RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 LINC00308Q8TCZ7 52 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 GAFA1Q96PS6 74 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 RETNQ9HD89 108 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 MINOS1-NBL1R4GNA1 71 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 KMT2AQ03164 3969 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 NACAE9PAV3 2078 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 IGKV3D-7A0A0C4DH55 119 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 F8WEM9 126 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 K7EIM0 57 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 TSHBP01222 138 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 PIK3CD-AS1Q5SR53 167 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 KTN1-AS1Q86SY8 53 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 GPHB5Q86YW7 130 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 C4orf3Q8WVX3 66 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 C17orf77Q96MU5 243 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 LINC00846Q9NV44 126 aa3.55□□□□□ -1.84
CD44-218ENST00000525469 ABCA13Q86UQ4 5058 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 IGLV5-45A0A087WSX0 123 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 ODF3BA8MYP8 253 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 E7EUB6 86 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 TFF1P04155 84 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 IGHV1-8P0DP01 117 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 CCL3L1P16619 93 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 KLK9Q2XQG4 91 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 FAM19A3Q7Z5A8 133 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 FAM223AQ8IWN6 122 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 Q8TAT8 98 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 KLK9Q9UKQ9 250 aa3.54□□□□□ -1.84
CD44-218ENST00000525469 IGLV11-55A0A075B6I3 123 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 IGLV4-3A0A075B6K6 122 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 TRAV23DV6A0A075B6W5 121 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 TRAV12-3A0A0B4J271 114 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 NDUFB1O75438 58 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 GAS8-AS1O95177 125 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 TRBV12-3P01733 135 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 IGHV3-48P01763 117 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 IGF1P05019 195 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 FUSP35637 526 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-218ENST00000525469 C10orf55Q5SWW7 151 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 LEAP2Q969E1 77 aa3.53□□□□□ -1.84
CD44-218ENST00000525469 RPL39LQ96EH5 51 aaKnown RBP3.53□□□□□ -1.84
CD44-218ENST00000525469 PLECQ15149 4684 aaKnown RBP3.53□□□□□ -1.84
CD44-218ENST00000525469 LOC110117498A0A087WWA1 95 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 UBE2AP49459 152 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 C15orf32Q32M92 178 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 NPBQ8NG41 125 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 CYSTM1Q9H1C7 97 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 C14orf132Q9NPU4 83 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 DPM3Q9P2X0 92 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 KIF25-AS1Q9Y6Z4 181 aa3.52□□□□□ -1.85
CD44-218ENST00000525469 A0A087WZ39 114 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 IGLV5-39A0A0G2JS06 123 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 A0A0J9YXV3 536 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 A0A1B0GW54 56 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 MRGPRG-AS1Q2M3A8 158 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 Q6ZVQ6 151 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 Q75L30 129 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 TMEM254Q8TBM7 123 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 LINC00167Q96N53 147 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 CYP4F30PQ9H0H9 118 aa3.51□□□□□ -1.85
CD44-218ENST00000525469 A0A087WVE0 104 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 TRBV7-4A0A0J9YYF1 115 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 A0A1B0GVY2 172 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 BUB1B-PAK6H3BSN5 160 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 IGLV1-47P01700 117 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 CTSGP08311 255 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 RPL39P62891 51 aaKnown RBP3.5□□□□□ -1.85
CD44-218ENST00000525469 DEFB114Q30KQ6 69 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 ADAMTSL4-AS1Q5T5F5 129 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 ENHOQ6UWT2 76 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 ATP11AUNQ6ZP68 121 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 PHF5AQ7RTV0 110 aaKnown RBP3.5□□□□□ -1.85
CD44-218ENST00000525469 C5orf56Q8N8D9 126 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 UBE2E2Q96LR5 201 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 LIMD2Q9BT23 127 aa3.5□□□□□ -1.85
CD44-218ENST00000525469 DMBT1Q9UGM3 2413 aaPredicted RBP3.5□□□□□ -1.85
CD44-218ENST00000525469 M0QY20 66 aa3.49□□□□□ -1.85
CD44-218ENST00000525469 LINC00315P59091 139 aa3.49□□□□□ -1.85
CD44-218ENST00000525469 SEC61BP60468 96 aaKnown RBP3.49□□□□□ -1.85
CD44-218ENST00000525469 ECSCRQ19T08 205 aa3.49□□□□□ -1.85
CD44-218ENST00000525469 OPRPNQ99935 248 aaPredicted RBP3.49□□□□□ -1.85
CD44-218ENST00000525469 Q9UF83 564 aa3.49□□□□□ -1.85
CD44-218ENST00000525469 IGHV3-64A0A075B6Q5 118 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 IGKV2D-30A0A075B6S6 120 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 A0A087X002 238 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 IGHV3-21A0A0B4J1V1 117 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 A0A0J9YWU9 116 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 CDK2AP2O75956 126 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 IGLV1-51P01701 117 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 RNASE3P12724 160 aaKnown RBP3.48□□□□□ -1.85
CD44-218ENST00000525469 NREPQ16612 68 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 ZFAND2AQ8N6M9 145 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 C22orf24Q9Y442 160 aa3.48□□□□□ -1.85
CD44-218ENST00000525469 KLLNB2CW77 178 aa3.47□□□□□ -1.85
CD44-218ENST00000525469 MIR7-3HGQ8N6C7 128 aa3.47□□□□□ -1.85
CD44-218ENST00000525469 Q8N6K4 173 aa3.47□□□□□ -1.85
CD44-218ENST00000525469 KRTAP1-5Q9BYS1 174 aa3.47□□□□□ -1.85
CD44-218ENST00000525469 SND1-IT1Q9HBX3 110 aa3.47□□□□□ -1.85
CD44-218ENST00000525469 DNAH10Q8IVF4 4471 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms