RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 H7C423 109 aa4.45□□□□□ -1.7
YBX3-209ENST00000540747 LEPROTO15243 131 aa4.45□□□□□ -1.7
YBX3-209ENST00000540747 RPL24P83731 157 aaKnown RBP4.45□□□□□ -1.7
YBX3-209ENST00000540747 PLEKHB2Q96CS7 222 aa4.45□□□□□ -1.7
YBX3-209ENST00000540747 LINC00526Q96FQ7 95 aa4.45□□□□□ -1.7
YBX3-209ENST00000540747 CARD19Q96LW7 228 aa4.45□□□□□ -1.7
YBX3-209ENST00000540747 PKIGQ9Y2B9 76 aa4.45□□□□□ -1.7
YBX3-209ENST00000540747 IGLV4-69A0A075B6H9 119 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.44□□□□□ -1.7
YBX3-209ENST00000540747 IGHV1-58A0A0C4DH39 117 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 LINC00959A0A1B0GUT2 108 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 A0A1B0GWB2 263 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 A0A1W2PNN7 141 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 IGKV2-29A2NJV5 120 aaPredicted RBP4.44□□□□□ -1.7
YBX3-209ENST00000540747 F8W1H4 67 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 J3QQQ9 107 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 PCP4P48539 62 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 LYRM7Q5U5X0 104 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 PSORS1C2Q9UIG4 136 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 PYGO1Q9Y3Y4 419 aa4.44□□□□□ -1.7
YBX3-209ENST00000540747 TMEM223A0PJW6 202 aa4.43□□□□□ -1.7
YBX3-209ENST00000540747 J3QR89 54 aa4.43□□□□□ -1.7
YBX3-209ENST00000540747 XCL1P47992 114 aa4.43□□□□□ -1.7
YBX3-209ENST00000540747 SYCNQ0VAF6 134 aa4.43□□□□□ -1.7
YBX3-209ENST00000540747 LCE2AQ5TA79 106 aaPredicted RBP4.43□□□□□ -1.7
YBX3-209ENST00000540747 OPRPNQ99935 248 aaPredicted RBP4.43□□□□□ -1.7
YBX3-209ENST00000540747 SPANXB1Q9NS25 103 aaPredicted RBP4.43□□□□□ -1.7
YBX3-209ENST00000540747 IGLV4-3A0A075B6K6 122 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 LOC107984640A0A0U1RRK4 108 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 APOMO95445 188 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 KRTAP1-4P0C5Y4 121 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 SCGB1C2P0DMR2 95 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 SMAGPQ0VAQ4 97 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 CD164L2Q6UWJ8 174 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 PRR26Q8N8Z3 221 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 SPANXA1Q9NS26 97 aa4.42□□□□□ -1.7
YBX3-209ENST00000540747 MUC17Q685J3 4493 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 LOC107984156A0A0G2JMH3 177 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 ZNF22P17026 224 aaPredicted RBP4.41□□□□□ -1.7
YBX3-209ENST00000540747 PSMB2P49721 201 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 UBE2D1P51668 147 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 C9orf116Q5BN46 136 aaPredicted RBP4.41□□□□□ -1.7
YBX3-209ENST00000540747 KRTAP11-1Q8IUC1 163 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 ARL17AQ8IVW1 177 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 AMELXQ99217 191 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 TIMM21Q9BVV7 248 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 GEMIN7Q9H840 131 aaKnown RBP4.41□□□□□ -1.7
YBX3-209ENST00000540747 CDC42SE2Q9NRR3 84 aa4.41□□□□□ -1.7
YBX3-209ENST00000540747 TINCRA0A1B0GVN0 87 aa4.4□□□□□ -1.71
YBX3-209ENST00000540747 TMEM238C9JI98 176 aa4.4□□□□□ -1.71
YBX3-209ENST00000540747 H3BMG7 143 aa4.4□□□□□ -1.71
YBX3-209ENST00000540747 IGLV7-43P04211 117 aa4.4□□□□□ -1.71
YBX3-209ENST00000540747 GAGE2BQ13066 116 aa4.4□□□□□ -1.71
YBX3-209ENST00000540747 PRO1854Q9UHT4 67 aa4.4□□□□□ -1.71
YBX3-209ENST00000540747 IGLV1-50A0A075B6I6 118 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 TRBV20-1A0A075B6N2 111 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 H0Y9J4 135 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 ZNF561-AS1K7EIQ3 104 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 TSPAN13O95857 204 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 CFC1BP0CG36 223 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 CFC1P0CG37 223 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 TSPEAR-AS2P59090 65 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 MRPS36P82909 103 aaKnown RBP4.39□□□□□ -1.71
YBX3-209ENST00000540747 C1orf137Q5JT78 98 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 PHF5AQ7RTV0 110 aaKnown RBP4.39□□□□□ -1.71
YBX3-209ENST00000540747 MUSTN1Q8IVN3 82 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 DIRC1Q969H9 104 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 C2orf48Q96LS8 159 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 ERG28Q9UKR5 140 aa4.39□□□□□ -1.71
YBX3-209ENST00000540747 A0A0J9YXY3 114 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 KRTAP9-6A0A140TA67 174 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 A4D1N5 150 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 PRSS2P07478 247 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 SS18Q15532 418 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 C21orf62-AS1Q17RA5 79 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 KRTAP7-1Q8IUC3 87 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 TMEM101Q96IK0 257 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 UBE2D4Q9Y2X8 147 aa4.38□□□□□ -1.71
YBX3-209ENST00000540747 COX7A2LO14548 114 aa4.37□□□□□ -1.71
YBX3-209ENST00000540747 Q1RN00 199 aa4.37□□□□□ -1.71
YBX3-209ENST00000540747 ETDBQ3ZM63 59 aa4.37□□□□□ -1.71
YBX3-209ENST00000540747 RNASE13Q5GAN3 156 aaKnown RBP4.37□□□□□ -1.71
YBX3-209ENST00000540747 SFTA2Q6UW10 78 aa4.37□□□□□ -1.71
YBX3-209ENST00000540747 CAMK2N2Q96S95 79 aa4.37□□□□□ -1.71
YBX3-209ENST00000540747 NDUFA12Q9UI09 145 aa4.37□□□□□ -1.71
YBX3-209ENST00000540747 CSDC2Q9Y534 153 aaKnown RBP4.37□□□□□ -1.71
YBX3-209ENST00000540747 A0A0B4J2C4 111 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 A0A0U1RQV1 116 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 FAM168BA1KXE4 195 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 H7C2G1 150 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 SPINK8P0C7L1 97 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 TLX1NBP0CAT3 122 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 IFITM1P13164 125 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 HERVK_113P63121 156 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 Q6ZUT4 128 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 FAM104AQ969W3 186 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 SIGMAR1Q99720 223 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 PRO0461Q9UI25 63 aa4.36□□□□□ -1.71
YBX3-209ENST00000540747 TIMM17BO60830 172 aa4.35□□□□□ -1.71
YBX3-209ENST00000540747 TCL1BO95988 128 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms