RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 PRR34Q9NV39 138 aa7.57□□□□□ -1.2
TRIM3-211ENST00000532542 MGAM2Q2M2H8 2515 aa7.57□□□□□ -1.2
TRIM3-211ENST00000532542 NUPR2A6NF83 97 aa7.56□□□□□ -1.2
TRIM3-211ENST00000532542 NHLRC4P0CG21 123 aaPredicted RBP7.56□□□□□ -1.2
TRIM3-211ENST00000532542 NDUFC2-KCTD14E9PQ53 114 aa7.56□□□□□ -1.2
TRIM3-211ENST00000532542 PRR3P79522 188 aaKnown RBP7.56□□□□□ -1.2
TRIM3-211ENST00000532542 PRO0461Q9UI25 63 aa7.56□□□□□ -1.2
TRIM3-211ENST00000532542 STAB1Q9NY15 2570 aa7.56□□□□□ -1.2
TRIM3-211ENST00000532542 UBE2BP63146 152 aa7.55□□□□□ -1.2
TRIM3-211ENST00000532542 NBEAL2Q6ZNJ1 2754 aa7.55□□□□□ -1.2
TRIM3-211ENST00000532542 SLPIP03973 132 aa7.55□□□□□ -1.2
TRIM3-211ENST00000532542 USP17L23D6RBM5 183 aa7.55□□□□□ -1.2
TRIM3-211ENST00000532542 RBM3P98179 157 aaKnown RBP7.54□□□□□ -1.2
TRIM3-211ENST00000532542 Q6ZRU5 148 aa7.54□□□□□ -1.2
TRIM3-211ENST00000532542 C14orf132Q9NPU4 83 aa7.54□□□□□ -1.2
TRIM3-211ENST00000532542 ZNF73O43830 326 aaPredicted RBP7.53□□□□□ -1.2
TRIM3-211ENST00000532542 TM2D3Q9BRN9 247 aa7.53□□□□□ -1.2
TRIM3-211ENST00000532542 LOC107984640A0A0U1RRK4 108 aa7.53□□□□□ -1.2
TRIM3-211ENST00000532542 C10orf25Q5T742 122 aa7.53□□□□□ -1.2
TRIM3-211ENST00000532542 EIF4EBP3O60516 100 aaPredicted RBP7.53□□□□□ -1.2
TRIM3-211ENST00000532542 PDZD2O15018 2839 aa7.53□□□□□ -1.2
TRIM3-211ENST00000532542 IGKV2-24A0A0C4DH68 120 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 DNAH10OSP0CZ25 163 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 SMCPP49901 116 aaPredicted RBP7.52□□□□□ -1.21
TRIM3-211ENST00000532542 HIST1H4AP62805 103 aaKnown RBP7.52□□□□□ -1.21
TRIM3-211ENST00000532542 PDE6GP18545 87 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 C6orf48Q9UBA6 75 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 NOTCH1P46531 2555 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 TRBV10-3A0A0K0K1G6 114 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 KIAA0087Q14695 138 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 DEFB105AQ8NG35 78 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 CELSR1Q9NYQ6 3014 aa7.52□□□□□ -1.21
TRIM3-211ENST00000532542 LINC00588Q9Y4M8 146 aa7.51□□□□□ -1.21
TRIM3-211ENST00000532542 A0A087WYN8 130 aa7.51□□□□□ -1.21
TRIM3-211ENST00000532542 GVQW2A0A096LPI5 108 aaPredicted RBP7.51□□□□□ -1.21
TRIM3-211ENST00000532542 IGKV2-28A0A075B6P5 120 aa7.51□□□□□ -1.21
TRIM3-211ENST00000532542 IGKV2D-28P01615 120 aa7.51□□□□□ -1.21
TRIM3-211ENST00000532542 Q8N814 137 aa7.51□□□□□ -1.21
TRIM3-211ENST00000532542 B9D2Q9BPU9 175 aa7.5□□□□□ -1.21
TRIM3-211ENST00000532542 Q6ZQY7 126 aa7.5□□□□□ -1.21
TRIM3-211ENST00000532542 LINC00643Q86TS7 51 aa7.5□□□□□ -1.21
TRIM3-211ENST00000532542 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.49□□□□□ -1.21
TRIM3-211ENST00000532542 FAM240AA0A1B0GVK7 77 aa7.49□□□□□ -1.21
TRIM3-211ENST00000532542 FAM19A5Q7Z5A7 132 aaPredicted RBP7.49□□□□□ -1.21
TRIM3-211ENST00000532542 HAMPP81172 84 aa7.48□□□□□ -1.21
TRIM3-211ENST00000532542 MT-ATP8P03928 68 aa7.48□□□□□ -1.21
TRIM3-211ENST00000532542 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.48□□□□□ -1.21
TRIM3-211ENST00000532542 DHRS4-AS1Q9P1J3 65 aa7.46□□□□□ -1.22
TRIM3-211ENST00000532542 FUSP35637 526 aaKnown RBP eCLIP7.45□□□□□ -1.22
TRIM3-211ENST00000532542 LINC00575Q6W349 94 aa7.45□□□□□ -1.22
TRIM3-211ENST00000532542 CSMD1Q96PZ7 3565 aa7.45□□□□□ -1.22
TRIM3-211ENST00000532542 FAM218AQ96MZ4 157 aa7.45□□□□□ -1.22
TRIM3-211ENST00000532542 XGP55808 180 aa7.44□□□□□ -1.22
TRIM3-211ENST00000532542 NIPBLQ6KC79 2804 aaeCLIP7.44□□□□□ -1.22
TRIM3-211ENST00000532542 SVEP1Q4LDE5 3571 aa7.43□□□□□ -1.22
TRIM3-211ENST00000532542 RPL37AP8A6NKH3 93 aa7.43□□□□□ -1.22
TRIM3-211ENST00000532542 M0R2N4 97 aa7.43□□□□□ -1.22
TRIM3-211ENST00000532542 UBE2AP49459 152 aa7.43□□□□□ -1.22
TRIM3-211ENST00000532542 MDFIQ99750 246 aa7.43□□□□□ -1.22
TRIM3-211ENST00000532542 IGKV3D-7A0A0C4DH55 119 aa7.42□□□□□ -1.22
TRIM3-211ENST00000532542 LINC00474Q9P2X8 69 aa7.42□□□□□ -1.22
TRIM3-211ENST00000532542 FAM19A1Q7Z5A9 133 aa7.42□□□□□ -1.22
TRIM3-211ENST00000532542 C15orf56Q8N910 161 aa7.41□□□□□ -1.22
TRIM3-211ENST00000532542 HIGD2AQ9BW72 106 aa7.41□□□□□ -1.22
TRIM3-211ENST00000532542 PRYO14603 147 aa7.4□□□□□ -1.23
TRIM3-211ENST00000532542 UPK3BQ9BT76 320 aa7.4□□□□□ -1.23
TRIM3-211ENST00000532542 TRBV7-6A0A0J9YX20 115 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 MRPL55Q7Z7F7 128 aaKnown RBP7.39□□□□□ -1.23
TRIM3-211ENST00000532542 FAM236AA0A1B0GUQ0 79 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 FAM236BA0A1B0GV22 79 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 IGLV6-57P01721 117 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 CCKP06307 115 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 NREPQ16612 68 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 ATP5EP2Q5VTU8 51 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 IMUPQ9GZP8 106 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 CDIP1Q9H305 208 aa7.39□□□□□ -1.23
TRIM3-211ENST00000532542 NDUFV3P56181 108 aaKnown RBP7.38□□□□□ -1.23
TRIM3-211ENST00000532542 VPREB1P12018 145 aa7.38□□□□□ -1.23
TRIM3-211ENST00000532542 Q6ZRP5 223 aa7.38□□□□□ -1.23
TRIM3-211ENST00000532542 C7orf33Q8WU49 177 aa7.38□□□□□ -1.23
TRIM3-211ENST00000532542 LY6G6CO95867 125 aa7.37□□□□□ -1.23
TRIM3-211ENST00000532542 C22orf24Q9Y442 160 aa7.37□□□□□ -1.23
TRIM3-211ENST00000532542 REG3GQ6UW15 175 aa7.36□□□□□ -1.23
TRIM3-211ENST00000532542 NBDYA0A0U1RRE5 68 aa7.36□□□□□ -1.23
TRIM3-211ENST00000532542 OTOGQ6ZRI0 2925 aa7.36□□□□□ -1.23
TRIM3-211ENST00000532542 ATOX1O00244 68 aa7.36□□□□□ -1.23
TRIM3-211ENST00000532542 ELOF1P60002 83 aaKnown RBP7.35□□□□□ -1.23
TRIM3-211ENST00000532542 Q6Q795 121 aa7.35□□□□□ -1.23
TRIM3-211ENST00000532542 SDIM1Q6ZPB5 146 aa7.35□□□□□ -1.23
TRIM3-211ENST00000532542 SVIPQ8NHG7 77 aa7.35□□□□□ -1.23
TRIM3-211ENST00000532542 CSMD2Q7Z408 3487 aa7.34□□□□□ -1.23
TRIM3-211ENST00000532542 LINC00167Q96N53 147 aa7.34□□□□□ -1.24
TRIM3-211ENST00000532542 C9orf153Q5TBE3 101 aa7.33□□□□□ -1.24
TRIM3-211ENST00000532542 Q6JHZ5 121 aa7.33□□□□□ -1.24
TRIM3-211ENST00000532542 TLX1NBP0CAT3 122 aa7.32□□□□□ -1.24
TRIM3-211ENST00000532542 LINC01600Q96MT4 127 aa7.32□□□□□ -1.24
TRIM3-211ENST00000532542 APLNQ9ULZ1 77 aa7.32□□□□□ -1.24
TRIM3-211ENST00000532542 C16orf90A8MZG2 172 aa7.31□□□□□ -1.24
TRIM3-211ENST00000532542 C1orf134Q5TEV5 83 aa7.31□□□□□ -1.24
TRIM3-211ENST00000532542 BPY2O14599 106 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms