RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 PMCHL2Q9BQD1 86 aa7.73□□□□□ -1.17
VPS33A-207ENST00000542790 KRTAP9-3Q9BYQ3 159 aa7.73□□□□□ -1.17
VPS33A-207ENST00000542790 ERG28Q9UKR5 140 aa7.73□□□□□ -1.17
VPS33A-207ENST00000542790 HERVK_113P61574 105 aa7.72□□□□□ -1.17
VPS33A-207ENST00000542790 PRR3P79522 188 aaKnown RBP7.72□□□□□ -1.17
VPS33A-207ENST00000542790 PET117Q6UWS5 81 aa7.72□□□□□ -1.17
VPS33A-207ENST00000542790 PHF5AQ7RTV0 110 aaKnown RBP7.72□□□□□ -1.17
VPS33A-207ENST00000542790 M0QXV9 152 aa7.71□□□□□ -1.18
VPS33A-207ENST00000542790 KRTAP7-1Q8IUC3 87 aa7.71□□□□□ -1.18
VPS33A-207ENST00000542790 LEPROTO15243 131 aa7.7□□□□□ -1.18
VPS33A-207ENST00000542790 HERV-K104P63124 156 aa7.7□□□□□ -1.18
VPS33A-207ENST00000542790 PLEKHB2Q96CS7 222 aa7.7□□□□□ -1.18
VPS33A-207ENST00000542790 SRRM2Q9UQ35 2752 aaKnown RBP7.7□□□□□ -1.18
VPS33A-207ENST00000542790 MYMXA0A1B0GTQ4 84 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 LINC00587B1AMM8 73 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 C3orf79P0CE67 100 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 KRTDAPP60985 99 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 LBHQ53QV2 105 aaPredicted RBP7.69□□□□□ -1.18
VPS33A-207ENST00000542790 SERTAD4-AS1Q5TG53 156 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 LINC01545Q5VT33 79 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 NDUFA12Q9UI09 145 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 C22orf24Q9Y442 160 aa7.69□□□□□ -1.18
VPS33A-207ENST00000542790 J3QQQ9 107 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 HNRNPA3P51991 378 aaKnown RBP7.68□□□□□ -1.18
VPS33A-207ENST00000542790 LINC00158P58513 81 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 UBE2BP63146 152 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 LCE5AQ5TCM9 118 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 KRTAP4-2Q9BYR5 136 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 SND1-IT1Q9HBX3 110 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 PSORS1C2Q9UIG4 136 aa7.68□□□□□ -1.18
VPS33A-207ENST00000542790 S100A6P06703 90 aa7.67□□□□□ -1.18
VPS33A-207ENST00000542790 LGALS3P17931 250 aaKnown RBP7.67□□□□□ -1.18
VPS33A-207ENST00000542790 NMUP48645 174 aa7.67□□□□□ -1.18
VPS33A-207ENST00000542790 MEIG1Q5JSS6 88 aa7.67□□□□□ -1.18
VPS33A-207ENST00000542790 TP73-AS1Q9UF72 201 aa7.67□□□□□ -1.18
VPS33A-207ENST00000542790 C20orf202A1L168 122 aa7.66□□□□□ -1.18
VPS33A-207ENST00000542790 C1orf137Q5JT78 98 aa7.66□□□□□ -1.18
VPS33A-207ENST00000542790 MRPL55Q7Z7F7 128 aaKnown RBP7.66□□□□□ -1.18
VPS33A-207ENST00000542790 VPS13BQ7Z7G8 4022 aa7.66□□□□□ -1.18
VPS33A-207ENST00000542790 A0A0U1RRA0 63 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 E9PLD3 99 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 SMIM13P0DJ93 91 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 S100A2P29034 98 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 AKR1D1P51857 326 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 TSPEAR-AS2P59090 65 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 RPL24P83731 157 aaKnown RBP7.65□□□□□ -1.18
VPS33A-207ENST00000542790 NKAPP1Q8N9T2 125 aa7.65□□□□□ -1.18
VPS33A-207ENST00000542790 IGLV5-37A0A075B6J1 123 aa7.64□□□□□ -1.19
VPS33A-207ENST00000542790 KRTAP29-1A8MX34 341 aaPredicted RBP7.64□□□□□ -1.19
VPS33A-207ENST00000542790 OXTP01178 125 aa7.64□□□□□ -1.19
VPS33A-207ENST00000542790 SPINK6Q6UWN8 80 aa7.64□□□□□ -1.19
VPS33A-207ENST00000542790 KRTAP11-1Q8IUC1 163 aa7.64□□□□□ -1.19
VPS33A-207ENST00000542790 HIST3H2BBQ8N257 126 aa7.64□□□□□ -1.19
VPS33A-207ENST00000542790 KRTAP4-11Q9BYQ6 195 aa7.64□□□□□ -1.19
VPS33A-207ENST00000542790 SRSF9Q13242 221 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS33A-207ENST00000542790 HIST1H2BLQ99880 126 aa7.63□□□□□ -1.19
VPS33A-207ENST00000542790 IGLV7-43P04211 117 aa7.62□□□□□ -1.19
VPS33A-207ENST00000542790 MIR7-3HGQ8N6C7 128 aa7.62□□□□□ -1.19
VPS33A-207ENST00000542790 LINC00167Q96N53 147 aa7.62□□□□□ -1.19
VPS33A-207ENST00000542790 GAGE10A6NGK3 116 aa7.61□□□□□ -1.19
VPS33A-207ENST00000542790 VPREB1P12018 145 aa7.61□□□□□ -1.19
VPS33A-207ENST00000542790 RPL37AP8A6NKH3 93 aa7.6□□□□□ -1.19
VPS33A-207ENST00000542790 SNRPEP62304 92 aaKnown RBP7.6□□□□□ -1.19
VPS33A-207ENST00000542790 REG3GQ6UW15 175 aa7.59□□□□□ -1.19
VPS33A-207ENST00000542790 BOD1L2Q8IYS8 172 aa7.59□□□□□ -1.19
VPS33A-207ENST00000542790 FLG2Q5D862 2391 aaPredicted RBP7.59□□□□□ -1.2
VPS33A-207ENST00000542790 A0A0J9YXY3 114 aa7.58□□□□□ -1.2
VPS33A-207ENST00000542790 IGKV2D-26A0A0A0MRZ7 120 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 LOC107984156A0A0G2JMH3 177 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 C5orf52A6NGY3 159 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 ARL17AQ8IVW1 177 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 ATOH7Q8N100 152 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 DAND5Q8N907 189 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 Q8NDZ9 215 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 DIRC1Q969H9 104 aa7.57□□□□□ -1.2
VPS33A-207ENST00000542790 IGLV1-50A0A075B6I6 118 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 IGKV2-28A0A075B6P5 120 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 C9orf118A6NHY6 69 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 ZNF815PA8K554 130 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 M0R378 163 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 BCE1O60756 84 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 IGKV2D-28P01615 120 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 MIEN1Q9BRT3 115 aa7.56□□□□□ -1.2
VPS33A-207ENST00000542790 MYCBP2O75592 4640 aa7.55□□□□□ -1.2
VPS33A-207ENST00000542790 ZNF861PO60384 105 aa7.55□□□□□ -1.2
VPS33A-207ENST00000542790 TIMM17BO60830 172 aa7.54□□□□□ -1.2
VPS33A-207ENST00000542790 RPL28P46779 137 aaKnown RBP7.54□□□□□ -1.2
VPS33A-207ENST00000542790 ADAMTSL4-AS1Q5T5F5 129 aa7.54□□□□□ -1.2
VPS33A-207ENST00000542790 LINC01600Q96MT4 127 aa7.54□□□□□ -1.2
VPS33A-207ENST00000542790 H0Y9J4 135 aa7.53□□□□□ -1.2
VPS33A-207ENST00000542790 KRTAP3-1Q9BYR8 98 aa7.53□□□□□ -1.2
VPS33A-207ENST00000542790 TTTY13Q9BZ97 58 aa7.53□□□□□ -1.2
VPS33A-207ENST00000542790 HSBP1L1C9JCN9 74 aa7.52□□□□□ -1.21
VPS33A-207ENST00000542790 NDUFC2O95298 119 aa7.52□□□□□ -1.21
VPS33A-207ENST00000542790 SCGB1D4Q6XE38 83 aa7.52□□□□□ -1.21
VPS33A-207ENST00000542790 LITAFQ99732 161 aa7.52□□□□□ -1.21
VPS33A-207ENST00000542790 TMEM126AQ9H061 195 aa7.52□□□□□ -1.21
VPS33A-207ENST00000542790 TRBV10-2A0A0K0K1G8 114 aa7.51□□□□□ -1.21
VPS33A-207ENST00000542790 TMEM238C9JI98 176 aa7.51□□□□□ -1.21
VPS33A-207ENST00000542790 NCR3O14931 201 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms