301 ATP5EP2Q5VTU8 51 aa11.73□□□□□ -0.53
VIM-209ENST00000544301 SS18L2Q9UHA2 77 aa11.73□□□□□ -0.53
VIM-209ENST00000544301 ATOX1O00244 68 aa11.72□□□□□ -0.53
VIM-209ENST00000544301 PDE6GP18545 87 aa11.72□□□□□ -0.53
VIM-209ENST00000544301 C7orf33Q8WU49 177 aa11.72□□□□□ -0.53
VIM-209ENST00000544301 KCNQ1DNQ9H478 68 aa11.72□□□□□ -0.53
VIM-209ENST00000544301 RMI2Q96E14 147 aa11.71□□□□□ -0.53
VIM-209ENST00000544301 UPK3BQ9BT76 320 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms