RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 C6orf226Q5I0X4 101 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 XP32Q5T750 250 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 LCE2CQ5TA81 110 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 Q6ZRU5 148 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 PAPPA-AS1Q5QFB9 102 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 C2orf82Q6UX34 121 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 KRTAP17-1Q9BYP8 105 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 PRO0461Q9UI25 63 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 FAT1Q14517 4588 aa2.98□□□□□ -1.93
USP47-208ENST00000529813 PKD1P98161 4303 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 IGKV2D-26A0A0A0MRZ7 120 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 A4D1N5 150 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 PLA2G1BP04054 148 aaKnown RBP2.97□□□□□ -1.93
USP47-208ENST00000529813 UNQ6190/PRO20217Q6UXQ8 127 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 SDIM1Q6ZPB5 146 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 E9PLD3 99 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 CHCHD1Q96BP2 118 aaKnown RBP2.97□□□□□ -1.93
USP47-208ENST00000529813 TIMM21Q9BVV7 248 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 A0A096LNI7 61 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 LOC107984640A0A0U1RRK4 108 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 NDUFA1O15239 70 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 RPL37AP61513 92 aaKnown RBP2.97□□□□□ -1.93
USP47-208ENST00000529813 LINC00242Q5T6M2 205 aa2.97□□□□□ -1.93
USP47-208ENST00000529813 CSDC2Q9Y534 153 aaKnown RBP2.97□□□□□ -1.93
USP47-208ENST00000529813 GVQW2A0A096LPI5 108 aaPredicted RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 NDUFV3P56181 108 aaKnown RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 C9orf116Q5BN46 136 aaPredicted RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 C7orf33Q8WU49 177 aa2.96□□□□□ -1.94
USP47-208ENST00000529813 CDKN2A-AS1Q9UH64 79 aa2.96□□□□□ -1.94
USP47-208ENST00000529813 APOBP04114 4563 aaKnown RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 A0A096LNJ9 63 aa2.96□□□□□ -1.94
USP47-208ENST00000529813 CNBPP62633 177 aaKnown RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 MEIG1Q5JSS6 88 aa2.96□□□□□ -1.94
USP47-208ENST00000529813 TMEM170BQ5T4T1 132 aa2.96□□□□□ -1.94
USP47-208ENST00000529813 C10orf25Q5T742 122 aa2.96□□□□□ -1.94
USP47-208ENST00000529813 FAM19A5Q7Z5A7 132 aaPredicted RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 ZNF625Q96I27 306 aaPredicted RBP2.96□□□□□ -1.94
USP47-208ENST00000529813 IGHV3OR16-9A0A0B4J2B5 98 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 A0A0U1RRA0 63 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 MRPS36P82909 103 aaKnown RBP2.95□□□□□ -1.94
USP47-208ENST00000529813 TOMM6Q96B49 74 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 ABCA13Q86UQ4 5058 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 HBDP02042 147 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 UBE2D1P51668 147 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 UBE2BP63146 152 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 XAGE1AQ9HD64 81 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 PYGO1Q9Y3Y4 419 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 IGIPA6NJ69 53 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 HERVK_113P63121 156 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 SRSF9Q13242 221 aaKnown RBP eCLIP2.95□□□□□ -1.94
USP47-208ENST00000529813 CEND1Q8N111 149 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 HSPG2P98160 4391 aa2.95□□□□□ -1.94
USP47-208ENST00000529813 A0A087WZ39 114 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 ATP5LO75964 103 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 PFN2P35080 140 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 PMVKQ15126 192 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 C5orf47Q569G3 176 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 FAM104AQ969W3 186 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 TIMM17AQ99595 171 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 PCLOQ9Y6V0 5065 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 LOC107984156A0A0G2JMH3 177 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 PSMB2P49721 201 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 Q6ZSA8 131 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 ARL17AQ8IVW1 177 aa2.94□□□□□ -1.94
USP47-208ENST00000529813 IFITM1P13164 125 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 PHF5AQ7RTV0 110 aaKnown RBP2.93□□□□□ -1.94
USP47-208ENST00000529813 LINC00474Q9P2X8 69 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 C6orf48Q9UBA6 75 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 FAM168BA1KXE4 195 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 SPACA4Q8TDM5 124 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 C2orf48Q96LS8 159 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 AMELXQ99217 191 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 PKIGQ9Y2B9 76 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 A0A1W2PNN7 141 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 SNCGO76070 127 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 COX7B2Q8TF08 81 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 PPDPFLQ8WWR9 84 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 IFI27L1Q96BM0 104 aa2.93□□□□□ -1.94
USP47-208ENST00000529813 Q6ZRP5 223 aa2.92□□□□□ -1.94
USP47-208ENST00000529813 TEN1Q86WV5 123 aa2.92□□□□□ -1.94
USP47-208ENST00000529813 HIST1H4GQ99525 98 aa2.92□□□□□ -1.94
USP47-208ENST00000529813 C1orf137Q5JT78 98 aa2.92□□□□□ -1.94
USP47-208ENST00000529813 ANKRD29Q8N6D5 301 aa2.92□□□□□ -1.94
USP47-208ENST00000529813 MRPL35Q9NZE8 188 aaKnown RBP2.92□□□□□ -1.94
USP47-208ENST00000529813 LINC01549A6NIU2 74 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 C11orf86A6NJI1 115 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 LINC00158P58513 81 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 HIGD1BQ9P298 99 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 TINCRA0A1B0GVN0 87 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 SMIM1B2RUZ4 78 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 F8VRH5 84 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 KIAA0087Q14695 138 aa2.91□□□□□ -1.94
USP47-208ENST00000529813 NDUFC2-KCTD14E9PQ53 114 aa2.9□□□□□ -1.94
USP47-208ENST00000529813 TCL1BO95988 128 aa2.9□□□□□ -1.94
USP47-208ENST00000529813 Q8IZM0 81 aa2.9□□□□□ -1.94
USP47-208ENST00000529813 PLAC8Q9NZF1 115 aa2.9□□□□□ -1.94
USP47-208ENST00000529813 RPL37AP8A6NKH3 93 aa2.9□□□□□ -1.95
USP47-208ENST00000529813 ZNF22P17026 224 aaPredicted RBP2.9□□□□□ -1.95
USP47-208ENST00000529813 NKAPP1Q8N9T2 125 aa2.9□□□□□ -1.95
USP47-208ENST00000529813 TRBV30A0A0K0K1B3 111 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms