RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CDC42SE2Q9NRR3 84 aa3.98□□□□□ -1.77
CD44-225ENST00000527326 MYO9AB2RTY4 2548 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 PLXNB1O43157 2135 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 SPTAN1Q13813 2472 aaKnown RBP3.97□□□□□ -1.77
CD44-225ENST00000527326 A0A096LNT2 108 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 A0A0A0MQY5 61 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 IGHV3-53P01767 116 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 KIAA0087Q14695 138 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 LINC01554Q52M75 96 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 SCXQ7RTU7 201 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 ITPR3Q14573 2671 aa3.97□□□□□ -1.77
CD44-225ENST00000527326 KNL1Q8NG31 2342 aa3.96□□□□□ -1.77
CD44-225ENST00000527326 A0A087X002 238 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 A8MU10 97 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 M0R2N4 97 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 COX7BP24311 80 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 NANOS2P60321 138 aaKnown RBP3.96□□□□□ -1.78
CD44-225ENST00000527326 C9orf116Q5BN46 136 aaPredicted RBP3.96□□□□□ -1.78
CD44-225ENST00000527326 SPANXA2-OT1Q8N9U9 137 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 MINOS1-NBL1R4GNA1 71 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 DNHD1Q96M86 4753 aa3.96□□□□□ -1.78
CD44-225ENST00000527326 UBR5O95071 2799 aaPredicted RBP3.95□□□□□ -1.78
CD44-225ENST00000527326 SDK2Q58EX2 2172 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 TRGV2A0A075B6R0 118 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 ETDCA0A1B0GVM5 59 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 MP68P56378 58 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.95□□□□□ -1.78
CD44-225ENST00000527326 Q8N9W7 124 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 FDCSPQ8NFU4 85 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 B9D2Q9BPU9 175 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 DOPEY2Q9Y3R5 2298 aa3.95□□□□□ -1.78
CD44-225ENST00000527326 IGLV4-60A0A075B6I1 120 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 A0A1B0GW54 56 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 ATP6V0E1O15342 81 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 PRM2P04554 102 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 DEFB1P60022 68 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 LMO4P61968 165 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 MOBPQ13875 183 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 CASC2Q6XLA1 102 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 LINC00208Q96KT6 92 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 TOMM7Q9P0U1 55 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 AHCTF1Q8WYP5 2266 aa3.94□□□□□ -1.78
CD44-225ENST00000527326 CADP27708 2225 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 IGHV3-73A0A0B4J1V6 119 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 H3BUA1 57 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 LINC00313P59037 77 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 C6orf99Q4VX62 202 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 LINC01006Q8NI28 216 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 RHPN1-AS1Q9BWJ2 59 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 CELA1Q9UNI1 258 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 NOTCH2Q04721 2471 aa3.93□□□□□ -1.78
CD44-225ENST00000527326 UTP20O75691 2785 aaKnown RBP3.92□□□□□ -1.78
CD44-225ENST00000527326 IGHV4-30-2A0A087WSY4 118 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 C3orf84H3BNL1 204 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 H3BPC8 53 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 PROK1P58294 105 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 PRB3Q04118 309 aaPredicted RBP3.92□□□□□ -1.78
CD44-225ENST00000527326 COX17Q14061 63 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 Q6YL49 198 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 SMIM29Q86T20 159 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 LINC00476Q8WZB0 136 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 USMG5Q96IX5 58 aa3.92□□□□□ -1.78
CD44-225ENST00000527326 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.91□□□□□ -1.78
CD44-225ENST00000527326 CCL24O00175 119 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 ATMQ13315 3056 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 CNTRLQ7Z7A1 2325 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 Q8IZM0 81 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 MGAQ8IWI9 3026 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 ZFHX3Q15911 3703 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 CSMD1Q96PZ7 3565 aa3.91□□□□□ -1.78
CD44-225ENST00000527326 C2CD3Q4AC94 2353 aa3.9□□□□□ -1.78
CD44-225ENST00000527326 SPINK13Q1W4C9 94 aa3.9□□□□□ -1.79
CD44-225ENST00000527326 HIGD2BQ4VC39 106 aa3.9□□□□□ -1.79
CD44-225ENST00000527326 Q6ZQY7 126 aa3.9□□□□□ -1.79
CD44-225ENST00000527326 LINC01558Q9Y6Z2 57 aa3.9□□□□□ -1.79
CD44-225ENST00000527326 BSNQ9UPA5 3926 aa3.9□□□□□ -1.79
CD44-225ENST00000527326 CREBBPQ92793 2442 aa3.9□□□□□ -1.79
CD44-225ENST00000527326 FLNCQ14315 2725 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 IGHV3OR16-9A0A0B4J2B5 98 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 G3V318 75 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 C19orf84I3L1E1 186 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 BSPH1Q075Z2 132 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 LINC00612Q8N6U2 182 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 Q8N9L7 120 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 WFDC10AQ9H1F0 79 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 KCNQ1DNQ9H478 68 aa3.89□□□□□ -1.79
CD44-225ENST00000527326 IGKV3-7A0A075B6H7 116 aa3.88□□□□□ -1.79
CD44-225ENST00000527326 IGHV4-59P01825 116 aa3.88□□□□□ -1.79
CD44-225ENST00000527326 IGHV4-30-4P0DP06 118 aa3.88□□□□□ -1.79
CD44-225ENST00000527326 FBN2P35556 2912 aa3.88□□□□□ -1.79
CD44-225ENST00000527326 A8MTW9 85 aa3.87□□□□□ -1.79
CD44-225ENST00000527326 H0Y9J4 135 aa3.87□□□□□ -1.79
CD44-225ENST00000527326 IGLV6-57P01721 117 aa3.87□□□□□ -1.79
CD44-225ENST00000527326 PLAC8Q9NZF1 115 aa3.87□□□□□ -1.79
CD44-225ENST00000527326 FAM215AQ9Y5M1 114 aa3.87□□□□□ -1.79
CD44-225ENST00000527326 ABCA1O95477 2261 aa3.87□□□□□ -1.79
CD44-225ENST00000527326 SPENQ96T58 3664 aaKnown RBP3.86□□□□□ -1.79
CD44-225ENST00000527326 POLQO75417 2590 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 IGKV3-20P01619 116 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 IGHV3-11P01762 117 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms