RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 TRAV8-3A0A0A6YYJ7 113 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 A0A0J9YXY3 114 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 E7EUB6 86 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 BUB1B-PAK6H3BSN5 160 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 LEPROTO15243 131 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 CGB3P0DN86 165 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 CGB7P0DN87 165 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 MIFP14174 115 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 CIRBPQ14011 172 aaKnown RBP3.82□□□□□ -1.8
NUP54-218ENST00000515460 ATP11AUNQ6ZP68 121 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 KRTAP7-1Q8IUC3 87 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 LYPD1Q8N2G4 141 aa3.82□□□□□ -1.8
NUP54-218ENST00000515460 IGKV3D-7A0A0C4DH55 119 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 LOC100131303A0A0U1RQF7 123 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 H7C2G1 150 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 PPP1R17O96001 155 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 FUSP35637 526 aaKnown RBP eCLIP3.81□□□□□ -1.8
NUP54-218ENST00000515460 ZNF80P51504 273 aaPredicted RBP3.81□□□□□ -1.8
NUP54-218ENST00000515460 FXYD7P58549 80 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 C17orf58Q2M2W7 97 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 C2orf83Q53S99 150 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 LYZL1Q6UWQ5 148 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 MUSTN1Q8IVN3 82 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 NKAPP1Q8N9T2 125 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 RNF185Q96GF1 192 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 TMEM14CQ9P0S9 112 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 PHLDA3Q9Y5J5 127 aa3.81□□□□□ -1.8
NUP54-218ENST00000515460 IGIPA6NJ69 53 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 A8MUN3 132 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 I3L3M4 83 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 CCL24O00175 119 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 BAALC-AS2P0C853 105 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 FAM53AQ6NSI3 398 aaPredicted RBP3.8□□□□□ -1.8
NUP54-218ENST00000515460 Q75L30 129 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 C5orf56Q8N8D9 126 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 LEAP2Q969E1 77 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 DIRC1Q969H9 104 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 TMEM141Q96I45 108 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 OBSCN-AS1Q96MR7 158 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 AMELXQ99217 191 aa3.8□□□□□ -1.8
NUP54-218ENST00000515460 FAT1Q14517 4588 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 A0A087WVE0 104 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 F6UB75 175 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 M0R381 172 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 DEFB136Q30KP8 78 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 PRNTQ86SH4 94 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 TMEM61Q8N0U2 210 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 KLHL30-AS1Q8NEE0 82 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 CLEC2BQ92478 149 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 SMIM2Q9BVW6 85 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 LINC00574Q9H8X3 128 aa3.79□□□□□ -1.8
NUP54-218ENST00000515460 SOCS3O14543 225 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 TSHBP01222 138 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 RNASE4P34096 147 aaKnown RBP3.78□□□□□ -1.8
NUP54-218ENST00000515460 RPL28P46779 137 aaKnown RBP3.78□□□□□ -1.8
NUP54-218ENST00000515460 PRCDQ00LT1 54 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 MIAQ16674 131 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 SPINK9Q5DT21 86 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 C9orf66Q5T8R8 295 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 SOSTDC1Q6X4U4 206 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 NOTCH2NLQ7Z3S9 236 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 Q8N6K4 173 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 Q8N9W7 124 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 CYP4F30PQ9H0H9 118 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 TMEM14BQ9NUH8 114 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 PKD1P98161 4303 aa3.78□□□□□ -1.8
NUP54-218ENST00000515460 TRAV23DV6A0A075B6W5 121 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 IGHV3-72A0A0B4J1Y9 119 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 IGHV1-3A0A0C4DH29 117 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 A6NN06 94 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 TRBV12-3P01733 135 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 S100A4P26447 101 aaKnown RBP3.77□□□□□ -1.81
NUP54-218ENST00000515460 PDE6HQ13956 83 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 KIAA0087Q14695 138 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 CLEC19AQ6UXS0 136 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 RMI2Q96E14 147 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 LINC00846Q9NV44 126 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 CRCT1Q9UGL9 99 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 SMAD5-AS1Q9Y6J3 95 aa3.77□□□□□ -1.81
NUP54-218ENST00000515460 DNAH17Q9UFH2 4485 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 IGLV4-69A0A075B6H9 119 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 IGKV1OR2-108A0A075B7D4 117 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 TRBV7-4A0A0J9YYF1 115 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 hDV103S1A0JD37 113 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 LY6G6CO95867 125 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 MP68P56378 58 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 ASB16-AS1Q495Z4 193 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 FAM229BQ4G0N7 80 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 SPANXN1Q5VSR9 72 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 C14orf178Q8N769 122 aaPredicted RBP3.76□□□□□ -1.81
NUP54-218ENST00000515460 UBL5Q9BZL1 73 aa3.76□□□□□ -1.81
NUP54-218ENST00000515460 IGHV4-4A0A075B6R2 117 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 A0A087X002 238 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 IGHV3-43A0A0B4J1X8 118 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 IGHV3-43DP0DP04 118 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 TSPEAR-AS2P59090 65 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 ADAMTSL4-AS1Q5T5F5 129 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 C2orf66Q6UXQ4 117 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 PATE2Q6UY27 113 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 ZNF833PQ6ZTB9 187 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms