RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SPANXCQ9NY87 97 aa12.07□□□□□ -0.48
TNFRSF1A-213ENST00000540022 TSTD3H0UI37 97 aa12.06□□□□□ -0.48
TNFRSF1A-213ENST00000540022 PANO1I0J062 215 aa12.06□□□□□ -0.48
TNFRSF1A-213ENST00000540022 EIF4EBP3O60516 100 aaPredicted RBP12.06□□□□□ -0.48
TNFRSF1A-213ENST00000540022 NPC2P61916 151 aa12.06□□□□□ -0.48
TNFRSF1A-213ENST00000540022 SOSTDC1Q6X4U4 206 aa12.06□□□□□ -0.48
TNFRSF1A-213ENST00000540022 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.06□□□□□ -0.48
TNFRSF1A-213ENST00000540022 SRSF9Q13242 221 aaKnown RBP eCLIP12.05□□□□□ -0.48
TNFRSF1A-213ENST00000540022 HNRNPA3P51991 378 aaKnown RBP12.04□□□□□ -0.48
TNFRSF1A-213ENST00000540022 LINC00308Q8TCZ7 52 aa12.04□□□□□ -0.48
TNFRSF1A-213ENST00000540022 Q6ZVH6 145 aa12.03□□□□□ -0.48
TNFRSF1A-213ENST00000540022 MUSTN1Q8IVN3 82 aa12.02□□□□□ -0.48
TNFRSF1A-213ENST00000540022 HIST1H4GQ99525 98 aa12.02□□□□□ -0.48
TNFRSF1A-213ENST00000540022 KRTAP17-1Q9BYP8 105 aa12.02□□□□□ -0.48
TNFRSF1A-213ENST00000540022 FAM30AQ9NZY2 134 aa12.02□□□□□ -0.48
TNFRSF1A-213ENST00000540022 LOC107984156A0A0G2JMH3 177 aa12.01□□□□□ -0.49
TNFRSF1A-213ENST00000540022 ARL17AQ8IVW1 177 aa12.01□□□□□ -0.49
TNFRSF1A-213ENST00000540022 SPACA4Q8TDM5 124 aa12.01□□□□□ -0.49
TNFRSF1A-213ENST00000540022 LINC00474Q9P2X8 69 aa12.01□□□□□ -0.49
TNFRSF1A-213ENST00000540022 IFITM1P13164 125 aa12.01□□□□□ -0.49
TNFRSF1A-213ENST00000540022 Q8NDZ9 215 aa12.01□□□□□ -0.49
TNFRSF1A-213ENST00000540022 FAM168BA1KXE4 195 aa12□□□□□ -0.49
TNFRSF1A-213ENST00000540022 CDK2AP2O75956 126 aa12□□□□□ -0.49
TNFRSF1A-213ENST00000540022 ABCA13Q86UQ4 5058 aa11.99□□□□□ -0.49
TNFRSF1A-213ENST00000540022 A0A1W2PNN7 141 aa11.99□□□□□ -0.49
TNFRSF1A-213ENST00000540022 Q6ZSA8 131 aa11.99□□□□□ -0.49
TNFRSF1A-213ENST00000540022 KRTAP7-1Q8IUC3 87 aa11.99□□□□□ -0.49
TNFRSF1A-213ENST00000540022 TAL2Q16559 108 aa11.98□□□□□ -0.49
TNFRSF1A-213ENST00000540022 SERTAD4-AS1Q5TG53 156 aa11.98□□□□□ -0.49
TNFRSF1A-213ENST00000540022 DPH3Q96FX2 82 aa11.98□□□□□ -0.49
TNFRSF1A-213ENST00000540022 VPREB1P12018 145 aa11.96□□□□□ -0.49
TNFRSF1A-213ENST00000540022 HSD52Q0P140 79 aa11.96□□□□□ -0.49
TNFRSF1A-213ENST00000540022 PPDPFQ9H3Y8 114 aa11.96□□□□□ -0.49
TNFRSF1A-213ENST00000540022 PLA2G2DQ9UNK4 145 aa11.96□□□□□ -0.49
TNFRSF1A-213ENST00000540022 A0A087WYN8 130 aa11.96□□□□□ -0.5
TNFRSF1A-213ENST00000540022 DDTP30046 118 aa11.96□□□□□ -0.5
TNFRSF1A-213ENST00000540022 FAM19A5Q7Z5A7 132 aaPredicted RBP11.96□□□□□ -0.5
TNFRSF1A-213ENST00000540022 COPS9Q8WXC6 57 aa11.96□□□□□ -0.5
TNFRSF1A-213ENST00000540022 DNAH8Q96JB1 4490 aa11.95□□□□□ -0.5
TNFRSF1A-213ENST00000540022 CTAG1AP78358 180 aa11.95□□□□□ -0.5
TNFRSF1A-213ENST00000540022 PRR3P79522 188 aaKnown RBP11.95□□□□□ -0.5
TNFRSF1A-213ENST00000540022 CEND1Q8N111 149 aa11.95□□□□□ -0.5
TNFRSF1A-213ENST00000540022 KRTAP4-5Q9BYR2 181 aa11.95□□□□□ -0.5
TNFRSF1A-213ENST00000540022 HAMPP81172 84 aa11.94□□□□□ -0.5
TNFRSF1A-213ENST00000540022 NDUFC2O95298 119 aa11.93□□□□□ -0.5
TNFRSF1A-213ENST00000540022 RPL24P83731 157 aaKnown RBP11.93□□□□□ -0.5
TNFRSF1A-213ENST00000540022 A4D1N5 150 aa11.92□□□□□ -0.5
TNFRSF1A-213ENST00000540022 CIRBP-AS1Q8TBR5 109 aa11.92□□□□□ -0.5
TNFRSF1A-213ENST00000540022 PLAC8Q9NZF1 115 aa11.92□□□□□ -0.5
TNFRSF1A-213ENST00000540022 IGLV5-37A0A075B6J1 123 aa11.91□□□□□ -0.5
TNFRSF1A-213ENST00000540022 EPM2AB3EWF7 344 aa11.91□□□□□ -0.5
TNFRSF1A-213ENST00000540022 FXYD2P54710 66 aa11.91□□□□□ -0.5
TNFRSF1A-213ENST00000540022 SCXQ7RTU7 201 aa11.91□□□□□ -0.5
TNFRSF1A-213ENST00000540022 C22orf24Q9Y442 160 aa11.91□□□□□ -0.5
TNFRSF1A-213ENST00000540022 IGKV2-28A0A075B6P5 120 aa11.9□□□□□ -0.5
TNFRSF1A-213ENST00000540022 NCR3O14931 201 aa11.9□□□□□ -0.5
TNFRSF1A-213ENST00000540022 IGKV2D-28P01615 120 aa11.9□□□□□ -0.5
TNFRSF1A-213ENST00000540022 NKAPP1Q8N9T2 125 aa11.9□□□□□ -0.5
TNFRSF1A-213ENST00000540022 M0QXV9 152 aa11.89□□□□□ -0.51
TNFRSF1A-213ENST00000540022 XGP55808 180 aa11.89□□□□□ -0.51
TNFRSF1A-213ENST00000540022 PCP4L1A6NKN8 68 aa11.88□□□□□ -0.51
TNFRSF1A-213ENST00000540022 FAT1Q14517 4588 aa11.88□□□□□ -0.51
TNFRSF1A-213ENST00000540022 HINT1P49773 126 aaPredicted RBP11.87□□□□□ -0.51
TNFRSF1A-213ENST00000540022 PHF5AQ7RTV0 110 aaKnown RBP11.87□□□□□ -0.51
TNFRSF1A-213ENST00000540022 C7orf33Q8WU49 177 aa11.87□□□□□ -0.51
TNFRSF1A-213ENST00000540022 M0R378 163 aa11.86□□□□□ -0.51
TNFRSF1A-213ENST00000540022 BVES-AS1Q5T3Y7 98 aa11.86□□□□□ -0.51
TNFRSF1A-213ENST00000540022 MRPL55Q7Z7F7 128 aaKnown RBP11.86□□□□□ -0.51
TNFRSF1A-213ENST00000540022 TRBV10-2A0A0K0K1G8 114 aa11.86□□□□□ -0.51
TNFRSF1A-213ENST00000540022 GAGE10A6NGK3 116 aa11.86□□□□□ -0.51
TNFRSF1A-213ENST00000540022 LINC00337Q8N6G1 96 aa11.86□□□□□ -0.51
TNFRSF1A-213ENST00000540022 Q8N1X5 172 aa11.85□□□□□ -0.51
TNFRSF1A-213ENST00000540022 LINC00167Q96N53 147 aa11.85□□□□□ -0.51
TNFRSF1A-213ENST00000540022 TMEM238LA0A1B0GVL6 79 aa11.84□□□□□ -0.51
TNFRSF1A-213ENST00000540022 A6NJY4 79 aa11.84□□□□□ -0.51
TNFRSF1A-213ENST00000540022 CFC1BP0CG36 223 aa11.84□□□□□ -0.51
TNFRSF1A-213ENST00000540022 CFC1P0CG37 223 aa11.84□□□□□ -0.51
TNFRSF1A-213ENST00000540022 M0R143 59 aa11.83□□□□□ -0.52
TNFRSF1A-213ENST00000540022 TRBV10-3A0A0K0K1G6 114 aa11.81□□□□□ -0.52
TNFRSF1A-213ENST00000540022 LBHQ53QV2 105 aaPredicted RBP11.81□□□□□ -0.52
TNFRSF1A-213ENST00000540022 OR13C6PQ8NH95 151 aa11.81□□□□□ -0.52
TNFRSF1A-213ENST00000540022 NHP2Q9NX24 153 aaKnown RBP11.81□□□□□ -0.52
TNFRSF1A-213ENST00000540022 RPL37AP8A6NKH3 93 aa11.81□□□□□ -0.52
TNFRSF1A-213ENST00000540022 KRTAP11-1Q8IUC1 163 aa11.81□□□□□ -0.52
TNFRSF1A-213ENST00000540022 A0A0B4J2C4 111 aa11.8□□□□□ -0.52
TNFRSF1A-213ENST00000540022 A6NDN8 102 aa11.8□□□□□ -0.52
TNFRSF1A-213ENST00000540022 IGLV6-57P01721 117 aa11.8□□□□□ -0.52
TNFRSF1A-213ENST00000540022 S100A7L2Q5SY68 101 aa11.8□□□□□ -0.52
TNFRSF1A-213ENST00000540022 IGLV1-50A0A075B6I6 118 aa11.79□□□□□ -0.52
TNFRSF1A-213ENST00000540022 TRAV13-2A0A0B4J235 113 aa11.79□□□□□ -0.52
TNFRSF1A-213ENST00000540022 A0A1B0GWB2 263 aa11.78□□□□□ -0.52
TNFRSF1A-213ENST00000540022 K7ERJ3 54 aa11.78□□□□□ -0.52
TNFRSF1A-213ENST00000540022 UBE2BP63146 152 aa11.78□□□□□ -0.52
TNFRSF1A-213ENST00000540022 BATFQ16520 125 aa11.78□□□□□ -0.52
TNFRSF1A-213ENST00000540022 RAB37Q96AX2 223 aa11.78□□□□□ -0.52
TNFRSF1A-213ENST00000540022 TMEM126AQ9H061 195 aa11.77□□□□□ -0.52
TNFRSF1A-213ENST00000540022 SMR3BP02814 79 aaPredicted RBP11.76□□□□□ -0.53
TNFRSF1A-213ENST00000540022 RPL13AP40429 203 aaKnown RBP11.76□□□□□ -0.53
TNFRSF1A-213ENST00000540022 VPS13BQ7Z7G8 4022 aa11.75□□□□□ -0.53
TNFRSF1A-213ENST00000540022 SNHG12Q9BXW3 62 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms