RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 CXCL5P42830 114 aa9.61□□□□□ -0.87
SQSTM1-214ENST00000512234 LINC00474Q9P2X8 69 aa9.61□□□□□ -0.87
SQSTM1-214ENST00000512234 SERTAD4-AS1Q5TG53 156 aa9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 HSBP1L1C9JCN9 74 aa9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 DLEU1O43261 78 aa9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 PLNP26678 52 aa9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 RPL37AP61513 92 aaKnown RBP9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 LINC01545Q5VT33 79 aa9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 KRTAP11-1Q8IUC1 163 aa9.59□□□□□ -0.87
SQSTM1-214ENST00000512234 FLG2Q5D862 2391 aaPredicted RBP9.58□□□□□ -0.88
SQSTM1-214ENST00000512234 PKIGQ9Y2B9 76 aa9.58□□□□□ -0.88
SQSTM1-214ENST00000512234 MYCBP2O75592 4640 aa9.57□□□□□ -0.88
SQSTM1-214ENST00000512234 INAFM2P0DMQ5 153 aa9.56□□□□□ -0.88
SQSTM1-214ENST00000512234 ATOH7Q8N100 152 aa9.56□□□□□ -0.88
SQSTM1-214ENST00000512234 ERG28Q9UKR5 140 aa9.56□□□□□ -0.88
SQSTM1-214ENST00000512234 PLA2G1BP04054 148 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-214ENST00000512234 PCP4P48539 62 aa9.55□□□□□ -0.88
SQSTM1-214ENST00000512234 NDUFA12Q9UI09 145 aa9.55□□□□□ -0.88
SQSTM1-214ENST00000512234 LEPROTO15243 131 aa9.54□□□□□ -0.88
SQSTM1-214ENST00000512234 SLC25A34Q6PIV7 304 aa9.54□□□□□ -0.88
SQSTM1-214ENST00000512234 SMIM13P0DJ93 91 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 C7orf33Q8WU49 177 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 J3QQQ9 107 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 M0QXV9 152 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 LINC00158P58513 81 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 Q8NDZ9 215 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 TTTY13Q9BZ97 58 aa9.53□□□□□ -0.88
SQSTM1-214ENST00000512234 BATFQ16520 125 aa9.52□□□□□ -0.89
SQSTM1-214ENST00000512234 SND1-IT1Q9HBX3 110 aa9.52□□□□□ -0.89
SQSTM1-214ENST00000512234 IGKV2D-26A0A0A0MRZ7 120 aa9.51□□□□□ -0.89
SQSTM1-214ENST00000512234 DAND5Q8N907 189 aa9.51□□□□□ -0.89
SQSTM1-214ENST00000512234 C22orf24Q9Y442 160 aa9.51□□□□□ -0.89
SQSTM1-214ENST00000512234 HERVK_113P61574 105 aa9.51□□□□□ -0.89
SQSTM1-214ENST00000512234 MEIG1Q5JSS6 88 aa9.51□□□□□ -0.89
SQSTM1-214ENST00000512234 PLEKHB2Q96CS7 222 aa9.51□□□□□ -0.89
SQSTM1-214ENST00000512234 LRP1Q07954 4544 aaKnown RBP9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 GAGE10A6NGK3 116 aa9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 COX8AP10176 69 aa9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 LGALS3P17931 250 aaKnown RBP9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 PRR3P79522 188 aaKnown RBP9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 SVIPQ8NHG7 77 aa9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 PSORS1C2Q9UIG4 136 aa9.5□□□□□ -0.89
SQSTM1-214ENST00000512234 E9PLD3 99 aa9.49□□□□□ -0.89
SQSTM1-214ENST00000512234 PKHD1L1Q86WI1 4243 aa9.48□□□□□ -0.89
SQSTM1-214ENST00000512234 MYMXA0A1B0GTQ4 84 aa9.48□□□□□ -0.89
SQSTM1-214ENST00000512234 C21orf62-AS1Q17RA5 79 aa9.48□□□□□ -0.89
SQSTM1-214ENST00000512234 HINT1P49773 126 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-214ENST00000512234 MIR7-3HGQ8N6C7 128 aa9.48□□□□□ -0.89
SQSTM1-214ENST00000512234 RPL37AP8A6NKH3 93 aa9.47□□□□□ -0.89
SQSTM1-214ENST00000512234 UBE2BP63146 152 aa9.47□□□□□ -0.89
SQSTM1-214ENST00000512234 COX17Q14061 63 aa9.46□□□□□ -0.89
SQSTM1-214ENST00000512234 C1orf137Q5JT78 98 aa9.45□□□□□ -0.9
SQSTM1-214ENST00000512234 BVES-AS1Q5T3Y7 98 aa9.45□□□□□ -0.9
SQSTM1-214ENST00000512234 NPC2P61916 151 aa9.45□□□□□ -0.9
SQSTM1-214ENST00000512234 HERV-K104P63124 156 aa9.45□□□□□ -0.9
SQSTM1-214ENST00000512234 LINC00167Q96N53 147 aa9.45□□□□□ -0.9
SQSTM1-214ENST00000512234 A0A0J9YXY3 114 aa9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 EIF4EBP3O60516 100 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 VPREB1P12018 145 aa9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 UBE2V1Q13404 147 aa9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 ADAMTSL4-AS1Q5T5F5 129 aa9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 SFTA2Q6UW10 78 aa9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 MRPL55Q7Z7F7 128 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-214ENST00000512234 BOD1L2Q8IYS8 172 aa9.43□□□□□ -0.9
SQSTM1-214ENST00000512234 NMUP48645 174 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 NKAPP1Q8N9T2 125 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 FAT3Q8TDW7 4589 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 IGKV2-28A0A075B6P5 120 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 IGKV2D-28P01615 120 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 C2orf91Q6ZV80 131 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 PLA2G2DQ9UNK4 145 aa9.42□□□□□ -0.9
SQSTM1-214ENST00000512234 ZNF815PA8K554 130 aa9.41□□□□□ -0.9
SQSTM1-214ENST00000512234 PCP2Q8IVA1 136 aa9.41□□□□□ -0.9
SQSTM1-214ENST00000512234 IGLV5-37A0A075B6J1 123 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 TAX1BP3O14907 124 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 NCR3O14931 201 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 SOSTDC1Q6X4U4 206 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 TP73-AS1Q9UF72 201 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 TMEM238LA0A1B0GVL6 79 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 HSD52Q0P140 79 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 SRSF9Q13242 221 aaKnown RBP eCLIP9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 HIGD1BQ9P298 99 aa9.39□□□□□ -0.91
SQSTM1-214ENST00000512234 LITAFQ99732 161 aa9.38□□□□□ -0.91
SQSTM1-214ENST00000512234 A6NDN8 102 aa9.37□□□□□ -0.91
SQSTM1-214ENST00000512234 TMEM238C9JI98 176 aa9.37□□□□□ -0.91
SQSTM1-214ENST00000512234 IGLV7-43P04211 117 aa9.37□□□□□ -0.91
SQSTM1-214ENST00000512234 RPL24P83731 157 aaKnown RBP9.36□□□□□ -0.91
SQSTM1-214ENST00000512234 HERC1Q15751 4861 aa9.35□□□□□ -0.91
SQSTM1-214ENST00000512234 IGLV1-50A0A075B6I6 118 aa9.34□□□□□ -0.91
SQSTM1-214ENST00000512234 VAMP3Q15836 100 aa9.34□□□□□ -0.92
SQSTM1-214ENST00000512234 DMBT1Q9UGM3 2413 aaPredicted RBP9.33□□□□□ -0.92
SQSTM1-214ENST00000512234 SCGB1D4Q6XE38 83 aa9.33□□□□□ -0.92
SQSTM1-214ENST00000512234 SPINK6Q6UWN8 80 aa9.32□□□□□ -0.92
SQSTM1-214ENST00000512234 M0R378 163 aa9.31□□□□□ -0.92
SQSTM1-214ENST00000512234 TAL2Q16559 108 aa9.31□□□□□ -0.92
SQSTM1-214ENST00000512234 LINC00308Q8TCZ7 52 aa9.31□□□□□ -0.92
SQSTM1-214ENST00000512234 LOC107984156A0A0G2JMH3 177 aa9.3□□□□□ -0.92
SQSTM1-214ENST00000512234 TRBV10-3A0A0K0K1G6 114 aa9.3□□□□□ -0.92
SQSTM1-214ENST00000512234 C9orf118A6NHY6 69 aa9.3□□□□□ -0.92
SQSTM1-214ENST00000512234 J3QL48 77 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms