RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 PLEKHB2Q96CS7 222 aa12.17□□□□□ -0.46
CPSF1-209ENST00000532725 LINC00158P58513 81 aa12.16□□□□□ -0.46
CPSF1-209ENST00000532725 HERV-K104P63124 156 aa12.16□□□□□ -0.46
CPSF1-209ENST00000532725 LINC01545Q5VT33 79 aa12.16□□□□□ -0.46
CPSF1-209ENST00000532725 MYMXA0A1B0GTQ4 84 aa12.15□□□□□ -0.46
CPSF1-209ENST00000532725 IGLV7-43P04211 117 aa12.15□□□□□ -0.46
CPSF1-209ENST00000532725 C3orf79P0CE67 100 aa12.15□□□□□ -0.46
CPSF1-209ENST00000532725 HERVK_113P61574 105 aa12.15□□□□□ -0.46
CPSF1-209ENST00000532725 LINC00167Q96N53 147 aa12.15□□□□□ -0.46
CPSF1-209ENST00000532725 A0A0U1RRA0 63 aa12.14□□□□□ -0.47
CPSF1-209ENST00000532725 J3QQQ9 107 aa12.14□□□□□ -0.47
CPSF1-209ENST00000532725 SMIM13P0DJ93 91 aa12.13□□□□□ -0.47
CPSF1-209ENST00000532725 VPREB1P12018 145 aa12.12□□□□□ -0.47
CPSF1-209ENST00000532725 LINC00587B1AMM8 73 aa12.11□□□□□ -0.47
CPSF1-209ENST00000532725 MEIG1Q5JSS6 88 aa12.11□□□□□ -0.47
CPSF1-209ENST00000532725 NKAPP1Q8N9T2 125 aa12.11□□□□□ -0.47
CPSF1-209ENST00000532725 Q8NDZ9 215 aa12.11□□□□□ -0.47
CPSF1-209ENST00000532725 RPL37AP8A6NKH3 93 aa12.1□□□□□ -0.47
CPSF1-209ENST00000532725 E9PLD3 99 aa12.1□□□□□ -0.47
CPSF1-209ENST00000532725 MT1HL1P0DM35 61 aa12.1□□□□□ -0.47
CPSF1-209ENST00000532725 RPL24P83731 157 aaKnown RBP12.1□□□□□ -0.47
CPSF1-209ENST00000532725 GAGE10A6NGK3 116 aa12.09□□□□□ -0.47
CPSF1-209ENST00000532725 LGALS3P17931 250 aaKnown RBP12.09□□□□□ -0.47
CPSF1-209ENST00000532725 NMUP48645 174 aa12.09□□□□□ -0.47
CPSF1-209ENST00000532725 KRTDAPP60985 99 aa12.09□□□□□ -0.47
CPSF1-209ENST00000532725 LINC01600Q96MT4 127 aa12.09□□□□□ -0.47
CPSF1-209ENST00000532725 MIR7-3HGQ8N6C7 128 aa12.08□□□□□ -0.48
CPSF1-209ENST00000532725 REG3GQ6UW15 175 aa12.07□□□□□ -0.48
CPSF1-209ENST00000532725 HIST3H2BBQ8N257 126 aa12.05□□□□□ -0.48
CPSF1-209ENST00000532725 DIRC1Q969H9 104 aa12.05□□□□□ -0.48
CPSF1-209ENST00000532725 IGLV1-50A0A075B6I6 118 aa12.04□□□□□ -0.48
CPSF1-209ENST00000532725 LOC107984156A0A0G2JMH3 177 aa12.03□□□□□ -0.48
CPSF1-209ENST00000532725 ZNF861PO60384 105 aa12.03□□□□□ -0.48
CPSF1-209ENST00000532725 BCE1O60756 84 aa12.03□□□□□ -0.48
CPSF1-209ENST00000532725 ARL17AQ8IVW1 177 aa12.03□□□□□ -0.48
CPSF1-209ENST00000532725 H0Y9J4 135 aa12.02□□□□□ -0.49
CPSF1-209ENST00000532725 BOD1L2Q8IYS8 172 aa12.02□□□□□ -0.49
CPSF1-209ENST00000532725 IGKV2-28A0A075B6P5 120 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 IGKV2D-26A0A0A0MRZ7 120 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 A0A0J9YXY3 114 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 IGKV2D-28P01615 120 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 KRTAP10-8P60410 259 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 DAND5Q8N907 189 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 HIST1H2BLQ99880 126 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 TNXBP22105 4242 aa12.01□□□□□ -0.49
CPSF1-209ENST00000532725 C20orf202A1L168 122 aa12□□□□□ -0.49
CPSF1-209ENST00000532725 M0R378 163 aa11.99□□□□□ -0.49
CPSF1-209ENST00000532725 S100A6P06703 90 aa11.99□□□□□ -0.49
CPSF1-209ENST00000532725 S100A2P29034 98 aa11.99□□□□□ -0.49
CPSF1-209ENST00000532725 ADAMTSL4-AS1Q5T5F5 129 aa11.99□□□□□ -0.49
CPSF1-209ENST00000532725 TMEM238C9JI98 176 aa11.96□□□□□ -0.49
CPSF1-209ENST00000532725 RPL28P46779 137 aaKnown RBP11.96□□□□□ -0.49
CPSF1-209ENST00000532725 SNRPEP62304 92 aaKnown RBP11.96□□□□□ -0.49
CPSF1-209ENST00000532725 KRTAP13-1Q8IUC0 172 aa11.96□□□□□ -0.49
CPSF1-209ENST00000532725 ATOH7Q8N100 152 aa11.96□□□□□ -0.49
CPSF1-209ENST00000532725 TTTY13Q9BZ97 58 aa11.96□□□□□ -0.49
CPSF1-209ENST00000532725 TMEM126AQ9H061 195 aa11.96□□□□□ -0.49
CPSF1-209ENST00000532725 KRTAP1-4P0C5Y4 121 aa11.95□□□□□ -0.5
CPSF1-209ENST00000532725 AKR1D1P51857 326 aa11.95□□□□□ -0.5
CPSF1-209ENST00000532725 ANKRD39Q53RE8 183 aa11.94□□□□□ -0.5
CPSF1-209ENST00000532725 LITAFQ99732 161 aa11.94□□□□□ -0.5
CPSF1-209ENST00000532725 C5orf52A6NGY3 159 aa11.93□□□□□ -0.5
CPSF1-209ENST00000532725 ZNF815PA8K554 130 aa11.93□□□□□ -0.5
CPSF1-209ENST00000532725 NCR3O14931 201 aa11.93□□□□□ -0.5
CPSF1-209ENST00000532725 EIF4EBP3O60516 100 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-209ENST00000532725 SOSTDC1Q6X4U4 206 aa11.93□□□□□ -0.5
CPSF1-209ENST00000532725 TIMM17BO60830 172 aa11.92□□□□□ -0.5
CPSF1-209ENST00000532725 UBE2AP49459 152 aa11.91□□□□□ -0.5
CPSF1-209ENST00000532725 NDUFC2O95298 119 aa11.9□□□□□ -0.5
CPSF1-209ENST00000532725 MIEN1Q9BRT3 115 aa11.9□□□□□ -0.5
CPSF1-209ENST00000532725 KCNQ1DNQ9H478 68 aa11.9□□□□□ -0.5
CPSF1-209ENST00000532725 TRBV10-2A0A0K0K1G8 114 aa11.89□□□□□ -0.51
CPSF1-209ENST00000532725 FAM19A1Q7Z5A9 133 aa11.89□□□□□ -0.51
CPSF1-209ENST00000532725 PRR26Q8N8Z3 221 aa11.89□□□□□ -0.51
CPSF1-209ENST00000532725 TRBV10-3A0A0K0K1G6 114 aa11.88□□□□□ -0.51
CPSF1-209ENST00000532725 NPC2P61916 151 aa11.88□□□□□ -0.51
CPSF1-209ENST00000532725 PRLHP81277 87 aa11.87□□□□□ -0.51
CPSF1-209ENST00000532725 LINC00308Q8TCZ7 52 aa11.87□□□□□ -0.51
CPSF1-209ENST00000532725 PRYO14603 147 aa11.86□□□□□ -0.51
CPSF1-209ENST00000532725 SPRR1AP35321 89 aa11.86□□□□□ -0.51
CPSF1-209ENST00000532725 PCP2Q8IVA1 136 aa11.86□□□□□ -0.51
CPSF1-209ENST00000532725 SPANXB1Q9NS25 103 aaPredicted RBP11.86□□□□□ -0.51
CPSF1-209ENST00000532725 KRTAP4-16G5E9R7 235 aaPredicted RBP11.84□□□□□ -0.51
CPSF1-209ENST00000532725 DDTP30046 118 aa11.84□□□□□ -0.51
CPSF1-209ENST00000532725 LINC00337Q8N6G1 96 aa11.83□□□□□ -0.52
CPSF1-209ENST00000532725 IGLV6-57P01721 117 aa11.82□□□□□ -0.52
CPSF1-209ENST00000532725 SCGB1D4Q6XE38 83 aa11.82□□□□□ -0.52
CPSF1-209ENST00000532725 SPANXDQ9BXN6 97 aa11.81□□□□□ -0.52
CPSF1-209ENST00000532725 SPANXCQ9NY87 97 aa11.81□□□□□ -0.52
CPSF1-209ENST00000532725 HMCN2Q8NDA2 5059 aa11.81□□□□□ -0.52
CPSF1-209ENST00000532725 SCGB1D1O95968 90 aa11.8□□□□□ -0.52
CPSF1-209ENST00000532725 HSBP1L1C9JCN9 74 aa11.79□□□□□ -0.52
CPSF1-209ENST00000532725 S100A12P80511 92 aa11.79□□□□□ -0.52
CPSF1-209ENST00000532725 S100A7L2Q5SY68 101 aa11.79□□□□□ -0.52
CPSF1-209ENST00000532725 ANAPC11Q9NYG5 84 aa11.79□□□□□ -0.52
CPSF1-209ENST00000532725 RPL13AP40429 203 aaKnown RBP11.78□□□□□ -0.52
CPSF1-209ENST00000532725 A0A087X002 238 aa11.77□□□□□ -0.53
CPSF1-209ENST00000532725 HIGD2AQ9BW72 106 aa11.77□□□□□ -0.53
CPSF1-209ENST00000532725 ETDCA0A1B0GVM5 59 aa11.76□□□□□ -0.53
CPSF1-209ENST00000532725 Q6ZVH6 145 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms