RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TRAV23DV6A0A075B6W5 121 aa7.34□□□□□ -1.23
CLIP1-213ENST00000540338 WIPF1O43516 503 aa7.33□□□□□ -1.24
CLIP1-213ENST00000540338 C10orf25Q5T742 122 aa7.33□□□□□ -1.24
CLIP1-213ENST00000540338 Q8N814 137 aa7.33□□□□□ -1.24
CLIP1-213ENST00000540338 KIAA0087Q14695 138 aa7.33□□□□□ -1.24
CLIP1-213ENST00000540338 NBEAL2Q6ZNJ1 2754 aa7.32□□□□□ -1.24
CLIP1-213ENST00000540338 M0R378 163 aa7.32□□□□□ -1.24
CLIP1-213ENST00000540338 NDUFV3P56181 108 aaKnown RBP7.32□□□□□ -1.24
CLIP1-213ENST00000540338 IGKV3D-7A0A0C4DH55 119 aa7.32□□□□□ -1.24
CLIP1-213ENST00000540338 PRR34Q9NV39 138 aa7.32□□□□□ -1.24
CLIP1-213ENST00000540338 FAM236AA0A1B0GUQ0 79 aa7.31□□□□□ -1.24
CLIP1-213ENST00000540338 FAM236BA0A1B0GV22 79 aa7.31□□□□□ -1.24
CLIP1-213ENST00000540338 C2orf48Q96LS8 159 aa7.31□□□□□ -1.24
CLIP1-213ENST00000540338 TRBV10-3A0A0K0K1G6 114 aa7.31□□□□□ -1.24
CLIP1-213ENST00000540338 LINC01556Q5JQF7 62 aa7.31□□□□□ -1.24
CLIP1-213ENST00000540338 HAMPP81172 84 aa7.3□□□□□ -1.24
CLIP1-213ENST00000540338 Q6Q795 121 aa7.3□□□□□ -1.24
CLIP1-213ENST00000540338 Q6ZQY7 126 aa7.3□□□□□ -1.24
CLIP1-213ENST00000540338 ZNF73O43830 326 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-213ENST00000540338 ETDCA0A1B0GVM5 59 aa7.3□□□□□ -1.24
CLIP1-213ENST00000540338 C6orf48Q9UBA6 75 aa7.3□□□□□ -1.24
CLIP1-213ENST00000540338 TEP1Q99973 2627 aaKnown RBP7.29□□□□□ -1.24
CLIP1-213ENST00000540338 IMUPQ9GZP8 106 aa7.29□□□□□ -1.24
CLIP1-213ENST00000540338 NDUFC2-KCTD14E9PQ53 114 aa7.29□□□□□ -1.24
CLIP1-213ENST00000540338 PDE6GP18545 87 aa7.29□□□□□ -1.24
CLIP1-213ENST00000540338 Q6ZRU5 148 aa7.29□□□□□ -1.24
CLIP1-213ENST00000540338 DEFB105AQ8NG35 78 aa7.28□□□□□ -1.24
CLIP1-213ENST00000540338 F8WDY8 70 aa7.28□□□□□ -1.24
CLIP1-213ENST00000540338 MAST4O15021 2626 aa7.28□□□□□ -1.24
CLIP1-213ENST00000540338 LINC00575Q6W349 94 aa7.28□□□□□ -1.24
CLIP1-213ENST00000540338 LINC01600Q96MT4 127 aa7.28□□□□□ -1.24
CLIP1-213ENST00000540338 GVQW2A0A096LPI5 108 aaPredicted RBP7.27□□□□□ -1.25
CLIP1-213ENST00000540338 B5MCH6 92 aa7.26□□□□□ -1.25
CLIP1-213ENST00000540338 NSD1Q96L73 2696 aaPredicted RBP7.26□□□□□ -1.25
CLIP1-213ENST00000540338 TENM4Q6N022 2769 aa7.26□□□□□ -1.25
CLIP1-213ENST00000540338 SDIM1Q6ZPB5 146 aa7.26□□□□□ -1.25
CLIP1-213ENST00000540338 HIVEP1P15822 2718 aa7.26□□□□□ -1.25
CLIP1-213ENST00000540338 C9orf153Q5TBE3 101 aa7.26□□□□□ -1.25
CLIP1-213ENST00000540338 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.26□□□□□ -1.25
CLIP1-213ENST00000540338 CCKP06307 115 aa7.25□□□□□ -1.25
CLIP1-213ENST00000540338 F8WEM9 126 aa7.25□□□□□ -1.25
CLIP1-213ENST00000540338 UBE2BP63146 152 aa7.25□□□□□ -1.25
CLIP1-213ENST00000540338 USP17L23D6RBM5 183 aa7.24□□□□□ -1.25
CLIP1-213ENST00000540338 ATOX1O00244 68 aa7.24□□□□□ -1.25
CLIP1-213ENST00000540338 PDZD2O15018 2839 aa7.23□□□□□ -1.25
CLIP1-213ENST00000540338 ATP5EP2Q5VTU8 51 aa7.21□□□□□ -1.25
CLIP1-213ENST00000540338 CSMD2Q7Z408 3487 aa7.21□□□□□ -1.25
CLIP1-213ENST00000540338 C14orf177Q52M58 125 aa7.21□□□□□ -1.25
CLIP1-213ENST00000540338 Q6JHZ5 121 aa7.21□□□□□ -1.25
CLIP1-213ENST00000540338 IGKV2-24A0A0C4DH68 120 aa7.21□□□□□ -1.26
CLIP1-213ENST00000540338 TRBV7-7A0A0K0K1E9 115 aa7.21□□□□□ -1.26
CLIP1-213ENST00000540338 DNAH10OSP0CZ25 163 aa7.21□□□□□ -1.26
CLIP1-213ENST00000540338 FAM19A5Q7Z5A7 132 aaPredicted RBP7.21□□□□□ -1.26
CLIP1-213ENST00000540338 LOC107984640A0A0U1RRK4 108 aa7.21□□□□□ -1.26
CLIP1-213ENST00000540338 LINC00846Q9NV44 126 aa7.21□□□□□ -1.26
CLIP1-213ENST00000540338 IGLV6-57P01721 117 aa7.2□□□□□ -1.26
CLIP1-213ENST00000540338 LINC00588Q9Y4M8 146 aa7.2□□□□□ -1.26
CLIP1-213ENST00000540338 KMT2BQ9UMN6 2715 aaPredicted RBP7.2□□□□□ -1.26
CLIP1-213ENST00000540338 PKIGQ9Y2B9 76 aa7.2□□□□□ -1.26
CLIP1-213ENST00000540338 RPL37AP8A6NKH3 93 aa7.19□□□□□ -1.26
CLIP1-213ENST00000540338 FUSP35637 526 aaKnown RBP eCLIP7.19□□□□□ -1.26
CLIP1-213ENST00000540338 K7EIL1 84 aa7.18□□□□□ -1.26
CLIP1-213ENST00000540338 DHRS4-AS1Q9P1J3 65 aa7.18□□□□□ -1.26
CLIP1-213ENST00000540338 C15orf56Q8N910 161 aa7.18□□□□□ -1.26
CLIP1-213ENST00000540338 NREPQ16612 68 aa7.18□□□□□ -1.26
CLIP1-213ENST00000540338 VPREB1P12018 145 aa7.17□□□□□ -1.26
CLIP1-213ENST00000540338 STAB1Q9NY15 2570 aa7.17□□□□□ -1.26
CLIP1-213ENST00000540338 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-213ENST00000540338 UPK3BQ9BT76 320 aa7.17□□□□□ -1.26
CLIP1-213ENST00000540338 SS18L2Q9UHA2 77 aa7.17□□□□□ -1.26
CLIP1-213ENST00000540338 TRBV7-6A0A0J9YX20 115 aa7.16□□□□□ -1.26
CLIP1-213ENST00000540338 COL6A5A8TX70 2615 aa7.16□□□□□ -1.26
CLIP1-213ENST00000540338 TM2D3Q9BRN9 247 aa7.16□□□□□ -1.26
CLIP1-213ENST00000540338 CCDC179H3BU77 68 aa7.16□□□□□ -1.26
CLIP1-213ENST00000540338 Q6ZRP5 223 aa7.16□□□□□ -1.26
CLIP1-213ENST00000540338 ELOF1P60002 83 aaKnown RBP7.15□□□□□ -1.26
CLIP1-213ENST00000540338 UQCRQO14949 82 aa7.15□□□□□ -1.26
CLIP1-213ENST00000540338 C7orf33Q8WU49 177 aa7.15□□□□□ -1.27
CLIP1-213ENST00000540338 NOTCH1P46531 2555 aa7.15□□□□□ -1.27
CLIP1-213ENST00000540338 SMCR5Q8TEV8 140 aa7.14□□□□□ -1.27
CLIP1-213ENST00000540338 VPS13CQ709C8 3753 aa7.13□□□□□ -1.27
CLIP1-213ENST00000540338 MGAM2Q2M2H8 2515 aa7.13□□□□□ -1.27
CLIP1-213ENST00000540338 C9orf129Q5T035 196 aaKnown RBP7.13□□□□□ -1.27
CLIP1-213ENST00000540338 FAM19A1Q7Z5A9 133 aa7.13□□□□□ -1.27
CLIP1-213ENST00000540338 C3orf22Q8N5N4 141 aa7.13□□□□□ -1.27
CLIP1-213ENST00000540338 LINC00167Q96N53 147 aa7.13□□□□□ -1.27
CLIP1-213ENST00000540338 PRYO14603 147 aa7.12□□□□□ -1.27
CLIP1-213ENST00000540338 HIGD2AQ9BW72 106 aa7.12□□□□□ -1.27
CLIP1-213ENST00000540338 MRPL55Q7Z7F7 128 aaKnown RBP7.12□□□□□ -1.27
CLIP1-213ENST00000540338 A0A087WVE0 104 aa7.12□□□□□ -1.27
CLIP1-213ENST00000540338 C22orf24Q9Y442 160 aa7.11□□□□□ -1.27
CLIP1-213ENST00000540338 NUPR2A6NF83 97 aa7.11□□□□□ -1.27
CLIP1-213ENST00000540338 NIPBLQ6KC79 2804 aaeCLIP7.11□□□□□ -1.271e-6■□□□□ 9
CLIP1-213ENST00000540338 UBE2AP49459 152 aa7.1□□□□□ -1.27
CLIP1-213ENST00000540338 SCXQ7RTU7 201 aa7.1□□□□□ -1.27
CLIP1-213ENST00000540338 Q6ZQT0 140 aa7.1□□□□□ -1.27
CLIP1-213ENST00000540338 Q8NDZ9 215 aa7.1□□□□□ -1.27
CLIP1-213ENST00000540338 BPY2O14599 106 aa7.1□□□□□ -1.27
CLIP1-213ENST00000540338 COX7CP15954 63 aa7.1□□□□□ -1.27
CLIP1-213ENST00000540338 LOC110117498A0A087WWA1 95 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms