RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LELP1Q5T871 98 aa11.4□□□□□ -0.58
USP28-208ENST00000540438 IGKV3D-7A0A0C4DH55 119 aa11.39□□□□□ -0.59
USP28-208ENST00000540438 CCDC179H3BU77 68 aa11.39□□□□□ -0.59
USP28-208ENST00000540438 B5MCH6 92 aa11.39□□□□□ -0.59
USP28-208ENST00000540438 NDUFV3P56181 108 aaKnown RBP11.38□□□□□ -0.59
USP28-208ENST00000540438 ESRGQ1W209 222 aa11.38□□□□□ -0.59
USP28-208ENST00000540438 DEFB121Q5J5C9 76 aa11.38□□□□□ -0.59
USP28-208ENST00000540438 SDIM1Q6ZPB5 146 aa11.37□□□□□ -0.59
USP28-208ENST00000540438 IGKV2D-24A0A075B6R9 120 aa11.35□□□□□ -0.59
USP28-208ENST00000540438 C6orf48Q9UBA6 75 aa11.35□□□□□ -0.59
USP28-208ENST00000540438 CXCL5P42830 114 aa11.35□□□□□ -0.59
USP28-208ENST00000540438 FAM236AA0A1B0GUQ0 79 aa11.34□□□□□ -0.59
USP28-208ENST00000540438 FAM236BA0A1B0GV22 79 aa11.34□□□□□ -0.59
USP28-208ENST00000540438 SS18L2Q9UHA2 77 aa11.34□□□□□ -0.59
USP28-208ENST00000540438 DEFB131BA0A096LNP1 70 aa11.33□□□□□ -0.6
USP28-208ENST00000540438 ZNF561-AS1K7EIQ3 104 aa11.33□□□□□ -0.6
USP28-208ENST00000540438 CAMK2N2Q96S95 79 aa11.33□□□□□ -0.6
USP28-208ENST00000540438 A0A087WVE0 104 aa11.32□□□□□ -0.6
USP28-208ENST00000540438 LINC00846Q9NV44 126 aa11.32□□□□□ -0.6
USP28-208ENST00000540438 H0YGX0 51 aa11.32□□□□□ -0.6
USP28-208ENST00000540438 SRRM2Q9UQ35 2752 aaKnown RBP11.31□□□□□ -0.6
USP28-208ENST00000540438 TRBV10-3A0A0K0K1G6 114 aa11.31□□□□□ -0.6
USP28-208ENST00000540438 ORMDL1Q9P0S3 153 aa11.31□□□□□ -0.6
USP28-208ENST00000540438 Q6ZRU5 148 aa11.3□□□□□ -0.6
USP28-208ENST00000540438 TMEM126AQ9H061 195 aa11.3□□□□□ -0.6
USP28-208ENST00000540438 Q8N814 137 aa11.3□□□□□ -0.6
USP28-208ENST00000540438 C11orf45Q8TAV5 145 aa11.3□□□□□ -0.6
USP28-208ENST00000540438 LINC01600Q96MT4 127 aa11.3□□□□□ -0.6
USP28-208ENST00000540438 PRR34Q9NV39 138 aa11.29□□□□□ -0.6
USP28-208ENST00000540438 CASC10Q5T4H9 136 aa11.28□□□□□ -0.6
USP28-208ENST00000540438 M0R2N4 97 aa11.27□□□□□ -0.6
USP28-208ENST00000540438 KLK5Q9Y337 293 aaPredicted RBP11.27□□□□□ -0.61
USP28-208ENST00000540438 INAFM2P0DMQ5 153 aa11.25□□□□□ -0.61
USP28-208ENST00000540438 Q6ZQY7 126 aa11.25□□□□□ -0.61
USP28-208ENST00000540438 LAMTOR3Q9UHA4 124 aa11.25□□□□□ -0.61
USP28-208ENST00000540438 DNAH10Q8IVF4 4471 aa11.25□□□□□ -0.61
USP28-208ENST00000540438 FAM240AA0A1B0GVK7 77 aa11.24□□□□□ -0.61
USP28-208ENST00000540438 C1orf43Q9BWL3 253 aa11.23□□□□□ -0.61
USP28-208ENST00000540438 C15orf56Q8N910 161 aa11.23□□□□□ -0.61
USP28-208ENST00000540438 HIST1H4AP62805 103 aaKnown RBP11.22□□□□□ -0.61
USP28-208ENST00000540438 COX17Q14061 63 aa11.22□□□□□ -0.61
USP28-208ENST00000540438 Q6ZRP5 223 aa11.2□□□□□ -0.62
USP28-208ENST00000540438 LINC00643Q86TS7 51 aa11.2□□□□□ -0.62
USP28-208ENST00000540438 hADV29S1A0JD25 119 aa11.2□□□□□ -0.62
USP28-208ENST00000540438 LINC01561Q8N1V8 128 aa11.19□□□□□ -0.62
USP28-208ENST00000540438 LINC00575Q6W349 94 aa11.19□□□□□ -0.62
USP28-208ENST00000540438 RPL37AP8A6NKH3 93 aa11.19□□□□□ -0.62
USP28-208ENST00000540438 DEFB105AQ8NG35 78 aa11.19□□□□□ -0.62
USP28-208ENST00000540438 NDUFC2O95298 119 aa11.18□□□□□ -0.62
USP28-208ENST00000540438 FAM168BA1KXE4 195 aa11.18□□□□□ -0.62
USP28-208ENST00000540438 WIPF1O43516 503 aa11.18□□□□□ -0.62
USP28-208ENST00000540438 KRTAP26-1Q6PEX3 210 aa11.18□□□□□ -0.62
USP28-208ENST00000540438 TRAV23DV6A0A075B6W5 121 aa11.17□□□□□ -0.62
USP28-208ENST00000540438 ACYP1P07311 99 aa11.17□□□□□ -0.62
USP28-208ENST00000540438 HUWE1Q7Z6Z7 4374 aaKnown RBP11.16□□□□□ -0.62
USP28-208ENST00000540438 SCXQ7RTU7 201 aa11.16□□□□□ -0.62
USP28-208ENST00000540438 TRBV7-7A0A0K0K1E9 115 aa11.15□□□□□ -0.62
USP28-208ENST00000540438 ZNF73O43830 326 aaPredicted RBP11.14□□□□□ -0.63
USP28-208ENST00000540438 FAM19A1Q7Z5A9 133 aa11.14□□□□□ -0.63
USP28-208ENST00000540438 IGLV6-57P01721 117 aa11.14□□□□□ -0.63
USP28-208ENST00000540438 PPDPFQ9H3Y8 114 aa11.14□□□□□ -0.63
USP28-208ENST00000540438 LINC00588Q9Y4M8 146 aa11.14□□□□□ -0.63
USP28-208ENST00000540438 TMEM256-PLSCR3K7ERE1 68 aa11.14□□□□□ -0.63
USP28-208ENST00000540438 SERTAD4-AS1Q5TG53 156 aa11.14□□□□□ -0.63
USP28-208ENST00000540438 EGFEM1PQ0D2K5 195 aa11.13□□□□□ -0.63
USP28-208ENST00000540438 Q6Q795 121 aa11.13□□□□□ -0.63
USP28-208ENST00000540438 DIRC1Q969H9 104 aa11.12□□□□□ -0.63
USP28-208ENST00000540438 VPREB1P12018 145 aa11.12□□□□□ -0.63
USP28-208ENST00000540438 C3orf22Q8N5N4 141 aa11.12□□□□□ -0.63
USP28-208ENST00000540438 K7EIL1 84 aa11.11□□□□□ -0.63
USP28-208ENST00000540438 CCKP06307 115 aa11.11□□□□□ -0.63
USP28-208ENST00000540438 OBSCN-AS1Q96MR7 158 aa11.11□□□□□ -0.63
USP28-208ENST00000540438 SYCNQ0VAF6 134 aa11.11□□□□□ -0.63
USP28-208ENST00000540438 HAMPP81172 84 aa11.1□□□□□ -0.63
USP28-208ENST00000540438 DNAH7Q8WXX0 4024 aa11.1□□□□□ -0.63
USP28-208ENST00000540438 RBM3P98179 157 aaKnown RBP11.1□□□□□ -0.63
USP28-208ENST00000540438 NDUFC2-KCTD14E9PQ53 114 aa11.09□□□□□ -0.63
USP28-208ENST00000540438 COX7BP24311 80 aa11.09□□□□□ -0.63
USP28-208ENST00000540438 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.08□□□□□ -0.64
USP28-208ENST00000540438 DNAH3Q8TD57 4116 aa11.08□□□□□ -0.64
USP28-208ENST00000540438 USP17L23D6RBM5 183 aa11.07□□□□□ -0.64
USP28-208ENST00000540438 CYSTM1Q9H1C7 97 aa11.07□□□□□ -0.64
USP28-208ENST00000540438 A0A1B0GX51 115 aa11.06□□□□□ -0.64
USP28-208ENST00000540438 LINC01556Q5JQF7 62 aa11.06□□□□□ -0.64
USP28-208ENST00000540438 FAM19A5Q7Z5A7 132 aaPredicted RBP11.06□□□□□ -0.64
USP28-208ENST00000540438 TGP01266 2768 aa11.05□□□□□ -0.64
USP28-208ENST00000540438 LINC00167Q96N53 147 aa11.05□□□□□ -0.64
USP28-208ENST00000540438 IGKV2-24A0A0C4DH68 120 aa11.05□□□□□ -0.64
USP28-208ENST00000540438 JMJD7-PLA2G4BH0Y9G9 81 aa11.04□□□□□ -0.64
USP28-208ENST00000540438 NKAPP1Q8N9T2 125 aa11.04□□□□□ -0.64
USP28-208ENST00000540438 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.04□□□□□ -0.64
USP28-208ENST00000540438 C9orf153Q5TBE3 101 aa11.04□□□□□ -0.64
USP28-208ENST00000540438 GVQW2A0A096LPI5 108 aaPredicted RBP11.03□□□□□ -0.64
USP28-208ENST00000540438 DSCR8Q96T75 97 aa11.03□□□□□ -0.64
USP28-208ENST00000540438 DNAH9Q9NYC9 4486 aa11.03□□□□□ -0.64
USP28-208ENST00000540438 A0A0G2JQZ4 141 aa11.03□□□□□ -0.64
USP28-208ENST00000540438 A0A1W2PNN7 141 aa11.03□□□□□ -0.64
USP28-208ENST00000540438 C7orf33Q8WU49 177 aa11.02□□□□□ -0.65
USP28-208ENST00000540438 Q6ZQT0 140 aa11.02□□□□□ -0.65
USP28-208ENST00000540438 Q8N9L7 120 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms