RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 TMEM170BQ5T4T1 132 aa7.62□□□□□ -1.19
CPSF1-204ENST00000529288 BAGE3Q86Y29 109 aa7.62□□□□□ -1.19
CPSF1-204ENST00000529288 FAM19A2Q8N3H0 131 aa7.62□□□□□ -1.19
CPSF1-204ENST00000529288 RETNLBQ9BQ08 111 aa7.62□□□□□ -1.19
CPSF1-204ENST00000529288 IGKV2D-26A0A0A0MRZ7 120 aa7.61□□□□□ -1.19
CPSF1-204ENST00000529288 KRTAP13-1Q8IUC0 172 aa7.61□□□□□ -1.19
CPSF1-204ENST00000529288 IFI27L1Q96BM0 104 aa7.61□□□□□ -1.19
CPSF1-204ENST00000529288 TRAV12-1A0A0B4J245 112 aa7.6□□□□□ -1.19
CPSF1-204ENST00000529288 A0A0U1RRA0 63 aa7.6□□□□□ -1.19
CPSF1-204ENST00000529288 HSBP1O75506 76 aa7.6□□□□□ -1.19
CPSF1-204ENST00000529288 VPREB1P12018 145 aa7.6□□□□□ -1.19
CPSF1-204ENST00000529288 LINC00304Q8N9R0 145 aa7.6□□□□□ -1.19
CPSF1-204ENST00000529288 TMEM126AQ9H061 195 aa7.6□□□□□ -1.19
CPSF1-204ENST00000529288 LINC00158P58513 81 aa7.59□□□□□ -1.19
CPSF1-204ENST00000529288 COX17Q14061 63 aa7.58□□□□□ -1.2
CPSF1-204ENST00000529288 FAM229BQ4G0N7 80 aa7.58□□□□□ -1.2
CPSF1-204ENST00000529288 CHTOPQ9Y3Y2 248 aaKnown RBP7.58□□□□□ -1.2
CPSF1-204ENST00000529288 M0R378 163 aa7.57□□□□□ -1.2
CPSF1-204ENST00000529288 Q8NDZ9 215 aa7.57□□□□□ -1.2
CPSF1-204ENST00000529288 HIGD2AQ9BW72 106 aa7.57□□□□□ -1.2
CPSF1-204ENST00000529288 A0A0U1RQV1 116 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BKO60814 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 ATP6V1G1O75348 118 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BJP06899 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BOP23527 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BBP33778 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BDP58876 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BCP62807 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST2H2BEQ16778 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BHQ93079 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BNQ99877 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 HIST1H2BMQ99879 126 aa7.56□□□□□ -1.2
CPSF1-204ENST00000529288 MUC2Q02817 5179 aa7.55□□□□□ -1.2
CPSF1-204ENST00000529288 TMEM223A0PJW6 202 aa7.55□□□□□ -1.2
CPSF1-204ENST00000529288 LEPROTL1O95214 131 aa7.54□□□□□ -1.2
CPSF1-204ENST00000529288 SFTA2Q6UW10 78 aa7.54□□□□□ -1.2
CPSF1-204ENST00000529288 C3orf22Q8N5N4 141 aa7.54□□□□□ -1.2
CPSF1-204ENST00000529288 PLEKHB2Q96CS7 222 aa7.54□□□□□ -1.2
CPSF1-204ENST00000529288 IGLV7-46A0A075B6I9 117 aa7.53□□□□□ -1.2
CPSF1-204ENST00000529288 MEIG1Q5JSS6 88 aa7.53□□□□□ -1.2
CPSF1-204ENST00000529288 CDIP1Q9H305 208 aa7.53□□□□□ -1.2
CPSF1-204ENST00000529288 SMIM13P0DJ93 91 aa7.52□□□□□ -1.21
CPSF1-204ENST00000529288 NCR3O14931 201 aa7.51□□□□□ -1.21
CPSF1-204ENST00000529288 FABP4P15090 132 aa7.51□□□□□ -1.21
CPSF1-204ENST00000529288 HSPB8Q9UJY1 196 aa7.51□□□□□ -1.21
CPSF1-204ENST00000529288 H0Y8G0 127 aa7.5□□□□□ -1.21
CPSF1-204ENST00000529288 BOD1L2Q8IYS8 172 aa7.5□□□□□ -1.21
CPSF1-204ENST00000529288 TSPEAR-AS2P59090 65 aa7.49□□□□□ -1.21
CPSF1-204ENST00000529288 C4orf48Q5BLP8 95 aa7.49□□□□□ -1.21
CPSF1-204ENST00000529288 COA6Q5JTJ3 125 aaKnown RBP7.49□□□□□ -1.21
CPSF1-204ENST00000529288 SPRR4Q96PI1 79 aa7.49□□□□□ -1.21
CPSF1-204ENST00000529288 PMCHL2Q9BQD1 86 aa7.49□□□□□ -1.21
CPSF1-204ENST00000529288 PPDPFQ9H3Y8 114 aa7.49□□□□□ -1.21
CPSF1-204ENST00000529288 MIR7-3HGQ8N6C7 128 aa7.48□□□□□ -1.21
CPSF1-204ENST00000529288 ZNF706Q9Y5V0 76 aaPredicted RBP7.48□□□□□ -1.21
CPSF1-204ENST00000529288 PLNP26678 52 aa7.47□□□□□ -1.21
CPSF1-204ENST00000529288 DAND5Q8N907 189 aa7.47□□□□□ -1.21
CPSF1-204ENST00000529288 SMCR5Q8TEV8 140 aa7.47□□□□□ -1.21
CPSF1-204ENST00000529288 ETDCA0A1B0GVM5 59 aa7.46□□□□□ -1.22
CPSF1-204ENST00000529288 PRYO14603 147 aa7.46□□□□□ -1.22
CPSF1-204ENST00000529288 DPM2O94777 84 aa7.46□□□□□ -1.22
CPSF1-204ENST00000529288 SPAG11AQ6PDA7 123 aa7.46□□□□□ -1.22
CPSF1-204ENST00000529288 NDUFA12Q9UI09 145 aa7.46□□□□□ -1.22
CPSF1-204ENST00000529288 SYS1-DBNDD2H3BUS1 97 aa7.45□□□□□ -1.22
CPSF1-204ENST00000529288 HERV-K104P63124 156 aa7.45□□□□□ -1.22
CPSF1-204ENST00000529288 TPRXLQ17RH7 258 aa7.45□□□□□ -1.22
CPSF1-204ENST00000529288 MAP1LC3CQ9BXW4 147 aa7.45□□□□□ -1.22
CPSF1-204ENST00000529288 MYMXA0A1B0GTQ4 84 aa7.44□□□□□ -1.22
CPSF1-204ENST00000529288 LEPROTO15243 131 aa7.44□□□□□ -1.22
CPSF1-204ENST00000529288 IGKCP01834 107 aa7.44□□□□□ -1.22
CPSF1-204ENST00000529288 S100A12P80511 92 aa7.44□□□□□ -1.22
CPSF1-204ENST00000529288 Q8NBF4 154 aa7.44□□□□□ -1.22
CPSF1-204ENST00000529288 MUC17Q685J3 4493 aa7.44□□□□□ -1.22
CPSF1-204ENST00000529288 TRBV10-3A0A0K0K1G6 114 aa7.43□□□□□ -1.22
CPSF1-204ENST00000529288 LINC00587B1AMM8 73 aa7.43□□□□□ -1.22
CPSF1-204ENST00000529288 LINC01545Q5VT33 79 aa7.43□□□□□ -1.22
CPSF1-204ENST00000529288 LINC00337Q8N6G1 96 aa7.43□□□□□ -1.22
CPSF1-204ENST00000529288 S100A1P23297 94 aa7.42□□□□□ -1.22
CPSF1-204ENST00000529288 CTAG1AP78358 180 aa7.42□□□□□ -1.22
CPSF1-204ENST00000529288 GAGE2AQ6NT46 116 aa7.42□□□□□ -1.22
CPSF1-204ENST00000529288 KCNQ1DNQ9H478 68 aa7.42□□□□□ -1.22
CPSF1-204ENST00000529288 J3QQQ9 107 aa7.41□□□□□ -1.22
CPSF1-204ENST00000529288 C3orf79P0CE67 100 aa7.41□□□□□ -1.22
CPSF1-204ENST00000529288 FAT4Q6V0I7 4981 aa7.41□□□□□ -1.22
CPSF1-204ENST00000529288 IGLV9-49A0A0B4J1Y8 123 aa7.4□□□□□ -1.22
CPSF1-204ENST00000529288 SPRR1AP35321 89 aa7.4□□□□□ -1.22
CPSF1-204ENST00000529288 KRTAP9-2Q9BYQ4 174 aa7.4□□□□□ -1.22
CPSF1-204ENST00000529288 E9PLD3 99 aa7.39□□□□□ -1.23
CPSF1-204ENST00000529288 DDTP30046 118 aa7.39□□□□□ -1.23
CPSF1-204ENST00000529288 PET117Q6UWS5 81 aa7.39□□□□□ -1.23
CPSF1-204ENST00000529288 B5MCH6 92 aa7.38□□□□□ -1.23
CPSF1-204ENST00000529288 KRTAP4-16G5E9R7 235 aaPredicted RBP7.38□□□□□ -1.23
CPSF1-204ENST00000529288 ERC2-IT1O76042 136 aa7.38□□□□□ -1.23
CPSF1-204ENST00000529288 HERVK_113P61574 105 aa7.38□□□□□ -1.23
CPSF1-204ENST00000529288 MOBPQ13875 183 aa7.38□□□□□ -1.23
CPSF1-204ENST00000529288 FP248Q71RG6 208 aaPredicted RBP7.38□□□□□ -1.23
CPSF1-204ENST00000529288 MIEN1Q9BRT3 115 aa7.38□□□□□ -1.23
CPSF1-204ENST00000529288 LOC107984156A0A0G2JMH3 177 aa7.37□□□□□ -1.23
CPSF1-204ENST00000529288 NMUP48645 174 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 166.4 ms