RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TRAV13-1	A0A0B4J241	112 aa		7.62	□□□□□ -1.19
CAPN1-223	ENST00000533079	HINT1	P49773	126 aa	Predicted RBP	7.62	□□□□□ -1.19
CAPN1-223	ENST00000533079	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	7.62	□□□□□ -1.19
CAPN1-223	ENST00000533079	CARD19	Q96LW7	228 aa		7.62	□□□□□ -1.19
CAPN1-223	ENST00000533079	TP73-AS1	Q9UF72	201 aa		7.62	□□□□□ -1.19
CAPN1-223	ENST00000533079	IGHV3OR16-9	A0A0B4J2B5	98 aa		7.61	□□□□□ -1.19
CAPN1-223	ENST00000533079	LINC00959	A0A1B0GUT2	108 aa		7.61	□□□□□ -1.19
CAPN1-223	ENST00000533079	ORAOV1	Q8WV07	137 aa		7.61	□□□□□ -1.19
CAPN1-223	ENST00000533079	SPANXB1	Q9NS25	103 aa	Predicted RBP	7.61	□□□□□ -1.19
CAPN1-223	ENST00000533079	FAT4	Q6V0I7	4981 aa		7.6	□□□□□ -1.19
CAPN1-223	ENST00000533079	TSPEAR-AS2	P59090	65 aa		7.6	□□□□□ -1.19
CAPN1-223	ENST00000533079	FOXI1	Q12951	378 aa		7.6	□□□□□ -1.19
CAPN1-223	ENST00000533079	SS18	Q15532	418 aa		7.6	□□□□□ -1.19
CAPN1-223	ENST00000533079		A0A087WZ39	114 aa		7.59	□□□□□ -1.19
CAPN1-223	ENST00000533079	IGKV3OR2-268	A0A0C4DH90	116 aa		7.59	□□□□□ -1.19
CAPN1-223	ENST00000533079	SPINK8	P0C7L1	97 aa		7.59	□□□□□ -1.19
CAPN1-223	ENST00000533079	PTTG1IP	P53801	180 aa		7.59	□□□□□ -1.19
CAPN1-223	ENST00000533079	SCGB1D4	Q6XE38	83 aa		7.59	□□□□□ -1.19
CAPN1-223	ENST00000533079	CEND1	Q8N111	149 aa		7.59	□□□□□ -1.19
CAPN1-223	ENST00000533079		A6NDN8	102 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	SMIM1	B2RUZ4	78 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	TIMM17B	O60830	172 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	BATF	Q16520	125 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	LCE2A	Q5TA79	106 aa	Predicted RBP	7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079		Q6ZVH6	145 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	DIRC1	Q969H9	104 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	NDUFA12	Q9UI09	145 aa		7.58	□□□□□ -1.2
CAPN1-223	ENST00000533079	IGLV1-50	A0A075B6I6	118 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079		A0A0J9YXY3	114 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079	LOC107984640	A0A0U1RRK4	108 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079	NDUFA1	O15239	70 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079	SFTA2	Q6UW10	78 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079	CD164L2	Q6UWJ8	174 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079	HIST1H4G	Q99525	98 aa		7.57	□□□□□ -1.2
CAPN1-223	ENST00000533079	ZNF561-AS1	K7EIQ3	104 aa		7.56	□□□□□ -1.2
CAPN1-223	ENST00000533079	HERV-K104	P63124	156 aa		7.56	□□□□□ -1.2
CAPN1-223	ENST00000533079	SYCN	Q0VAF6	134 aa		7.56	□□□□□ -1.2
CAPN1-223	ENST00000533079	PRR26	Q8N8Z3	221 aa		7.56	□□□□□ -1.2
CAPN1-223	ENST00000533079		A0A1B0GWB2	263 aa		7.55	□□□□□ -1.2
CAPN1-223	ENST00000533079	TMEM238	C9JI98	176 aa		7.55	□□□□□ -1.2
CAPN1-223	ENST00000533079	C1orf137	Q5JT78	98 aa		7.55	□□□□□ -1.2
CAPN1-223	ENST00000533079	PPDPF	Q9H3Y8	114 aa		7.55	□□□□□ -1.2
CAPN1-223	ENST00000533079	SMIM13	P0DJ93	91 aa		7.54	□□□□□ -1.2
CAPN1-223	ENST00000533079	XCL1	P47992	114 aa		7.54	□□□□□ -1.2
CAPN1-223	ENST00000533079	PRR4	Q16378	134 aa		7.54	□□□□□ -1.2
CAPN1-223	ENST00000533079	ZNF625	Q96I27	306 aa	Predicted RBP	7.54	□□□□□ -1.2
CAPN1-223	ENST00000533079	SPANXD	Q9BXN6	97 aa		7.54	□□□□□ -1.2
CAPN1-223	ENST00000533079	SPANXC	Q9NY87	97 aa		7.54	□□□□□ -1.2
CAPN1-223	ENST00000533079	TMEM238L	A0A1B0GVL6	79 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079		A6NJY4	79 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079		H0Y9J4	135 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079	TAX1BP3	O14907	124 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079	FXYD2	P54710	66 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079	GAGE2B	Q13066	116 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079	LITAF	Q99732	161 aa		7.53	□□□□□ -1.2
CAPN1-223	ENST00000533079		A0A1B0GV90	55 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079		A0A1W2PNN7	141 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	APOM	O95445	188 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	IGLV7-43	P04211	117 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	IFITM1	P13164	125 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	RPL13A	P40429	203 aa	Known RBP	7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	COX7B2	Q8TF08	81 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	LINC00526	Q96FQ7	95 aa		7.52	□□□□□ -1.21
CAPN1-223	ENST00000533079	COX7A2L	O14548	114 aa		7.51	□□□□□ -1.21
CAPN1-223	ENST00000533079	C9orf116	Q5BN46	136 aa	Predicted RBP	7.51	□□□□□ -1.21
CAPN1-223	ENST00000533079		Q8IZM0	81 aa		7.51	□□□□□ -1.21
CAPN1-223	ENST00000533079	COPS9	Q8WXC6	57 aa		7.51	□□□□□ -1.21
CAPN1-223	ENST00000533079	RPL24	P83731	157 aa	Known RBP	7.5	□□□□□ -1.21
CAPN1-223	ENST00000533079	C5orf38	Q86SI9	138 aa		7.5	□□□□□ -1.21
CAPN1-223	ENST00000533079	C9orf118	A6NHY6	69 aa		7.49	□□□□□ -1.21
CAPN1-223	ENST00000533079	CXCL5	P42830	114 aa		7.49	□□□□□ -1.21
CAPN1-223	ENST00000533079	KRTAP1-4	P0C5Y4	121 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	RPL18A	Q02543	176 aa	Known RBP	7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	KIAA0087	Q14695	138 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	C6orf226	Q5I0X4	101 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	ADAMTSL4-AS1	Q5T5F5	129 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	PHF5A	Q7RTV0	110 aa	Known RBP	7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	MUSTN1	Q8IVN3	82 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	C2orf48	Q96LS8	159 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	CAMK2N2	Q96S95	79 aa		7.48	□□□□□ -1.21
CAPN1-223	ENST00000533079	MAL	P21145	153 aa		7.47	□□□□□ -1.21
CAPN1-223	ENST00000533079	NHP2	Q9NX24	153 aa	Known RBP	7.47	□□□□□ -1.21
CAPN1-223	ENST00000533079	PRSS2	P07478	247 aa		7.46	□□□□□ -1.22
CAPN1-223	ENST00000533079		A0A0B4J2C4	111 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079		F8WDY8	70 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079	CFC1B	P0CG36	223 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079	CFC1	P0CG37	223 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079	COX17	Q14061	63 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079	RNF151	Q2KHN1	245 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079	TOMM7	Q9P0U1	55 aa		7.45	□□□□□ -1.22
CAPN1-223	ENST00000533079		A4D1N5	150 aa		7.44	□□□□□ -1.22
CAPN1-223	ENST00000533079	LINC00308	Q8TCZ7	52 aa		7.44	□□□□□ -1.22
CAPN1-223	ENST00000533079	LOC107984156	A0A0G2JMH3	177 aa		7.43	□□□□□ -1.22
CAPN1-223	ENST00000533079	CKS1B	P61024	79 aa		7.43	□□□□□ -1.22
CAPN1-223	ENST00000533079	MEIG1	Q5JSS6	88 aa		7.43	□□□□□ -1.22
CAPN1-223	ENST00000533079	ARL17A	Q8IVW1	177 aa		7.43	□□□□□ -1.22
CAPN1-223	ENST00000533079	PRO1854	Q9UHT4	67 aa		7.43	□□□□□ -1.22
CAPN1-223	ENST00000533079		A0A1W2PPM0	123 aa		7.41	□□□□□ -1.22
CAPN1-223	ENST00000533079		H3BUT2	72 aa		7.41	□□□□□ -1.22
CAPN1-223	ENST00000533079		K7ERJ3	54 aa		7.41	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms